Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4584

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4583 and Echvi_4584 overlap by 11 nucleotidesEchvi_4584 and Echvi_4585 are separated by 13 nucleotides Echvi_4583: Echvi_4583 - Aspartate/tyrosine/aromatic aminotransferase, at 5,489,349 to 5,490,677 _4583 Echvi_4584: Echvi_4584 - hypothetical protein, at 5,490,667 to 5,492,070 _4584 Echvi_4585: Echvi_4585 - Mg-chelatase subunit ChlD, at 5,492,084 to 5,493,808 _4585 Position (kb) 5490 5491 5492 5493Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5489.705 kb on - strand, within Echvi_4583at 5489.705 kb on - strand, within Echvi_4583at 5489.722 kb on + strand, within Echvi_4583at 5490.141 kb on + strand, within Echvi_4583at 5490.142 kb on - strand, within Echvi_4583at 5490.194 kb on - strand, within Echvi_4583at 5490.217 kb on + strand, within Echvi_4583at 5490.218 kb on - strand, within Echvi_4583at 5490.225 kb on + strand, within Echvi_4583at 5490.226 kb on - strand, within Echvi_4583at 5490.228 kb on - strand, within Echvi_4583at 5490.375 kb on + strand, within Echvi_4583at 5490.376 kb on - strand, within Echvi_4583at 5490.439 kb on + strand, within Echvi_4583at 5490.439 kb on + strand, within Echvi_4583at 5490.439 kb on + strand, within Echvi_4583at 5490.516 kb on + strand, within Echvi_4583at 5490.517 kb on - strand, within Echvi_4583at 5490.517 kb on - strand, within Echvi_4583at 5490.517 kb on - strand, within Echvi_4583at 5490.517 kb on - strand, within Echvi_4583at 5490.517 kb on - strand, within Echvi_4583at 5490.597 kb on + strandat 5490.598 kb on - strandat 5490.645 kb on + strandat 5490.645 kb on + strandat 5490.646 kb on - strandat 5490.668 kb on + strandat 5490.729 kb on - strandat 5490.980 kb on - strand, within Echvi_4584at 5490.983 kb on + strand, within Echvi_4584at 5490.983 kb on + strand, within Echvi_4584at 5491.005 kb on - strand, within Echvi_4584at 5491.028 kb on + strand, within Echvi_4584at 5491.029 kb on - strand, within Echvi_4584at 5491.208 kb on - strand, within Echvi_4584at 5491.240 kb on - strand, within Echvi_4584at 5491.724 kb on + strand, within Echvi_4584at 5491.797 kb on + strand, within Echvi_4584at 5491.798 kb on - strand, within Echvi_4584at 5491.799 kb on + strand, within Echvi_4584at 5491.799 kb on + strand, within Echvi_4584at 5491.818 kb on + strand, within Echvi_4584at 5491.819 kb on - strand, within Echvi_4584at 5491.862 kb on - strand, within Echvi_4584at 5491.895 kb on + strand, within Echvi_4584at 5491.895 kb on + strand, within Echvi_4584at 5491.911 kb on + strand, within Echvi_4584at 5492.071 kb on - strandat 5492.071 kb on - strandat 5492.076 kb on + strandat 5492.076 kb on + strandat 5492.076 kb on + strandat 5492.077 kb on - strandat 5492.077 kb on - strandat 5492.077 kb on - strandat 5492.077 kb on - strandat 5492.564 kb on - strand, within Echvi_4585at 5492.564 kb on - strand, within Echvi_4585at 5492.566 kb on - strand, within Echvi_4585at 5492.616 kb on + strand, within Echvi_4585at 5492.617 kb on - strand, within Echvi_4585at 5492.731 kb on - strand, within Echvi_4585at 5492.753 kb on + strand, within Echvi_4585at 5492.853 kb on - strand, within Echvi_4585at 5492.969 kb on - strand, within Echvi_4585at 5493.053 kb on + strand, within Echvi_4585

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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5,489,705 - Echvi_4583 0.27 +0.8
5,489,705 - Echvi_4583 0.27 -1.1
5,489,722 + Echvi_4583 0.28 -2.9
5,490,141 + Echvi_4583 0.60 -1.9
5,490,142 - Echvi_4583 0.60 +1.0
5,490,194 - Echvi_4583 0.64 -3.2
5,490,217 + Echvi_4583 0.65 +0.1
5,490,218 - Echvi_4583 0.65 -1.4
5,490,225 + Echvi_4583 0.66 -0.6
5,490,226 - Echvi_4583 0.66 +1.4
5,490,228 - Echvi_4583 0.66 +0.1
5,490,375 + Echvi_4583 0.77 -0.9
5,490,376 - Echvi_4583 0.77 +0.8
5,490,439 + Echvi_4583 0.82 +1.5
5,490,439 + Echvi_4583 0.82 -0.2
5,490,439 + Echvi_4583 0.82 +0.7
5,490,516 + Echvi_4583 0.88 -1.2
5,490,517 - Echvi_4583 0.88 +1.1
5,490,517 - Echvi_4583 0.88 -1.4
5,490,517 - Echvi_4583 0.88 +0.2
5,490,517 - Echvi_4583 0.88 +0.4
5,490,517 - Echvi_4583 0.88 -0.9
5,490,597 + -1.8
5,490,598 - -0.2
5,490,645 + +0.1
5,490,645 + -1.7
5,490,646 - -0.1
5,490,668 + +0.6
5,490,729 - -0.2
5,490,980 - Echvi_4584 0.22 -0.2
5,490,983 + Echvi_4584 0.23 +0.4
5,490,983 + Echvi_4584 0.23 -1.6
5,491,005 - Echvi_4584 0.24 -0.9
5,491,028 + Echvi_4584 0.26 -0.3
5,491,029 - Echvi_4584 0.26 +0.4
5,491,208 - Echvi_4584 0.39 +1.4
5,491,240 - Echvi_4584 0.41 +1.1
5,491,724 + Echvi_4584 0.75 -0.2
5,491,797 + Echvi_4584 0.80 +0.0
5,491,798 - Echvi_4584 0.81 -1.4
5,491,799 + Echvi_4584 0.81 -1.2
5,491,799 + Echvi_4584 0.81 -1.8
5,491,818 + Echvi_4584 0.82 -1.4
5,491,819 - Echvi_4584 0.82 -2.9
5,491,862 - Echvi_4584 0.85 +0.1
5,491,895 + Echvi_4584 0.87 +0.1
5,491,895 + Echvi_4584 0.87 +0.8
5,491,911 + Echvi_4584 0.89 +1.2
5,492,071 - +0.4
5,492,071 - +0.9
5,492,076 + +1.3
5,492,076 + +0.9
5,492,076 + -1.1
5,492,077 - -3.1
5,492,077 - +1.8
5,492,077 - -1.0
5,492,077 - -0.9
5,492,564 - Echvi_4585 0.28 +0.8
5,492,564 - Echvi_4585 0.28 -0.2
5,492,566 - Echvi_4585 0.28 -2.1
5,492,616 + Echvi_4585 0.31 -1.2
5,492,617 - Echvi_4585 0.31 +3.1
5,492,731 - Echvi_4585 0.38 -1.6
5,492,753 + Echvi_4585 0.39 +1.1
5,492,853 - Echvi_4585 0.45 +0.8
5,492,969 - Echvi_4585 0.51 -1.1
5,493,053 + Echvi_4585 0.56 -0.8

Or see this region's nucleotide sequence