Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4284

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4283 and Echvi_4284 are separated by 16 nucleotidesEchvi_4284 and Echvi_4285 are separated by 13 nucleotidesEchvi_4286 and Echvi_4287 overlap by 1 nucleotides Echvi_4283: Echvi_4283 - hypothetical protein, at 5,128,152 to 5,129,039 _4283 Echvi_4284: Echvi_4284 - Periplasmic protease, at 5,129,056 to 5,130,444 _4284 Echvi_4285: Echvi_4285 - hypothetical protein, at 5,130,458 to 5,133,657 _4285 Echvi_4286: Echvi_4286 - hypothetical protein, at 5,130,938 to 5,131,225 _4286 Echvi_4287: Echvi_4287 - Transposase and inactivated derivatives, at 5,131,225 to 5,131,566 _4287 Position (kb) 5129 5130 5131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5128.060 kb on + strandat 5128.060 kb on + strandat 5128.061 kb on - strandat 5128.061 kb on - strandat 5128.065 kb on + strandat 5128.065 kb on + strandat 5128.066 kb on - strandat 5128.066 kb on - strandat 5128.066 kb on - strandat 5128.079 kb on - strandat 5128.091 kb on - strandat 5128.127 kb on - strandat 5128.127 kb on - strandat 5129.035 kb on + strandat 5129.043 kb on + strandat 5129.057 kb on + strandat 5129.069 kb on - strandat 5129.069 kb on - strandat 5129.069 kb on - strandat 5129.106 kb on + strandat 5129.135 kb on + strandat 5129.135 kb on + strandat 5129.136 kb on - strandat 5129.139 kb on + strandat 5129.139 kb on + strandat 5129.140 kb on - strandat 5129.140 kb on - strandat 5129.144 kb on - strandat 5129.161 kb on - strandat 5129.185 kb on + strandat 5129.186 kb on - strandat 5129.186 kb on - strandat 5129.192 kb on + strandat 5129.193 kb on - strandat 5129.204 kb on + strand, within Echvi_4284at 5129.214 kb on + strand, within Echvi_4284at 5129.257 kb on + strand, within Echvi_4284at 5129.282 kb on - strand, within Echvi_4284at 5129.324 kb on - strand, within Echvi_4284at 5129.324 kb on - strand, within Echvi_4284at 5129.324 kb on - strand, within Echvi_4284at 5129.330 kb on + strand, within Echvi_4284at 5129.331 kb on - strand, within Echvi_4284at 5129.331 kb on - strand, within Echvi_4284at 5129.391 kb on + strand, within Echvi_4284at 5129.391 kb on + strand, within Echvi_4284at 5129.433 kb on - strand, within Echvi_4284at 5129.451 kb on + strand, within Echvi_4284at 5129.466 kb on + strand, within Echvi_4284at 5129.466 kb on + strand, within Echvi_4284at 5129.473 kb on + strand, within Echvi_4284at 5129.556 kb on - strand, within Echvi_4284at 5129.562 kb on + strand, within Echvi_4284at 5129.562 kb on + strand, within Echvi_4284at 5129.563 kb on - strand, within Echvi_4284at 5129.599 kb on - strand, within Echvi_4284at 5129.606 kb on - strand, within Echvi_4284at 5129.608 kb on + strand, within Echvi_4284at 5129.611 kb on + strand, within