Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4324

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4323 and Echvi_4324 are separated by 90 nucleotidesEchvi_4324 and Echvi_4325 are separated by 109 nucleotidesEchvi_4325 and Echvi_4326 are separated by 138 nucleotides Echvi_4323: Echvi_4323 - Fe2+-dicitrate sensor, membrane component, at 5,168,120 to 5,169,091 _4323 Echvi_4324: Echvi_4324 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 5,169,182 to 5,169,745 _4324 Echvi_4325: Echvi_4325 - hypothetical protein, at 5,169,855 to 5,170,100 _4325 Echvi_4326: Echvi_4326 - TonB-dependent siderophore receptor, at 5,170,239 to 5,172,590 _4326 Position (kb) 5169 5170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5168.239 kb on + strand, within Echvi_4323at 5168.348 kb on + strand, within Echvi_4323at 5168.348 kb on + strand, within Echvi_4323at 5168.351 kb on - strand, within Echvi_4323at 5168.402 kb on + strand, within Echvi_4323at 5168.402 kb on + strand, within Echvi_4323at 5168.484 kb on - strand, within Echvi_4323at 5168.545 kb on + strand, within Echvi_4323at 5168.546 kb on - strand, within Echvi_4323at 5168.569 kb on + strand, within Echvi_4323at 5168.618 kb on + strand, within Echvi_4323at 5168.618 kb on + strand, within Echvi_4323at 5168.654 kb on - strand, within Echvi_4323at 5168.687 kb on - strand, within Echvi_4323at 5168.728 kb on + strand, within Echvi_4323at 5168.792 kb on + strand, within Echvi_4323at 5168.797 kb on + strand, within Echvi_4323at 5168.802 kb on + strand, within Echvi_4323at 5168.992 kb on - strand, within Echvi_4323at 5168.993 kb on + strand, within Echvi_4323at 5168.993 kb on + strand, within Echvi_4323at 5168.994 kb on - strandat 5169.115 kb on - strandat 5169.115 kb on - strandat 5169.117 kb on + strandat 5169.118 kb on - strandat 5169.136 kb on + strandat 5169.203 kb on + strandat 5169.224 kb on + strandat 5169.335 kb on + strand, within Echvi_4324at 5169.342 kb on + strand, within Echvi_4324at 5169.352 kb on + strand, within Echvi_4324at 5169.353 kb on - strand, within Echvi_4324at 5169.353 kb on - strand, within Echvi_4324at 5169.377 kb on - strand, within Echvi_4324at 5169.380 kb on - strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.444 kb on + strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.445 kb on - strand, within Echvi_4324at 5169.446 kb on + strand, within Echvi_4324at 5169.446 kb on + strand, within Echvi_4324at 5169.447 kb on - strand, within Echvi_4324at 5169.515 kb on + strand, within Echvi_4324at 5169.526 kb on - strand, within Echvi_4324at 5169.532 kb on - strand, within Echvi_4324at 5169.540 kb on - strand, within Echvi_4324at 5169.575 kb on + strand, within Echvi_4324at 5169.599 kb on + strand, within Echvi_4324at 5169.602 kb on - strand, within Echvi_4324at 5169.734 kb on + strandat 5169.735 kb on - strandat 5169.758 kb on + strandat 5169.788 kb on - strandat 5169.942 kb on + strand, within Echvi_4325at 5169.942 kb on + strand, within Echvi_4325at 5169.943 kb on - strand, within Echvi_4325at 5170.048 kb on - strand, within Echvi_4325at 5170.056 kb on - strand, within Echvi_4325at 5170.097 kb on - strandat 5170.099 kb on - strandat 5170.325 kb on + strandat 5170.326 kb on - strandat 5170.326 kb on - strandat 5170.326 kb on - strandat 5170.388 kb on + strandat 5170.389 kb on - strandat 5170.389 kb on - strandat 5170.389 kb on - strandat 5170.390 kb on + strandat 5170.390 kb on + strandat 5170.441 kb on + strandat 5170.441 kb on + strandat 5170.442 kb on - strandat 5170.442 kb on - strandat 5170.442 kb on - strandat 5170.577 kb on + strand, within Echvi_4326at 5170.713 kb on - strand, within Echvi_4326at 5170.729 kb on + strand, within Echvi_4326at 5170.730 kb on - strand, within Echvi_4326at 5170.732 kb on + strand, within Echvi_4326at 5170.732 kb on + strand, within Echvi_4326at 5170.733 kb on - strand, within Echvi_4326at 5170.733 kb on - strand, within Echvi_4326

