Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4368 and Echvi_4369 are separated by 37 nucleotides Echvi_4369 and Echvi_4370 are separated by 97 nucleotides Echvi_4370 and Echvi_4371 are separated by 166 nucleotides
Echvi_4368: Echvi_4368 - Cyclic nucleotide-binding domain., at 5,223,214 to 5,224,743
_4368
Echvi_4369: Echvi_4369 - hypothetical protein, at 5,224,781 to 5,224,918
_4369
Echvi_4370: Echvi_4370 - hypothetical protein, at 5,225,016 to 5,225,447
_4370
Echvi_4371: Echvi_4371 - hypothetical protein, at 5,225,614 to 5,225,883
_4371
Position (kb) 5224
5225 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5223.803 kb on + strand, within Echvi_4368 at 5223.804 kb on - strand, within Echvi_4368 at 5223.823 kb on + strand, within Echvi_4368 at 5223.860 kb on - strand, within Echvi_4368 at 5223.860 kb on - strand, within Echvi_4368 at 5223.915 kb on - strand, within Echvi_4368 at 5223.994 kb on + strand, within Echvi_4368 at 5223.994 kb on + strand, within Echvi_4368 at 5224.271 kb on - strand, within Echvi_4368 at 5224.372 kb on + strand, within Echvi_4368 at 5224.515 kb on - strand, within Echvi_4368 at 5224.744 kb on - strand at 5224.755 kb on + strand at 5224.848 kb on + strand, within Echvi_4369 at 5224.917 kb on - strand at 5225.050 kb on + strand at 5225.050 kb on + strand at 5225.050 kb on + strand at 5225.073 kb on + strand, within Echvi_4370 at 5225.074 kb on - strand, within Echvi_4370 at 5225.094 kb on - strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.127 kb on + strand, within Echvi_4370 at 5225.127 kb on + strand, within Echvi_4370 at 5225.292 kb on + strand, within Echvi_4370 at 5225.293 kb on - strand, within Echvi_4370 at 5225.293 kb on - strand, within Echvi_4370 at 5225.362 kb on + strand, within Echvi_4370 at 5225.363 kb on - strand, within Echvi_4370 at 5225.363 kb on - strand, within Echvi_4370 at 5225.381 kb on - strand, within Echvi_4370 at 5225.381 kb on - strand, within Echvi_4370 at 5225.399 kb on + strand, within Echvi_4370 at 5225.400 kb on - strand, within Echvi_4370 at 5225.400 kb on - strand, within Echvi_4370 at 5225.401 kb on + strand, within Echvi_4370 at 5225.414 kb on - strand at 5225.417 kb on - strand at 5225.417 kb on - strand at 5225.434 kb on + strand at 5225.462 kb on + strand at 5225.462 kb on + strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.492 kb on + strand at 5225.503 kb on - strand at 5225.553 kb on + strand at 5225.568 kb on + strand at 5225.654 kb on + strand, within Echvi_4371 at 5225.655 kb on - strand, within Echvi_4371 at 5225.736 kb on + strand, within Echvi_4371 at 5225.779 kb on + strand, within Echvi_4371 at 5225.781 kb on + strand, within Echvi_4371 at 5225.812 kb on - strand, within Echvi_4371 at 5225.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 5,223,803 + Echvi_4368 0.38 +0.5 5,223,804 - Echvi_4368 0.39 -0.5 5,223,823 + Echvi_4368 0.40 +2.5 5,223,860 - Echvi_4368 0.42 -2.0 5,223,860 - Echvi_4368 0.42 -2.6 5,223,915 - Echvi_4368 0.46 +0.1 5,223,994 + Echvi_4368 0.51 +0.2 5,223,994 + Echvi_4368 0.51 -0.6 5,224,271 - Echvi_4368 0.69 -1.3 5,224,372 + Echvi_4368 0.76 -1.7 5,224,515 - Echvi_4368 0.85 -0.5 5,224,744 - -1.6 5,224,755 + +0.4 5,224,848 + Echvi_4369 0.49 -2.8 5,224,917 - -1.8 5,225,050 + +0.2 5,225,050 + +2.5 5,225,050 + +0.8 5,225,073 + Echvi_4370 0.13 +0.4 5,225,074 - Echvi_4370 0.13 +2.5 5,225,094 - Echvi_4370 0.18 -1.3 5,225,123 + Echvi_4370 0.25 +0.8 5,225,123 + Echvi_4370 0.25 -3.3 5,225,123 + Echvi_4370 0.25 -1.0 5,225,127 + Echvi_4370 0.26 -0.2 5,225,127 + Echvi_4370 0.26 -0.7 5,225,292 + Echvi_4370 0.64 +0.4 5,225,293 - Echvi_4370 0.64 -0.2 5,225,293 - Echvi_4370 0.64 -1.1 5,225,362 + Echvi_4370 0.80 +2.4 5,225,363 - Echvi_4370 0.80 +0.8 5,225,363 - Echvi_4370 0.80 -0.0 5,225,381 - Echvi_4370 0.84 +0.5 5,225,381 - Echvi_4370 0.84 -2.4 5,225,399 + Echvi_4370 0.89 -1.2 5,225,400 - Echvi_4370 0.89 +0.4 5,225,400 - Echvi_4370 0.89 -1.3 5,225,401 + Echvi_4370 0.89 +0.0 5,225,414 - -1.1 5,225,417 - +1.4 5,225,417 - +0.1 5,225,434 + -2.5 5,225,462 + -3.0 5,225,462 + -1.0 5,225,463 - +0.6 5,225,463 - -0.8 5,225,463 - +3.3 5,225,463 - +0.7 5,225,492 + -1.3 5,225,503 - -0.7 5,225,553 + +0.3 5,225,568 + +2.1 5,225,654 + Echvi_4371 0.15 +0.9 5,225,655 - Echvi_4371 0.15 +1.3 5,225,736 + Echvi_4371 0.45 +0.4 5,225,779 + Echvi_4371 0.61 -0.2 5,225,781 + Echvi_4371 0.62 -0.6 5,225,812 - Echvi_4371 0.73 -0.4 5,225,870 - +0.4
Or see this region's nucleotide sequence