Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4589 and Echvi_4590 are separated by 224 nucleotides Echvi_4590 and Echvi_4591 are separated by 38 nucleotides
Echvi_4589: Echvi_4589 - MoxR-like ATPases, at 5,496,243 to 5,497,169
_4589
Echvi_4590: Echvi_4590 - Arylsulfatase A and related enzymes, at 5,497,394 to 5,498,905
_4590
Echvi_4591: Echvi_4591 - Arylsulfatase A and related enzymes, at 5,498,944 to 5,500,443
_4591
Position (kb) 5497
5498
5499 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5496.435 kb on + strand, within Echvi_4589 at 5496.490 kb on + strand, within Echvi_4589 at 5496.519 kb on - strand, within Echvi_4589 at 5496.525 kb on + strand, within Echvi_4589 at 5496.526 kb on - strand, within Echvi_4589 at 5496.531 kb on - strand, within Echvi_4589 at 5496.532 kb on + strand, within Echvi_4589 at 5496.742 kb on + strand, within Echvi_4589 at 5496.917 kb on + strand, within Echvi_4589 at 5497.124 kb on + strand at 5497.143 kb on - strand at 5497.154 kb on + strand at 5497.178 kb on + strand at 5497.210 kb on + strand at 5497.210 kb on + strand at 5497.210 kb on + strand at 5497.211 kb on - strand at 5497.211 kb on - strand at 5497.232 kb on - strand at 5497.254 kb on - strand at 5497.290 kb on + strand at 5497.375 kb on - strand at 5497.528 kb on + strand at 5497.528 kb on + strand at 5497.529 kb on - strand at 5497.539 kb on + strand at 5497.539 kb on + strand at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.551 kb on + strand, within Echvi_4590 at 5497.552 kb on - strand, within Echvi_4590 at 5497.552 kb on - strand, within Echvi_4590 at 5497.552 kb on - strand, within Echvi_4590 at 5497.592 kb on + strand, within Echvi_4590 at 5497.592 kb on + strand, within Echvi_4590 at 5497.643 kb on - strand, within Echvi_4590 at 5497.660 kb on + strand, within Echvi_4590 at 5497.678 kb on + strand, within Echvi_4590 at 5497.679 kb on - strand, within Echvi_4590 at 5497.684 kb on - strand, within Echvi_4590 at 5497.697 kb on + strand, within Echvi_4590 at 5497.698 kb on - strand, within Echvi_4590 at 5497.702 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.774 kb on + strand, within Echvi_4590 at 5497.775 kb on - strand, within Echvi_4590 at 5497.775 kb on - strand, within Echvi_4590 at 5497.775 kb on - strand, within Echvi_4590 at 5497.775 kb on - strand, within Echvi_4590 at 5497.777 kb on + strand, within Echvi_4590 at 5497.777 kb on + strand, within Echvi_4590 at 5497.777 kb on + strand, within Echvi_4590 at 5497.777 kb on + strand, within Echvi_4590 at 5497.777 kb on + strand, within Echvi_4590 at 5497.778 kb on - strand, within Echvi_4590 at 5497.780 kb on - strand, within Echvi_4590 at 5497.780 kb on - strand, within Echvi_4590 at 5497.822 kb on - strand, within Echvi_4590 at 5497.847 kb on - strand, within Echvi_4590 at 5497.885 kb on + strand, within Echvi_4590 at 5497.909 kb on + strand, within Echvi_4590 at 5497.910 kb on - strand, within Echvi_4590 at 5497.913 kb on + strand, within Echvi_4590 at 5498.011 kb on + strand, within Echvi_4590 at 5498.011 kb on + strand, within Echvi_4590 at 5498.011 kb on + strand, within Echvi_4590 at 5498.053 kb on + strand, within Echvi_4590 at 5498.054 kb on - strand, within Echvi_4590 at 5498.058 kb on + strand, within Echvi_4590 at 5498.058 kb on + strand, within Echvi_4590 at 5498.097 kb on - strand, within Echvi_4590 at 5498.209 kb on + strand, within Echvi_4590 at 5498.209 kb on + strand, within Echvi_4590 at 5498.419 kb on - strand, within Echvi_4590 at 5498.419 kb on - strand, within Echvi_4590 at 5498.419 kb on - strand, within Echvi_4590 at 5498.421 kb on + strand, within Echvi_4590 at 5498.447 kb on - strand, within Echvi_4590 at 5498.618 kb on - strand, within Echvi_4590 at 5498.642 kb on - strand, within Echvi_4590 at 5498.658 kb on - strand, within Echvi_4590 at 5498.683 kb on + strand, within Echvi_4590 at 5498.757 kb on + strand at 5498.758 kb on - strand at 5498.885 kb on + strand at 5498.885 kb on + strand at 5498.889 kb on - strand at 5498.891 kb on + strand at 5499.006 kb on + strand at 5499.058 kb on + strand at 5499.071 kb on + strand at 5499.072 kb on - strand at 5499.072 kb on - strand at 5499.075 kb on - strand at 5499.301 kb on + strand, within Echvi_4591 at 5499.310 kb on - strand, within Echvi_4591 at 5499.310 kb on - strand, within Echvi_4591 at 5499.408 kb on + strand, within Echvi_4591 at 5499.409 kb on - strand, within Echvi_4591 at 5499.409 kb on - strand, within Echvi_4591 at 5499.412 kb on + strand, within Echvi_4591 at 5499.412 kb on + strand, within Echvi_4591 at 5499.413 kb on - strand, within Echvi_4591 at 5499.425 kb on - strand, within Echvi_4591 at 5499.585 kb on + strand, within Echvi_4591 at 5499.588 kb on + strand, within Echvi_4591 at 5499.589 kb on - strand, within Echvi_4591 at 5499.590 kb on + strand, within Echvi_4591 at 5499.590 kb on + strand, within Echvi_4591 at 5499.590 kb on + strand, within Echvi_4591 at 5499.591 kb on - strand, within Echvi_4591 at 5499.591 kb on - strand, within Echvi_4591 at 5499.591 kb on - strand, within Echvi_4591 at 5499.603 kb on + strand, within Echvi_4591 at 5499.604 kb on - strand, within Echvi_4591 at 5499.710 kb on + strand, within Echvi_4591 at 5499.710 kb on + strand, within Echvi_4591 at 5499.710 kb on + strand, within Echvi_4591 at 5499.711 kb on - strand, within Echvi_4591 at 5499.711 kb on - strand, within Echvi_4591 at 5499.721 kb on + strand, within Echvi_4591 at 5499.753 kb on + strand, within Echvi_4591 at 5499.810 kb on + strand, within Echvi_4591 at 5499.810 kb on + strand, within Echvi_4591 at 5499.897 kb on + strand, within Echvi_4591
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,496,435 + Echvi_4589 0.21 -2.1 5,496,490 + Echvi_4589 0.27 -0.0 5,496,519 - Echvi_4589 0.30 +0.7 5,496,525 + Echvi_4589 0.30 -1.1 5,496,526 - Echvi_4589 0.31 -0.9 5,496,531 - Echvi_4589 0.31 -1.7 5,496,532 + Echvi_4589 0.31 -1.8 5,496,742 + Echvi_4589 0.54 -1.9 5,496,917 + Echvi_4589 0.73 +0.1 5,497,124 + -2.0 5,497,143 - +0.8 5,497,154 + -0.6 5,497,178 + -1.6 5,497,210 + -2.0 5,497,210 + -0.8 5,497,210 + -2.0 5,497,211 - +1.0 5,497,211 - +1.8 5,497,232 - +1.0 5,497,254 - +1.9 5,497,290 + +0.9 5,497,375 - -1.9 5,497,528 + -1.6 5,497,528 + -0.1 5,497,529 - +0.9 5,497,539 + -2.7 5,497,539 + +1.1 5,497,551 + Echvi_4590 0.10 -0.9 5,497,551 + Echvi_4590 0.10 -1.3 5,497,551 + Echvi_4590 0.10 -2.1 5,497,551 + Echvi_4590 0.10 -0.6 5,497,551 + Echvi_4590 0.10 +1.9 5,497,551 + Echvi_4590 0.10 +1.4 5,497,551 + Echvi_4590 0.10 -0.2 5,497,551 + Echvi_4590 0.10 +1.0 5,497,551 + Echvi_4590 0.10 +1.3 5,497,551 + Echvi_4590 0.10 +3.4 5,497,551 + Echvi_4590 0.10 +0.0 5,497,552 - Echvi_4590 0.10 -1.3 5,497,552 - Echvi_4590 0.10 -0.8 5,497,552 - Echvi_4590 0.10 +0.5 5,497,592 + Echvi_4590 0.13 +0.4 5,497,592 + Echvi_4590 0.13 +0.9 5,497,643 - Echvi_4590 0.16 +2.9 5,497,660 + Echvi_4590 0.18 +0.3 5,497,678 + Echvi_4590 0.19 +1.9 5,497,679 - Echvi_4590 0.19 +1.4 5,497,684 - Echvi_4590 0.19 -2.2 5,497,697 + Echvi_4590 0.20 -0.6 5,497,698 - Echvi_4590 0.20 +1.0 5,497,702 + Echvi_4590 0.20 +2.1 5,497,774 + Echvi_4590 0.25 +1.6 5,497,774 + +1.4 5,497,774 + Echvi_4590 0.25 -1.7 5,497,774 + Echvi_4590 0.25 -0.6 5,497,774 + Echvi_4590 0.25 +0.9 5,497,774 + Echvi_4590 0.25 +0.2 5,497,774 + Echvi_4590 0.25 +2.5 5,497,774 + Echvi_4590 0.25 +0.3 5,497,774 + Echvi_4590 0.25 -2.4 5,497,774 + Echvi_4590 0.25 -2.2 5,497,775 - Echvi_4590 0.25 -1.3 5,497,775 - Echvi_4590 0.25 -1.6 5,497,775 - Echvi_4590 0.25 -0.9 5,497,775 - Echvi_4590 0.25 +0.4 5,497,777 + Echvi_4590 0.25 -1.1 5,497,777 + Echvi_4590 0.25 +2.7 5,497,777 + Echvi_4590 0.25 +2.4 5,497,777 + Echvi_4590 0.25 +2.1 5,497,777 + Echvi_4590 0.25 -3.8 5,497,778 - Echvi_4590 0.25 +0.2 5,497,780 - Echvi_4590 0.26 +1.4 5,497,780 - Echvi_4590 0.26 +1.9 5,497,822 - Echvi_4590 0.28 -1.0 5,497,847 - Echvi_4590 0.30 +0.1 5,497,885 + Echvi_4590 0.32 +1.0 5,497,909 + Echvi_4590 0.34 -2.1 5,497,910 - Echvi_4590 0.34 +1.3 5,497,913 + Echvi_4590 0.34 +1.5 5,498,011 + Echvi_4590 0.41 +0.1 5,498,011 + Echvi_4590 0.41 +1.5 5,498,011 + Echvi_4590 0.41 +0.3 5,498,053 + Echvi_4590 0.44 -1.3 5,498,054 - Echvi_4590 0.44 -1.4 5,498,058 + Echvi_4590 0.44 -1.3 5,498,058 + Echvi_4590 0.44 +0.2 5,498,097 - Echvi_4590 0.46 -1.6 5,498,209 + Echvi_4590 0.54 -1.7 5,498,209 + Echvi_4590 0.54 +0.4 5,498,419 - Echvi_4590 0.68 -2.1 5,498,419 - Echvi_4590 0.68 +2.9 5,498,419 - Echvi_4590 0.68 -1.4 5,498,421 + Echvi_4590 0.68 -1.5 5,498,447 - Echvi_4590 0.70 +1.3 5,498,618 - Echvi_4590 0.81 +1.0 5,498,642 - Echvi_4590 0.83 +0.8 5,498,658 - Echvi_4590 0.84 -0.2 5,498,683 + Echvi_4590 0.85 -2.0 5,498,757 + -0.4 5,498,758 - -1.8 5,498,885 + +0.4 5,498,885 + +2.4 5,498,889 - +1.4 5,498,891 + -0.0 5,499,006 + +0.6 5,499,058 + -2.0 5,499,071 + +2.0 5,499,072 - -0.2 5,499,072 - -0.8 5,499,075 - -3.7 5,499,301 + Echvi_4591 0.24 +0.1 5,499,310 - Echvi_4591 0.24 +2.9 5,499,310 - Echvi_4591 0.24 +0.8 5,499,408 + Echvi_4591 0.31 -0.9 5,499,409 - Echvi_4591 0.31 -0.5 5,499,409 - Echvi_4591 0.31 -1.1 5,499,412 + Echvi_4591 0.31 +1.4 5,499,412 + Echvi_4591 0.31 +0.5 5,499,413 - Echvi_4591 0.31 -1.9 5,499,425 - Echvi_4591 0.32 +1.3 5,499,585 + Echvi_4591 0.43 +1.0 5,499,588 + Echvi_4591 0.43 -2.6 5,499,589 - Echvi_4591 0.43 -0.4 5,499,590 + Echvi_4591 0.43 -1.1 5,499,590 + Echvi_4591 0.43 +2.5 5,499,590 + Echvi_4591 0.43 +1.4 5,499,591 - Echvi_4591 0.43 -0.8 5,499,591 - Echvi_4591 0.43 +0.1 5,499,591 - Echvi_4591 0.43 -2.5 5,499,603 + Echvi_4591 0.44 +2.6 5,499,604 - Echvi_4591 0.44 +0.6 5,499,710 + Echvi_4591 0.51 -1.8 5,499,710 + Echvi_4591 0.51 +1.2 5,499,710 + Echvi_4591 0.51 -2.6 5,499,711 - Echvi_4591 0.51 -1.1 5,499,711 - Echvi_4591 0.51 -1.6 5,499,721 + Echvi_4591 0.52 -0.4 5,499,753 + Echvi_4591 0.54 -0.7 5,499,810 + Echvi_4591 0.58 -0.2 5,499,810 + Echvi_4591 0.58 +0.8 5,499,897 + Echvi_4591 0.64 +0.9
Or see this region's nucleotide sequence