Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4407 and Echvi_4408 are separated by 52 nucleotides Echvi_4408 and Echvi_4409 are separated by 26 nucleotides
Echvi_4407: Echvi_4407 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 5,270,476 to 5,271,237
_4407
Echvi_4408: Echvi_4408 - Mannose-1-phosphate guanylyltransferase, at 5,271,290 to 5,272,288
_4408
Echvi_4409: Echvi_4409 - Nucleoside-diphosphate-sugar epimerases, at 5,272,315 to 5,273,403
_4409
Position (kb) 5271
5272
5273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5270.336 kb on - strand at 5270.338 kb on + strand at 5270.341 kb on + strand at 5270.342 kb on - strand at 5270.342 kb on - strand at 5270.403 kb on + strand at 5270.403 kb on + strand at 5270.410 kb on + strand at 5270.477 kb on + strand at 5270.512 kb on + strand at 5270.529 kb on - strand at 5270.667 kb on + strand, within Echvi_4407 at 5270.688 kb on + strand, within Echvi_4407 at 5270.774 kb on - strand, within Echvi_4407 at 5270.774 kb on - strand, within Echvi_4407 at 5270.788 kb on + strand, within Echvi_4407 at 5270.788 kb on + strand, within Echvi_4407 at 5270.821 kb on + strand, within Echvi_4407 at 5270.822 kb on - strand, within Echvi_4407 at 5270.858 kb on + strand, within Echvi_4407 at 5270.858 kb on + strand, within Echvi_4407 at 5270.859 kb on - strand, within Echvi_4407 at 5270.883 kb on - strand, within Echvi_4407 at 5271.073 kb on + strand, within Echvi_4407 at 5271.149 kb on - strand, within Echvi_4407 at 5271.164 kb on + strand at 5271.195 kb on + strand at 5271.195 kb on + strand at 5271.195 kb on + strand at 5271.196 kb on - strand at 5271.196 kb on - strand at 5271.219 kb on + strand at 5271.219 kb on + strand at 5271.219 kb on + strand at 5271.220 kb on - strand at 5271.220 kb on - strand at 5271.220 kb on - strand at 5271.229 kb on + strand at 5271.276 kb on - strand at 5271.288 kb on + strand at 5272.299 kb on - strand at 5272.305 kb on - strand at 5272.347 kb on + strand at 5272.353 kb on + strand at 5272.362 kb on - strand at 5272.362 kb on - strand at 5272.412 kb on + strand at 5272.643 kb on + strand, within Echvi_4409 at 5272.643 kb on + strand, within Echvi_4409 at 5272.643 kb on + strand, within Echvi_4409 at 5272.644 kb on - strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.755 kb on + strand, within Echvi_4409 at 5272.883 kb on + strand, within Echvi_4409 at 5272.884 kb on - strand, within Echvi_4409 at 5272.910 kb on - strand, within Echvi_4409 at 5272.938 kb on - strand, within Echvi_4409 at 5272.970 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5273.032 kb on + strand, within Echvi_4409 at 5273.032 kb on + strand, within Echvi_4409 at 5273.077 kb on + strand, within Echvi_4409 at 5273.077 kb on + strand, within Echvi_4409 at 5273.078 kb on - strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,270,336 - +1.7 5,270,338 + +1.5 5,270,341 + -0.1 5,270,342 - -1.3 5,270,342 - -1.0 5,270,403 + -2.4 5,270,403 + +0.8 5,270,410 + +2.7 5,270,477 + -2.4 5,270,512 + -1.3 5,270,529 - -1.5 5,270,667 + Echvi_4407 0.25 +1.9 5,270,688 + Echvi_4407 0.28 +1.4 5,270,774 - Echvi_4407 0.39 -1.1 5,270,774 - Echvi_4407 0.39 +0.6 5,270,788 + Echvi_4407 0.41 -2.3 5,270,788 + Echvi_4407 0.41 -2.3 5,270,821 + Echvi_4407 0.45 +0.8 5,270,822 - Echvi_4407 0.45 +0.0 5,270,858 + Echvi_4407 0.50 -1.2 5,270,858 + Echvi_4407 0.50 +1.1 5,270,859 - Echvi_4407 0.50 -0.5 5,270,883 - Echvi_4407 0.53 +0.4 5,271,073 + Echvi_4407 0.78 +1.0 5,271,149 - Echvi_4407 0.88 +2.1 5,271,164 + +2.6 5,271,195 + -2.7 5,271,195 + -2.2 5,271,195 + +0.8 5,271,196 - +1.4 5,271,196 - +2.8 5,271,219 + -0.3 5,271,219 + +0.6 5,271,219 + +0.8 5,271,220 - -0.4 5,271,220 - +0.7 5,271,220 - +2.1 5,271,229 + -2.4 5,271,276 - -1.5 5,271,288 + +1.2 5,272,299 - +1.1 5,272,305 - -1.9 5,272,347 + +1.6 5,272,353 + +2.4 5,272,362 - -0.2 5,272,362 - +1.7 5,272,412 + +3.8 5,272,643 + Echvi_4409 0.30 -0.8 5,272,643 + Echvi_4409 0.30 -2.0 5,272,643 + Echvi_4409 0.30 -0.2 5,272,644 - Echvi_4409 0.30 +1.8 5,272,721 + Echvi_4409 0.37 -2.4 5,272,721 + Echvi_4409 0.37 -0.5 5,272,721 + Echvi_4409 0.37 +0.5 5,272,726 - Echvi_4409 0.38 +0.2 5,272,726 - Echvi_4409 0.38 -0.8 5,272,726 - Echvi_4409 0.38 -2.4 5,272,755 + Echvi_4409 0.40 -1.2 5,272,883 + Echvi_4409 0.52 -1.9 5,272,884 - Echvi_4409 0.52 +0.0 5,272,910 - Echvi_4409 0.55 +1.8 5,272,938 - Echvi_4409 0.57 -2.0 5,272,970 - Echvi_4409 0.60 -2.2 5,272,998 - Echvi_4409 0.63 +4.1 5,272,998 - Echvi_4409 0.63 -0.2 5,272,998 - Echvi_4409 0.63 +1.1 5,273,032 + Echvi_4409 0.66 +0.0 5,273,032 + Echvi_4409 0.66 -2.8 5,273,077 + Echvi_4409 0.70 -0.3 5,273,077 + Echvi_4409 0.70 +1.7 5,273,078 - Echvi_4409 0.70 -0.6 5,273,187 + Echvi_4409 0.80 -2.5 5,273,187 + Echvi_4409 0.80 +0.4 5,273,187 + Echvi_4409 0.80 +0.7 5,273,188 - Echvi_4409 0.80 +3.7 5,273,188 - Echvi_4409 0.80 -1.6 5,273,188 - Echvi_4409 0.80 -2.5
Or see this region's nucleotide sequence