Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4381

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4379 and Echvi_4380 overlap by 1 nucleotidesEchvi_4380 and Echvi_4381 are separated by 330 nucleotidesEchvi_4381 and Echvi_4382 overlap by 1 nucleotides Echvi_4379: Echvi_4379 - Signal transduction histidine kinase, at 5,235,840 to 5,237,672 _4379 Echvi_4380: Echvi_4380 - hypothetical protein, at 5,237,672 to 5,237,866 _4380 Echvi_4381: Echvi_4381 - Type IV secretory pathway, VirD4 components, at 5,238,197 to 5,240,179 _4381 Echvi_4382: Echvi_4382 - Relaxase/Mobilisation nuclease domain., at 5,240,179 to 5,241,447 _4382 Position (kb) 5238 5239 5240 5241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.241 kb on - strand, within Echvi_4379at 5237.241 kb on - strand, within Echvi_4379at 5237.281 kb on + strand, within Echvi_4379at 5237.283 kb on + strand, within Echvi_4379at 5237.284 kb on - strand, within Echvi_4379at 5237.284 kb on - strand, within Echvi_4379at 5237.302 kb on + strand, within Echvi_4379at 5237.302 kb on + strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.323 kb on - strand, within Echvi_4379at 5237.418 kb on - strand, within Echvi_4379at 5237.418 kb on - strand, within Echvi_4379at 5237.451 kb on + strand, within Echvi_4379at 5237.452 kb on - strand, within Echvi_4379at 5237.461 kb on + strand, within Echvi_4379at 5237.461 kb on + strand, within Echvi_4379at 5237.488 kb on - strand, within Echvi_4379at 5237.627 kb on - strandat 5237.710 kb on + strand, within Echvi_4380at 5237.813 kb on + strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.836 kb on - strand, within Echvi_4380at 5237.847 kb on - strandat 5237.848 kb on + strandat 5237.857 kb on + strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.907 kb on - strandat 5237.910 kb on + strandat 5237.924 kb on - strandat 5237.928 kb on - strandat 5238.014 kb on + strandat 5238.058 kb on + strandat 5238.058 kb on + strandat 5238.058 kb on + strandat 5238.059 kb on - strandat 5238.114 kb on + strandat 5238.115 kb on - strandat 5238.120 kb on - strandat 5238.135 kb on + strandat 5238.135 kb on + strandat 5238.263 kb on + strandat 5238.484 kb on + strand, within Echvi_4381at 5238.512 kb on + strand, within Echvi_4381at 5238.532 kb on + strand, within Echvi_4381at 5238.679 kb on - strand, within Echvi_4381at 5238.853 kb on + strand, within Echvi_4381at 5238.854 kb on - strand, within Echvi_4381at 5238.856 kb on - strand, within Echvi_4381at 5238.876 kb on + strand, within Echvi_4381at 5238.876 kb on + strand, within Echvi_4381at 5238.911 kb on + strand, within Echvi_4381at 5238.912 kb on - strand, within Echvi_4381at 5238.912 kb on - strand, within Echvi_4381at 5238.949 kb on + strand, within Echvi_4381at 5238.972 kb on + strand, within Echvi_4381at 5238.973 kb on - strand, within Echvi_4381at 5238.973 kb on - strand, within Echvi_4381at 5239.057 kb on + strand, within Echvi_4381at 5239.091 kb on + strand, within Echvi_4381at 5239.136 kb on + strand, within Echvi_4381at 5239.168 kb