Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4078 and Echvi_4079 are separated by 15 nucleotides Echvi_4079 and Echvi_4080 are separated by 91 nucleotides
Echvi_4078: Echvi_4078 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit, at 4,887,915 to 4,889,342
_4078
Echvi_4079: Echvi_4079 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,889,358 to 4,890,752
_4079
Echvi_4080: Echvi_4080 - hypothetical protein, at 4,890,844 to 4,891,941
_4080
Position (kb) 4889
4890
4891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4889.323 kb on + strand at 4889.333 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.348 kb on + strand at 4889.350 kb on + strand at 4889.398 kb on + strand at 4889.481 kb on + strand at 4889.588 kb on + strand, within Echvi_4079 at 4889.588 kb on + strand, within Echvi_4079 at 4889.600 kb on + strand, within Echvi_4079 at 4889.619 kb on + strand, within Echvi_4079 at 4889.652 kb on + strand, within Echvi_4079 at 4889.709 kb on + strand, within Echvi_4079 at 4889.735 kb on + strand, within Echvi_4079 at 4889.931 kb on + strand, within Echvi_4079 at 4889.933 kb on + strand, within Echvi_4079 at 4890.003 kb on + strand, within Echvi_4079 at 4890.003 kb on + strand, within Echvi_4079 at 4890.033 kb on + strand, within Echvi_4079 at 4890.035 kb on + strand, within Echvi_4079 at 4890.035 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.060 kb on + strand, within Echvi_4079 at 4890.072 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.158 kb on + strand, within Echvi_4079 at 4890.173 kb on + strand, within Echvi_4079 at 4890.252 kb on + strand, within Echvi_4079 at 4890.252 kb on + strand, within Echvi_4079 at 4890.402 kb on + strand, within Echvi_4079 at 4890.402 kb on + strand, within Echvi_4079 at 4890.403 kb on - strand, within Echvi_4079 at 4890.404 kb on + strand, within Echvi_4079 at 4890.409 kb on + strand, within Echvi_4079 at 4890.410 kb on - strand, within Echvi_4079 at 4890.447 kb on + strand, within Echvi_4079 at 4890.447 kb on + strand, within Echvi_4079 at 4890.497 kb on + strand, within Echvi_4079 at 4890.618 kb on + strand at 4890.808 kb on + strand at 4890.808 kb on + strand at 4891.732 kb on + strand, within Echvi_4080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,889,323 + +3.4 4,889,333 + +2.1 4,889,348 + +0.5 4,889,348 + -1.0 4,889,348 + -1.0 4,889,348 + -2.9 4,889,350 + -1.5 4,889,398 + -0.2 4,889,481 + -1.8 4,889,588 + Echvi_4079 0.16 -0.8 4,889,588 + Echvi_4079 0.16 -2.5 4,889,600 + Echvi_4079 0.17 +0.8 4,889,619 + Echvi_4079 0.19 +1.3 4,889,652 + Echvi_4079 0.21 +2.4 4,889,709 + Echvi_4079 0.25 +0.8 4,889,735 + Echvi_4079 0.27 -1.0 4,889,931 + Echvi_4079 0.41 +0.4 4,889,933 + Echvi_4079 0.41 -0.1 4,890,003 + Echvi_4079 0.46 -0.0 4,890,003 + Echvi_4079 0.46 +0.1 4,890,033 + Echvi_4079 0.48 +0.6 4,890,035 + Echvi_4079 0.49 -0.6 4,890,035 + Echvi_4079 0.49 +3.6 4,890,060 + Echvi_4079 0.50 -1.8 4,890,060 + Echvi_4079 0.50 -0.8 4,890,060 + Echvi_4079 0.50 +2.7 4,890,060 + Echvi_4079 0.50 -2.5 4,890,060 + Echvi_4079 0.50 +1.2 4,890,072 + Echvi_4079 0.51 +1.6 4,890,158 + Echvi_4079 0.57 +1.7 4,890,158 + Echvi_4079 0.57 -1.4 4,890,158 + Echvi_4079 0.57 +0.4 4,890,173 + Echvi_4079 0.58 +0.6 4,890,252 + Echvi_4079 0.64 +1.3 4,890,252 + Echvi_4079 0.64 +5.0 4,890,402 + Echvi_4079 0.75 +1.8 4,890,402 + Echvi_4079 0.75 +4.0 4,890,403 - Echvi_4079 0.75 -1.5 4,890,404 + Echvi_4079 0.75 +2.4 4,890,409 + Echvi_4079 0.75 +2.1 4,890,410 - Echvi_4079 0.75 -1.4 4,890,447 + Echvi_4079 0.78 -1.9 4,890,447 + Echvi_4079 0.78 -0.4 4,890,497 + Echvi_4079 0.82 +2.7 4,890,618 + +2.3 4,890,808 + +2.4 4,890,808 + +2.0 4,891,732 + Echvi_4080 0.81 +0.4
Or see this region's nucleotide sequence