Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4602 and Echvi_4603 are separated by 98 nucleotides Echvi_4603 and Echvi_4604 are separated by 64 nucleotides
Echvi_4602: Echvi_4602 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,509,354 to 5,511,849
_4602
Echvi_4603: Echvi_4603 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 5,511,948 to 5,513,210
_4603
Echvi_4604: Echvi_4604 - Threonine aldolase, at 5,513,275 to 5,514,282
_4604
Position (kb) 5511
5512
5513
5514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5511.058 kb on + strand, within Echvi_4602 at 5511.058 kb on + strand, within Echvi_4602 at 5511.059 kb on - strand, within Echvi_4602 at 5511.059 kb on - strand, within Echvi_4602 at 5511.064 kb on + strand, within Echvi_4602 at 5511.190 kb on - strand, within Echvi_4602 at 5511.363 kb on - strand, within Echvi_4602 at 5511.404 kb on + strand, within Echvi_4602 at 5511.429 kb on + strand, within Echvi_4602 at 5511.430 kb on - strand, within Echvi_4602 at 5511.430 kb on - strand, within Echvi_4602 at 5511.430 kb on - strand, within Echvi_4602 at 5511.484 kb on + strand, within Echvi_4602 at 5511.512 kb on + strand, within Echvi_4602 at 5511.512 kb on + strand, within Echvi_4602 at 5511.635 kb on + strand at 5511.670 kb on + strand at 5511.671 kb on - strand at 5511.678 kb on + strand at 5511.679 kb on - strand at 5511.730 kb on + strand at 5511.730 kb on + strand at 5511.731 kb on - strand at 5511.731 kb on - strand at 5511.731 kb on - strand at 5512.028 kb on - strand at 5512.071 kb on + strand at 5512.099 kb on + strand, within Echvi_4603 at 5512.099 kb on + strand, within Echvi_4603 at 5512.100 kb on - strand, within Echvi_4603 at 5512.100 kb on - strand, within Echvi_4603 at 5512.106 kb on - strand, within Echvi_4603 at 5512.223 kb on - strand, within Echvi_4603 at 5512.255 kb on + strand, within Echvi_4603 at 5512.445 kb on - strand, within Echvi_4603 at 5512.504 kb on + strand, within Echvi_4603 at 5512.505 kb on - strand, within Echvi_4603 at 5512.528 kb on + strand, within Echvi_4603 at 5512.620 kb on + strand, within Echvi_4603 at 5512.681 kb on - strand, within Echvi_4603 at 5512.772 kb on + strand, within Echvi_4603 at 5512.840 kb on - strand, within Echvi_4603 at 5512.895 kb on + strand, within Echvi_4603 at 5512.896 kb on - strand, within Echvi_4603 at 5512.997 kb on + strand, within Echvi_4603 at 5513.003 kb on + strand, within Echvi_4603 at 5513.213 kb on - strand at 5513.213 kb on - strand at 5513.538 kb on + strand, within Echvi_4604 at 5513.538 kb on + strand, within Echvi_4604 at 5513.539 kb on - strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.555 kb on + strand, within Echvi_4604 at 5513.592 kb on + strand, within Echvi_4604 at 5513.657 kb on - strand at 5513.843 kb on + strand, within Echvi_4604 at 5513.908 kb on + strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.909 kb on - strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5513.950 kb on + strand, within Echvi_4604 at 5514.026 kb on + strand, within Echvi_4604 at 5514.030 kb on + strand, within Echvi_4604 at 5514.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,511,058 + Echvi_4602 0.68 -3.9 5,511,058 + Echvi_4602 0.68 -0.4 5,511,059 - Echvi_4602 0.68 +0.1 5,511,059 - Echvi_4602 0.68 -2.2 5,511,064 + Echvi_4602 0.69 -2.4 5,511,190 - Echvi_4602 0.74 -1.3 5,511,363 - Echvi_4602 0.80 -1.4 5,511,404 + Echvi_4602 0.82 -1.6 5,511,429 + Echvi_4602 0.83 -2.1 5,511,430 - Echvi_4602 0.83 -1.0 5,511,430 - Echvi_4602 0.83 +0.6 5,511,430 - Echvi_4602 0.83 -0.6 5,511,484 + Echvi_4602 0.85 -0.5 5,511,512 + Echvi_4602 0.86 +0.4 5,511,512 + Echvi_4602 0.86 +0.4 5,511,635 + -0.3 5,511,670 + -0.4 5,511,671 - +1.4 5,511,678 + -1.6 5,511,679 - +0.2 5,511,730 + -0.6 5,511,730 + +0.1 5,511,731 - -1.3 5,511,731 - +1.0 5,511,731 - +0.4 5,512,028 - +0.4 5,512,071 + -0.4 5,512,099 + Echvi_4603 0.12 -1.6 5,512,099 + Echvi_4603 0.12 -0.8 5,512,100 - Echvi_4603 0.12 +0.1 5,512,100 - Echvi_4603 0.12 -1.5 5,512,106 - Echvi_4603 0.13 -2.1 5,512,223 - Echvi_4603 0.22 -0.8 5,512,255 + Echvi_4603 0.24 -2.3 5,512,445 - Echvi_4603 0.39 +0.4 5,512,504 + Echvi_4603 0.44 +0.4 5,512,505 - Echvi_4603 0.44 +1.1 5,512,528 + Echvi_4603 0.46 -2.7 5,512,620 + Echvi_4603 0.53 -2.0 5,512,681 - Echvi_4603 0.58 -1.8 5,512,772 + Echvi_4603 0.65 -2.5 5,512,840 - Echvi_4603 0.71 -0.4 5,512,895 + Echvi_4603 0.75 +0.7 5,512,896 - Echvi_4603 0.75 -1.8 5,512,997 + Echvi_4603 0.83 +2.3 5,513,003 + Echvi_4603 0.84 +1.4 5,513,213 - -1.5 5,513,213 - +0.9 5,513,538 + Echvi_4604 0.26 -2.7 5,513,538 + Echvi_4604 0.26 -1.0 5,513,539 - Echvi_4604 0.26 +0.8 5,513,555 + Echvi_4604 0.28 -1.5 5,513,555 + Echvi_4604 0.28 +2.4 5,513,592 + Echvi_4604 0.31 +0.2 5,513,657 - +1.4 5,513,843 + Echvi_4604 0.56 +1.4 5,513,908 + Echvi_4604 0.63 -0.6 5,513,909 - Echvi_4604 0.63 -1.3 5,513,909 - Echvi_4604 0.63 -0.2 5,513,909 - Echvi_4604 0.63 +0.3 5,513,950 + Echvi_4604 0.67 +0.1 5,513,950 + Echvi_4604 0.67 -4.3 5,513,950 + Echvi_4604 0.67 -0.4 5,514,026 + Echvi_4604 0.75 +0.1 5,514,030 + Echvi_4604 0.75 +1.2 5,514,205 + +3.3
Or see this region's nucleotide sequence