on + strand, within Echvi_4381at 5239.169 kb on - strand, within Echvi_4381at 5239.169 kb on - strand, within Echvi_4381at 5239.173 kb on + strand, within Echvi_4381at 5239.173 kb on + strand, within Echvi_4381at 5239.174 kb on - strand, within Echvi_4381at 5239.174 kb on - strand, within Echvi_4381at 5239.188 kb on + strand, within Echvi_4381at 5239.262 kb on - strand, within Echvi_4381at 5239.392 kb on + strand, within Echvi_4381at 5239.392 kb on + strand, within Echvi_4381at 5239.393 kb on - strand, within Echvi_4381at 5239.393 kb on - strand, within Echvi_4381at 5239.406 kb on + strand, within Echvi_4381at 5239.441 kb on + strand, within Echvi_4381at 5239.443 kb on + strand, within Echvi_4381at 5239.483 kb on + strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.484 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.506 kb on - strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.539 kb on + strand, within Echvi_4381at 5239.635 kb on + strand, within Echvi_4381at 5239.636 kb on - strand, within Echvi_4381at 5239.637 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.756 kb on + strand, within Echvi_4381at 5239.757 kb on - strand, within Echvi_4381at 5239.757 kb on - strand, within Echvi_4381at 5239.770 kb on - strand, within Echvi_4381at 5239.777 kb on + strand, within Echvi_4381at 5239.777 kb on + strand, within Echvi_4381at 5239.778 kb on - strand, within Echvi_4381at 5239.783 kb on - strand, within Echvi_4381at 5239.806 kb on + strand, within Echvi_4381at 5239.838 kb on + strand, within Echvi_4381at 5239.914 kb on - strand, within Echvi_4381at 5239.956 kb on + strand, within Echvi_4381at 5239.956 kb on + strand, within Echvi_4381at 5239.957 kb on - strand, within Echvi_4381at 5239.957 kb on - strand, within Echvi_4381at 5239.973 kb on + strand, within Echvi_4381at 5239.976 kb on + strand, within Echvi_4381at 5240.033 kb on + strandat 5240.033 kb on + strandat 5240.092 kb on - strandat 5240.120 kb on + strandat 5240.120 kb on + strandat 5240.120 kb on + strandat 5240.121 kb on - strandat 5240.146 kb on + strandat 5240.181 kb on - strandat 5240.229 kb on + strandat 5240.229 kb on + strandat 5240.230 kb on - strandat 5240.421 kb on + strand, within Echvi_4382at 5240.422 kb on - strand, within Echvi_4382at 5240.495 kb on - strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.590 kb on + strand, within Echvi_4382at 5240.683 kb on - strand, within Echvi_4382at 5240.765 kb on + strand, within Echvi_4382at 5240.857 kb on + strand, within Echvi_4382at 5240.871 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.928 kb on + strand, within Echvi_4382at 5240.929 kb on - strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.090 kb on + strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.091 kb on - strand, within Echvi_4382at 5241.093 kb on + strand, within Echvi_4382at 5241.094 kb on - strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.106 kb on + strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.107 kb on - strand, within Echvi_4382at 5241.120 kb on - strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.123 kb on + strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.124 kb on - strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.129 kb on + strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.130 kb on - strand, within Echvi_4382at 5241.179 kb on + strand, within Echvi_4382

