Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4427

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4426 and Echvi_4427 are separated by 3 nucleotidesEchvi_4427 and Echvi_4428 are separated by 517 nucleotides Echvi_4426: Echvi_4426 - Outer membrane protein, at 5,293,756 to 5,295,111 _4426 Echvi_4427: Echvi_4427 - Transcriptional regulator, at 5,295,115 to 5,295,720 _4427 Echvi_4428: Echvi_4428 - Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain, at 5,296,238 to 5,299,924 _4428 Position (kb) 5295 5296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.124 kb on + strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.125 kb on - strand, within Echvi_4426at 5294.145 kb on + strand, within Echvi_4426at 5294.205 kb on - strand, within Echvi_4426at 5294.234 kb on + strand, within Echvi_4426at 5294.267 kb on - strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.329 kb on + strand, within Echvi_4426at 5294.484 kb on - strand, within Echvi_4426at 5294.697 kb on - strand, within Echvi_4426at 5294.778 kb on - strand, within Echvi_4426at 5295.016 kb on + strandat 5295.135 kb on + strandat 5295.137 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.168 kb on + strandat 5295.202 kb on + strand, within Echvi_4427at 5295.211 kb on + strand, within Echvi_4427at 5295.315 kb on + strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.447 kb on - strand, within Echvi_4427at 5295.468 kb on - strand, within Echvi_4427at 5295.558 kb on + strand, within Echvi_4427at 5295.602 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.700 kb on + strandat 5295.701 kb on - strandat 5295.962 kb on + strandat 5295.994 kb on + strandat 5296.088 kb on + strandat 5296.093 kb on - strandat 5296.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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5,294,124 + Echvi_4426 0.27 -1.3
5,294,124 + Echvi_4426 0.27 +0.9
5,294,124 + Echvi_4426 0.27 -1.1
5,294,124 + Echvi_4426 0.27 +1.7
5,294,125 - Echvi_4426 0.27 -1.0
5,294,125 - Echvi_4426 0.27 -0.4
5,294,125 - Echvi_4426 0.27 +0.9
5,294,145 + Echvi_4426 0.29 +0.5
5,294,205 - Echvi_4426 0.33 -1.6
5,294,234 + Echvi_4426 0.35 +0.9
5,294,267 - Echvi_4426 0.38 +1.7
5,294,329 + Echvi_4426 0.42 +1.0
5,294,329 + Echvi_4426 0.42 +2.4
5,294,484 - Echvi_4426 0.54 +0.8
5,294,697 - Echvi_4426 0.69 +0.0
5,294,778 - Echvi_4426 0.75 -1.3
5,295,016 + -1.0
5,295,135 + -0.6
5,295,137 + +2.1
5,295,168 + -0.6
5,295,168 + +2.4
5,295,168 + -1.0
5,295,168 + -0.9
5,295,202 + Echvi_4427 0.14 +0.0
5,295,211 + Echvi_4427 0.16 +2.0
5,295,315 + Echvi_4427 0.33 +1.1
5,295,316 - Echvi_4427 0.33 -0.5
5,295,316 - Echvi_4427 0.33 +0.9
5,295,316 - Echvi_4427 0.33 +1.6
5,295,447 - Echvi_4427 0.55 +0.2
5,295,468 - Echvi_4427 0.58 -0.5
5,295,558 + Echvi_4427 0.73 +0.4
5,295,602 + Echvi_4427 0.80 +2.0
5,295,656 + Echvi_4427 0.89 -1.1
5,295,656 + Echvi_4427 0.89 -2.8
5,295,656 + Echvi_4427 0.89 +1.0
5,295,656 + Echvi_4427 0.89 +3.4
5,295,656 + Echvi_4427 0.89 +0.5
5,295,656 + Echvi_4427 0.89 -0.1
5,295,656 + Echvi_4427 0.89 -1.1
5,295,656 + Echvi_4427 0.89 +0.6
5,295,656 + Echvi_4427 0.89 +1.4
5,295,656 + Echvi_4427 0.89 -0.8
5,295,656 + Echvi_4427 0.89 -2.6
5,295,657 - Echvi_4427 0.89 +0.2
5,295,657 - Echvi_4427 0.89 -0.7
5,295,657 - Echvi_4427 0.89 -0.6
5,295,657 - Echvi_4427 0.89 +0.0
5,295,657 - Echvi_4427 0.89 -1.0
5,295,657 - Echvi_4427 0.89 -0.3
5,295,657 - Echvi_4427 0.89 -0.6
5,295,657 - Echvi_4427 0.89 +0.7
5,295,657 - Echvi_4427 0.89 +0.4
5,295,700 + +0.4
5,295,701 - -1.0
5,295,962 + -0.1
5,295,994 + +2.3
5,296,088 + +1.5
5,296,093 - +2.5
5,296,156 + -2.3

Or see this region's nucleotide sequence