Echvi_4284at 5129.656 kb on + strand, within Echvi_4284at 5129.707 kb on + strand, within Echvi_4284at 5129.707 kb on + strand, within Echvi_4284at 5129.708 kb on - strand, within Echvi_4284at 5129.708 kb on - strand, within Echvi_4284at 5129.728 kb on + strand, within Echvi_4284at 5129.733 kb on - strand, within Echvi_4284at 5129.759 kb on - strand, within Echvi_4284at 5129.801 kb on + strand, within Echvi_4284at 5129.803 kb on + strand, within Echvi_4284at 5129.803 kb on + strand, within Echvi_4284at 5129.803 kb on + strand, within Echvi_4284at 5129.804 kb on - strand, within Echvi_4284at 5129.826 kb on + strand, within Echvi_4284at 5129.827 kb on - strand, within Echvi_4284at 5129.881 kb on - strand, within Echvi_4284at 5129.939 kb on + strand, within Echvi_4284at 5129.939 kb on + strand, within Echvi_4284at 5129.951 kb on - strand, within Echvi_4284at 5130.014 kb on + strand, within Echvi_4284at 5130.015 kb on - strand, within Echvi_4284at 5130.015 kb on - strand, within Echvi_4284at 5130.015 kb on - strand, within Echvi_4284at 5130.023 kb on - strandat 5130.023 kb on - strand, within Echvi_4284at 5130.023 kb on - strand, within Echvi_4284at 5130.037 kb on - strand, within Echvi_4284at 5130.051 kb on + strandat 5130.052 kb on - strand, within Echvi_4284at 5130.052 kb on - strand, within Echvi_4284at 5130.052 kb on - strand, within Echvi_4284at 5130.060 kb on + strand, within Echvi_4284at 5130.060 kb on + strand, within Echvi_4284at 5130.060 kb on + strand, within Echvi_4284at 5130.061 kb on - strand, within Echvi_4284at 5130.067 kb on + strand, within Echvi_4284at 5130.068 kb on - strand, within Echvi_4284at 5130.111 kb on - strand, within Echvi_4284at 5130.111 kb on - strand, within Echvi_4284at 5130.111 kb on - strand, within Echvi_4284at 5130.112 kb on + strand, within Echvi_4284at 5130.112 kb on + strand, within Echvi_4284at 5130.112 kb on + strand, within Echvi_4284at 5130.113 kb on - strand, within Echvi_4284at 5130.113 kb on - strand, within Echvi_4284at 5130.125 kb on - strand, within Echvi_4284at 5130.149 kb on - strand, within Echvi_4284at 5130.157 kb on + strand, within Echvi_4284at 5130.182 kb on - strand, within Echvi_4284at 5130.182 kb on - strand, within Echvi_4284at 5130.187 kb on + strand, within Echvi_4284at 5130.187 kb on + strand, within Echvi_4284at 5130.222 kb on + strand, within Echvi_4284at 5130.222 kb on + strand, within Echvi_4284at 5130.225 kb on + strand, within Echvi_4284at 5130.226 kb on - strand, within Echvi_4284at 5130.232 kb on - strand, within Echvi_4284at 5130.253 kb on + strand, within Echvi_4284at 5130.292 kb on - strand, within Echvi_4284at 5130.316 kb on - strandat 5130.323 kb on + strandat 5130.324 kb on - strandat 5130.349 kb on - strandat 5130.367 kb on - strandat 5130.368 kb