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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5,237,238 + Echvi_4379 0.76 +2.9
5,237,238 + Echvi_4379 0.76 +1.6
5,237,238 + Echvi_4379 0.76 +4.4
5,237,238 + Echvi_4379 0.76 -2.2
5,237,239 - Echvi_4379 0.76 +4.4
5,237,239 - Echvi_4379 0.76 -0.6
5,237,239 - Echvi_4379 0.76 +1.8
5,237,239 - Echvi_4379 0.76 -1.0
5,237,241 - Echvi_4379 0.76 -1.1
5,237,241 - Echvi_4379 0.76 +1.1
5,237,281 + Echvi_4379 0.79 +1.4
5,237,283 + Echvi_4379 0.79 -0.6
5,237,284 - Echvi_4379 0.79 +1.4
5,237,284 - Echvi_4379 0.79 +3.7
5,237,302 + Echvi_4379 0.80 -2.3
5,237,302 + Echvi_4379 0.80 -1.0
5,237,303 - Echvi_4379 0.80 +0.8
5,237,303 - Echvi_4379 0.80 +1.5
5,237,303 - Echvi_4379 0.80 +0.7
5,237,303 - Echvi_4379 0.80 -0.4
5,237,323 - Echvi_4379 0.81 +1.0
5,237,418 - Echvi_4379 0.86 +0.5
5,237,418 - Echvi_4379 0.86 -2.0
5,237,451 + Echvi_4379 0.88 +0.5
5,237,452 - Echvi_4379 0.88 -1.0
5,237,461 + Echvi_4379 0.88 +2.4
5,237,461 + Echvi_4379 0.88 -0.7
5,237,488 - Echvi_4379 0.90 -1.5
5,237,627 - +0.9
5,237,710 + Echvi_4380 0.19 -2.0
5,237,813 + Echvi_4380 0.72 +1.9
5,237,819 - Echvi_4380 0.75 +2.4
5,237,819 - Echvi_4380 0.75 -1.3
5,237,819 - Echvi_4380 0.75 -0.7
5,237,836 - Echvi_4380 0.84 +0.0
5,237,847 - +0.5
5,237,848 + +0.3
5,237,857 + +0.0
5,237,858 - -0.8
5,237,858 - +1.8
5,237,858 - +0.7
5,237,858 - +1.0
5,237,907 - -1.6
5,237,910 + -1.6
5,237,924 - -0.8
5,237,928 - -1.9
5,238,014 + -0.8
5,238,058 + +0.0
5,238,058 + +0.0
5,238,058 + +1.1
5,238,059 - -0.3
5,238,114 + +2.0
5,238,115 - -1.5
5,238,120 - -0.7
5,238,135 + -2.2
5,238,135 + +1.8
5,238,263 + +1.7
5,238,484 + Echvi_4381 0.14 +0.7
5,238,512 + Echvi_4381 0.16 +0.9
5,238,532 + Echvi_4381 0.17 +1.6
5,238,679 - Echvi_4381 0.24 -0.6
5,238,853 + Echvi_4381 0.33 +0.3
5,238,854 - Echvi_4381 0.33 -1.6
5,238,856 - Echvi_4381 0.33 +1.6
5,238,876 + Echvi_4381 0.34 -0.2
5,238,876 + Echvi_4381 0.34 -1.6
5,238,911 + Echvi_4381 0.36 -2.8
5,238,912 - Echvi_4381 0.36 +1.8
5,238,912 - Echvi_4381 0.36 +1.4
5,238,949 + Echvi_4381 0.38 +0.6
5,238,972 + Echvi_4381 0.39 +0.0
5,238,973 - Echvi_4381 0.39 +0.4
5,238,973 - Echvi_4381 0.39 +0.6
5,239,057 + Echvi_4381 0.43 -1.7
5,239,091 + Echvi_4381 0.45 +1.4
5,239,136 + Echvi_4381 0.47 +0.1
5,239,168 + Echvi_4381 0.49 +1.4
5,239,169 - Echvi_4381 0.49 -2.6
5,239,169 - Echvi_4381 0.49 +2.5
5,239,173 + Echvi_4381 0.49 -0.5
5,239,173 + Echvi_4381 0.49 +0.5
5,239,174 - Echvi_4381 0.49 +2.9
5,239,174 - Echvi_4381 0.49 -1.1
5,239,188 + Echvi_4381 0.50 +1.3
5,239,262 - Echvi_4381 0.54 +1.4
5,239,392 + Echvi_4381 0.60 -1.9
5,239,392 + Echvi_4381 0.60 -1.1
5,239,393 - Echvi_4381 0.60 -2.9
5,239,393 - Echvi_4381 0.60 -1.6
