Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4081

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4080 and Echvi_4081 are separated by 20 nucleotidesEchvi_4081 and Echvi_4082 overlap by 4 nucleotidesEchvi_4082 and Echvi_4083 are separated by 12 nucleotides Echvi_4080: Echvi_4080 - hypothetical protein, at 4,890,844 to 4,891,941 _4080 Echvi_4081: Echvi_4081 - Malic enzyme, at 4,891,962 to 4,894,235 _4081 Echvi_4082: Echvi_4082 - Holliday junction DNA helicase, RuvA subunit, at 4,894,232 to 4,894,831 _4082 Echvi_4083: Echvi_4083 - hypothetical protein, at 4,894,844 to 4,901,980 _4083 Position (kb) 4891 4892 4893 4894 4895Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4891.732 kb on + strand, within Echvi_4080at 4891.948 kb on + strandat 4891.950 kb on + strandat 4891.950 kb on + strandat 4891.952 kb on + strandat 4892.225 kb on + strand, within Echvi_4081at 4892.580 kb on + strand, within Echvi_4081at 4893.729 kb on + strand, within Echvi_4081at 4894.075 kb on - strandat 4894.229 kb on + strandat 4894.229 kb on + strandat 4894.229 kb on + strandat 4894.229 kb on + strandat 4894.231 kb on + strandat 4894.231 kb on + strandat 4894.231 kb on + strandat 4894.231 kb on + strandat 4894.242 kb on - strandat 4894.282 kb on - strandat 4894.293 kb on + strand, within Echvi_4082at 4894.320 kb on + strand, within Echvi_4082at 4894.334 kb on + strand, within Echvi_4082at 4894.612 kb on + strand, within Echvi_4082at 4894.613 kb on - strand, within Echvi_4082at 4894.618 kb on + strand, within Echvi_4082at 4894.808 kb on - strandat 4894.818 kb on + strandat 4894.833 kb on + strandat 4894.837 kb on - strandat 4894.849 kb on + strandat 4894.850 kb on - strandat 4894.879 kb on + strandat 4894.879 kb on + strandat 4894.879 kb on + strandat 4894.909 kb on - strandat 4894.981 kb on + strandat 4895.037 kb on + strandat 4895.054 kb on - strandat 4895.109 kb on - strandat 4895.175 kb on - strandat 4895.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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4,891,732 + Echvi_4080 0.81 +0.4
4,891,948 + -3.3
4,891,950 + +2.6
4,891,950 + +1.0
4,891,952 + -2.3
4,892,225 + Echvi_4081 0.12 -1.4
4,892,580 + Echvi_4081 0.27 -1.1
4,893,729 + Echvi_4081 0.78 -1.9
4,894,075 - -1.1
4,894,229 + -0.6
4,894,229 + +0.4
4,894,229 + -1.5
4,894,229 + -3.2
4,894,231 + -1.4
4,894,231 + -0.0
4,894,231 + -2.6
4,894,231 + +1.0
4,894,242 - -0.8
4,894,282 - -2.1
4,894,293 + Echvi_4082 0.10 -1.0
4,894,320 + Echvi_4082 0.15 -0.1
4,894,334 + Echvi_4082 0.17 -1.8
4,894,612 + Echvi_4082 0.63 -1.1
4,894,613 - Echvi_4082 0.64 -0.8
4,894,618 + Echvi_4082 0.64 +0.6
4,894,808 - -3.9
4,894,818 + +3.6
4,894,833 + +2.4
4,894,837 - -2.0
4,894,849 + +2.4
4,894,850 - +3.4
4,894,879 + +3.3
4,894,879 + +2.9
4,894,879 + +3.8
4,894,909 - +1.1
4,894,981 + +2.9
4,895,037 + +2.7
4,895,054 - +3.3
4,895,109 - +4.0
4,895,175 - -1.6
4,895,175 - +2.9

Or see this region's nucleotide sequence