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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5,168,239 + Echvi_4323 0.12 +1.3
5,168,348 + Echvi_4323 0.23 -3.4
5,168,348 + Echvi_4323 0.23 -0.9
5,168,351 - Echvi_4323 0.24 -0.0
5,168,402 + Echvi_4323 0.29 -1.4
5,168,402 + Echvi_4323 0.29 +1.7
5,168,484 - Echvi_4323 0.37 +0.1
5,168,545 + Echvi_4323 0.44 +2.3
5,168,546 - Echvi_4323 0.44 +0.9
5,168,569 + Echvi_4323 0.46 +3.0
5,168,618 + Echvi_4323 0.51 -1.8
5,168,618 + Echvi_4323 0.51 -1.5
5,168,654 - Echvi_4323 0.55 -1.3
5,168,687 - Echvi_4323 0.58 -1.7
5,168,728 + Echvi_4323 0.63 +1.2
5,168,792 + Echvi_4323 0.69 +1.2
5,168,797 + Echvi_4323 0.70 +1.9
5,168,802 + Echvi_4323 0.70 +1.0
5,168,992 - Echvi_4323 0.90 -0.9
5,168,993 + Echvi_4323 0.90 -1.2
5,168,993 + Echvi_4323 0.90 +0.8
5,168,994 - -0.0
5,169,115 - +0.3
5,169,115 - -0.9
5,169,117 + -0.6
5,169,118 - -1.3
5,169,136 + +1.0
5,169,203 + -1.8
5,169,224 + -1.9
5,169,335 + Echvi_4324 0.27 +1.0
5,169,342 + Echvi_4324 0.28 +2.6
5,169,352 + Echvi_4324 0.30 -1.2
5,169,353 - Echvi_4324 0.30 -1.9
5,169,353 - Echvi_4324 0.30 -0.3
5,169,377 - Echvi_4324 0.35 -1.6
5,169,380 - Echvi_4324 0.35 -0.9
5,169,444 + Echvi_4324 0.46 -0.3
5,169,444 + Echvi_4324 0.46 +0.5
5,169,444 + Echvi_4324 0.46 -1.3
5,169,444 + Echvi_4324 0.46 +1.0
5,169,444 + Echvi_4324 0.46 -2.2
5,169,444 + Echvi_4324 0.46 -1.7
5,169,444 + Echvi_4324 0.46 -2.0
5,169,445 - Echvi_4324 0.47 -2.6
5,169,445 - Echvi_4324 0.47 +2.3
5,169,445 - Echvi_4324 0.47 -1.9
5,169,445 - Echvi_4324 0.47 -3.7
5,169,445 - Echvi_4324 0.47 -0.3
5,169,445 - Echvi_4324 0.47 +1.5
5,169,446 + Echvi_4324 0.47 -1.8
5,169,446 + Echvi_4324 0.47 -0.2
5,169,447 - Echvi_4324 0.47 -1.8
5,169,515 + Echvi_4324 0.59 +0.8
5,169,526 - Echvi_4324 0.61 +2.3
5,169,532 - Echvi_4324 0.62 -1.0
5,169,540 - Echvi_4324 0.63 -2.1
5,169,575 + Echvi_4324 0.70 -2.3
5,169,599 + Echvi_4324 0.74 -3.4
5,169,602 - Echvi_4324 0.74 -1.6
5,169,734 + +0.0
5,169,735 - -1.7
5,169,758 + +1.0
5,169,788 - +1.7
5,169,942 + Echvi_4325 0.35 -0.3
5,169,942 + Echvi_4325 0.35 -1.6
5,169,943 - Echvi_4325 0.36 +0.2
5,170,048 - Echvi_4325 0.78 -0.8
5,170,056 - Echvi_4325 0.82 +0.6
5,170,097 - -1.8
5,170,099 - +1.5
5,170,325 + +0.3
5,170,326 - -2.3
5,170,326 - +0.7
5,170,326 - +0.3
5,170,388 + -1.2
5,170,389 - -0.0
5,170,389 - -0.7
5,170,389 - +2.1
5,170,390 + +0.7
5,170,390 + -2.7
5,170,441 + +2.4
5,170,441 + -1.2
5,170,442 - -0.4
5,170,442 - -1.9
5,170,442 - +1.5
5,170,577 + Echvi_4326 0.14 +0.9
5,170,713 - Echvi_4326 0.20 +0.2
5,170,729 + Echvi_4326 0.21 -0.5
5,170,730 - Echvi_4326 0.21 +0.9
5,170,732 + Echvi_4326 0.21 +1.6
5,170,732 + Echvi_4326 0.21 -2.2
5,170,733 - Echvi_4326 0.21 -0.5
5,170,733 - Echvi_4326 0.21 -1.7

Or see this region's nucleotide sequence