on + strandat 5130.368 kb on + strandat 5130.368 kb on + strandat 5130.369 kb on - strandat 5130.409 kb on + strandat 5130.449 kb on - strandat 5130.451 kb on - strandat 5130.451 kb on - strandat 5130.456 kb on - strandat 5130.459 kb on + strandat 5130.460 kb on - strandat 5130.531 kb on - strandat 5130.536 kb on + strandat 5130.536 kb on + strandat 5130.536 kb on + strandat 5130.536 kb on + strandat 5130.536 kb on + strandat 5130.573 kb on + strandat 5130.577 kb on + strandat 5130.577 kb on + strandat 5130.578 kb on - strandat 5130.583 kb on + strandat 5130.587 kb on - strandat 5130.594 kb on - strandat 5130.596 kb on - strandat 5130.608 kb on - strandat 5130.623 kb on + strandat 5130.650 kb on - strandat 5130.666 kb on - strandat 5130.728 kb on + strandat 5130.729 kb on - strandat 5130.735 kb on - strandat 5130.779 kb on + strand, within Echvi_4285at 5130.788 kb on + strand, within Echvi_4285at 5130.789 kb on - strand, within Echvi_4285at 5130.824 kb on + strand, within Echvi_4285at 5130.828 kb on - strand, within Echvi_4285at 5130.860 kb on + strand, within Echvi_4285at 5130.861 kb on - strand, within Echvi_4285at 5130.878 kb on - strand, within Echvi_4285

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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5,128,060 + -1.7
5,128,060 + +0.7
5,128,061 - -1.5
5,128,061 - -1.0
5,128,065 + +0.3
5,128,065 + +0.7
5,128,066 - +2.7
5,128,066 - -1.6
5,128,066 - -1.5
5,128,079 - +0.5
5,128,091 - -1.7
5,128,127 - -1.0
5,128,127 - -0.5
5,129,035 + -2.5
5,129,043 + +0.3
5,129,057 + +0.5
5,129,069 - +1.3
5,129,069 - +1.6
5,129,069 - +0.9
5,129,106 + -1.9
5,129,135 + -1.6
5,129,135 + +0.4
5,129,136 - -2.1
5,129,139 + -2.9
5,129,139 + +0.5
5,129,140 - +2.9
5,129,140 - -0.3
5,129,144 - +2.3
5,129,161 - -0.7
5,129,185 + +0.6
5,129,186 - +1.9
5,129,186 - -0.3
5,129,192 + +0.4
5,129,193 - +0.6
5,129,204 + Echvi_4284 0.11 +0.3
5,129,214 + Echvi_4284 0.11 -0.5
5,129,257 + Echvi_4284 0.14 +1.2
5,129,282 - Echvi_4284 0.16 -0.3
5,129,324 - Echvi_4284 0.19 +1.1
5,129,324 - Echvi_4284 0.19 +0.6
5,129,324 - Echvi_4284 0.19 -2.2
5,129,330 + Echvi_4284 0.20 +2.2
5,129,331 - Echvi_4284 0.20 -0.4
5,129,331 - Echvi_4284 0.20 -1.5
5,129,391 + Echvi_4284 0.24 -2.3
5,129,391 + Echvi_4284 0.24 -1.3
5,129,433 - Echvi_4284 0.27 +1.2
5,129,451 + Echvi_4284 0.28 -0.9
5,129,466 + Echvi_4284 0.30 -1.0
5,129,466 + Echvi_4284 0.30 -2.5
5,129,473 + Echvi_4284 0.30 -0.2
5,129,556 - Echvi_4284 0.36 +1.3
5,129,562 + Echvi_4284 0.36 -0.9
5,129,562 + Echvi_4284 0.36 -3.6
5,129,563 - Echvi_4284 0.37 -1.4
5,129,599 - Echvi_4284 0.39 +1.2
5,129,606 - Echvi_4284 0.40 -1.9
5,129,608 + Echvi_4284 0.40 +0.4
5,129,611 + Echvi_4284 0.40 +1.9
5,129,656 + Echvi_4284 0.43 -2.4
5,129,707 + Echvi_4284 0.47 -1.0