5,239,406 + Echvi_4381 0.61 -1.1
5,239,441 + Echvi_4381 0.63 +1.5
5,239,443 + Echvi_4381 0.63 +0.4
5,239,483 + Echvi_4381 0.65 -0.7
5,239,484 - Echvi_4381 0.65 -0.4
5,239,484 - Echvi_4381 0.65 +1.5
5,239,484 - Echvi_4381 0.65 -1.6
5,239,506 - Echvi_4381 0.66 +2.2
5,239,506 - Echvi_4381 0.66 +1.6
5,239,506 - Echvi_4381 0.66 -0.3
5,239,506 - Echvi_4381 0.66 +1.1
5,239,539 + Echvi_4381 0.68 +0.0
5,239,539 + Echvi_4381 0.68 -1.8
5,239,539 + Echvi_4381 0.68 +2.2
5,239,635 + Echvi_4381 0.73 +0.2
5,239,636 - Echvi_4381 0.73 +2.4
5,239,637 + Echvi_4381 0.73 +0.9
5,239,756 + Echvi_4381 0.79 +1.0
5,239,756 + Echvi_4381 0.79 -2.5
5,239,756 + Echvi_4381 0.79 +2.0
5,239,756 + Echvi_4381 0.79 -0.1
5,239,757 - Echvi_4381 0.79 +0.8
5,239,757 - Echvi_4381 0.79 -1.6
5,239,770 - Echvi_4381 0.79 +0.0
5,239,777 + Echvi_4381 0.80 -0.3
5,239,777 + Echvi_4381 0.80 -2.2
5,239,778 - Echvi_4381 0.80 +2.3
5,239,783 - Echvi_4381 0.80 -3.8
5,239,806 + Echvi_4381 0.81 -0.8
5,239,838 + Echvi_4381 0.83 -0.5
5,239,914 - Echvi_4381 0.87 -0.5
5,239,956 + Echvi_4381 0.89 +1.8
5,239,956 + Echvi_4381 0.89 +2.1
5,239,957 - Echvi_4381 0.89 +0.0
5,239,957 - Echvi_4381 0.89 -0.1
5,239,973 + Echvi_4381 0.90 +0.4
5,239,976 + Echvi_4381 0.90 -0.1
5,240,033 + +2.2
5,240,033 + -2.4
5,240,092 - +0.1
5,240,120 + +1.4
5,240,120 + +4.1
5,240,120 + +1.7
5,240,121 - -1.5
5,240,146 + +0.9
5,240,181 - -0.6
5,240,229 + -1.6
5,240,229 + +0.1
5,240,230 - +1.0
5,240,421 + Echvi_4382 0.19 +2.3
5,240,422 - Echvi_4382 0.19 +1.1
5,240,495 - Echvi_4382 0.25 -0.6
5,240,590 + Echvi_4382 0.32 +0.6
5,240,590 + Echvi_4382 0.32 +1.5
5,240,683 - Echvi_4382 0.40 +0.2
5,240,765 + Echvi_4382 0.46 -0.2
5,240,857 + Echvi_4382 0.53 -3.3
5,240,871 + Echvi_4382 0.55 +0.4
5,240,928 + Echvi_4382 0.59 +1.2
5,240,928 + Echvi_4382 0.59 -0.2
5,240,929 - Echvi_4382 0.59 +0.2
5,241,090 + Echvi_4382 0.72 +0.4
5,241,090 + Echvi_4382 0.72 -2.0
5,241,091 - Echvi_4382 0.72 -1.9
5,241,091 - Echvi_4382 0.72 -0.0
5,241,091 - Echvi_4382 0.72 -3.2
5,241,093 + Echvi_4382 0.72 +3.4
5,241,094 - Echvi_4382 0.72 -0.8
5,241,106 + Echvi_4382 0.73 -2.1
5,241,106 + Echvi_4382 0.73 +0.1
5,241,106 + Echvi_4382 0.73 -0.8
5,241,106 + Echvi_4382 0.73 +0.6
5,241,106 + Echvi_4382 0.73 +2.5
5,241,106 + Echvi_4382 0.73 +0.4
5,241,106 + Echvi_4382 0.73 -2.2
5,241,107 - Echvi_4382 0.73 -0.2
5,241,107 - Echvi_4382 0.73 +0.3
5,241,107 - Echvi_4382 0.73 +1.0
5,241,107 - Echvi_4382 0.73 +2.1
5,241,107 - Echvi_4382 0.73 -1.0
5,241,107 - Echvi_4382 0.73 -1.6
5,241,107 - Echvi_4382 0.73 +0.8
5,241,107 - Echvi_4382 0.73 -0.3
5,241,107 - Echvi_4382 0.73 +0.7
5,241,120 - Echvi_4382 0.74 +0.1
5,241,123 + Echvi_4382 0.74 -2.2
5,241,123 + Echvi_4382 0.74 +2.8
5,241,123 + Echvi_4382 0.74 -1.7
5,241,123 + Echvi_4382 0.74 +2.1
5,241,124 - Echvi_4382 0.74 -0.6
5,241,124 - Echvi_4382 0.74 +1.9
5,241,129 + Echvi_4382 0.75 +1.1
5,241,129 + Echvi_4382 0.75 -1.6
5,241,130 - Echvi_4382 0.75 +0.0
5,241,130 - Echvi_4382 0.75 +1.9
5,241,179 + Echvi_4382 0.79 +2.3

Or see this region's nucleotide sequence