5,129,707 + Echvi_4284 0.47 -1.0
5,129,708 - Echvi_4284 0.47 -0.5
5,129,708 - Echvi_4284 0.47 -0.0
5,129,728 + Echvi_4284 0.48 -2.9
5,129,733 - Echvi_4284 0.49 +2.2
5,129,759 - Echvi_4284 0.51 +0.2
5,129,801 + Echvi_4284 0.54 -2.6
5,129,803 + Echvi_4284 0.54 +0.5
5,129,803 + Echvi_4284 0.54 +0.1
5,129,803 + Echvi_4284 0.54 -1.3
5,129,804 - Echvi_4284 0.54 -0.7
5,129,826 + Echvi_4284 0.55 +0.7
5,129,827 - Echvi_4284 0.56 -2.1
5,129,881 - Echvi_4284 0.59 +1.2
5,129,939 + Echvi_4284 0.64 -2.3
5,129,939 + Echvi_4284 0.64 +2.2
5,129,951 - Echvi_4284 0.64 -1.9
5,130,014 + Echvi_4284 0.69 -0.0
5,130,015 - Echvi_4284 0.69 -1.4
5,130,015 - Echvi_4284 0.69 -2.5
5,130,015 - Echvi_4284 0.69 +2.1
5,130,023 - +0.7
5,130,023 - Echvi_4284 0.70 -0.7
5,130,023 - Echvi_4284 0.70 -2.4
5,130,037 - Echvi_4284 0.71 -0.3
5,130,051 + +1.3
5,130,052 - Echvi_4284 0.72 -3.0
5,130,052 - Echvi_4284 0.72 -2.4
5,130,052 - Echvi_4284 0.72 +3.6
5,130,060 + Echvi_4284 0.72 -0.9
5,130,060 + Echvi_4284 0.72 -1.5
5,130,060 + Echvi_4284 0.72 +1.8
5,130,061 - Echvi_4284 0.72 -1.8
5,130,067 + Echvi_4284 0.73 +1.3
5,130,068 - Echvi_4284 0.73 -1.9
5,130,111 - Echvi_4284 0.76 +0.0
5,130,111 - Echvi_4284 0.76 -0.6
5,130,111 - Echvi_4284 0.76 -0.5
5,130,112 + Echvi_4284 0.76 +2.9
5,130,112 + Echvi_4284 0.76 -0.1
5,130,112 + Echvi_4284 0.76 +0.3
5,130,113 - Echvi_4284 0.76 -1.9
5,130,113 - Echvi_4284 0.76 -1.7
5,130,125 - Echvi_4284 0.77 -0.5
5,130,149 - Echvi_4284 0.79 +3.2
5,130,157 + Echvi_4284 0.79 +1.5
5,130,182 - Echvi_4284 0.81 -0.5
5,130,182 - Echvi_4284 0.81 +2.3
5,130,187 + Echvi_4284 0.81 -1.3
5,130,187 + Echvi_4284 0.81 -0.4
5,130,222 + Echvi_4284 0.84 -0.5
5,130,222 + Echvi_4284 0.84 -1.0
5,130,225 + Echvi_4284 0.84 +0.0
5,130,226 - Echvi_4284 0.84 +1.8
5,130,232 - Echvi_4284 0.85 +0.9
5,130,253 + Echvi_4284 0.86 -1.0
5,130,292 - Echvi_4284 0.89 -1.6
5,130,316 - +1.1
5,130,323 + +1.3
5,130,324 - +1.1
5,130,349 - +0.9
5,130,367 - +1.2
5,130,368 + -2.3
5,130,368 + -2.5
5,130,368 + -0.5
5,130,369 - -0.2
5,130,409 + -1.3
5,130,449 - -1.3
5,130,451 - -1.9
5,130,451 - -0.9
5,130,456 - +0.5
5,130,459 + -1.0
5,130,460 - -0.8
5,130,531 - +1.4
5,130,536 + +1.6
5,130,536 + +0.8
5,130,536 + +1.6
5,130,536 + -1.6
5,130,536 + -2.7
5,130,573 + -2.7
5,130,577 + +0.8
5,130,577 + -1.5
5,130,578 - +0.9
5,130,583 + -1.9
5,130,587 - -0.7
5,130,594 - -1.1
5,130,596 - +1.1
5,130,608 - -0.0
5,130,623 + -1.0
5,130,650 - +1.0
5,130,666 - -1.3
5,130,728 + +1.0
5,130,729 - +1.0
5,130,735 - -1.3
5,130,779 + Echvi_4285 0.10 +0.3
5,130,788 + Echvi_4285 0.10 +1.1
5,130,789 - Echvi_4285 0.10 -1.3
5,130,824 + Echvi_4285 0.11 +0.1
5,130,828 - Echvi_4285 0.12 -3.8
5,130,860 + Echvi_4285 0.13 -1.7
5,130,861 - Echvi_4285 0.13 -0.7
5,130,878 - Echvi_4285 0.13 +1.7

Or see this region's nucleotide sequence