Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3970

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3969 and Echvi_3970 are separated by 430 nucleotidesEchvi_3970 and Echvi_3971 are separated by 83 nucleotidesEchvi_3971 and Echvi_3972 are separated by 12 nucleotides Echvi_3969: Echvi_3969 - Domain of Unknown Function (DUF1080)., at 4,757,423 to 4,758,202 _3969 Echvi_3970: Echvi_3970 - hypothetical protein, at 4,758,633 to 4,759,163 _3970 Echvi_3971: Echvi_3971 - Predicted transcriptional regulator, at 4,759,247 to 4,760,014 _3971 Echvi_3972: Echvi_3972 - hypothetical protein, at 4,760,027 to 4,760,284 _3972 Position (kb) 4758 4759 4760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 4757.641 kb on + strand, within Echvi_3969at 4757.687 kb on - strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.688 kb on + strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.689 kb on - strand, within Echvi_3969at 4757.726 kb on + strand, within Echvi_3969at 4757.764 kb on - strand, within Echvi_3969at 4757.776 kb on + strand, within Echvi_3969at 4757.779 kb on + strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.780 kb on - strand, within Echvi_3969at 4757.781 kb on + strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.782 kb on - strand, within Echvi_3969at 4757.798 kb on - strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.812 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.817 kb on + strand, within Echvi_3969at 4757.818 kb on - strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.822 kb on + strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.823 kb on - strand, within Echvi_3969at 4757.824 kb on + strand, within Echvi_3969at 4757.825 kb on - strand, within Echvi_3969at 4757.846 kb on + strand, within Echvi_3969at 4757.938 kb on + strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.939 kb on - strand, within Echvi_3969at 4757.944 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.988 kb on + strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4757.989 kb on - strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.058 kb on + strand, within Echvi_3969at 4758.064 kb on + strand, within Echvi_3969at 4758.065 kb on - strand, within Echvi_3969at 4758.220 kb on - strandat 4758.225 kb on - strandat 4758.225 kb on - strandat 4758.243 kb on + strandat 4758.253 kb on + strandat 4758.274 kb on + strandat 4758.413 kb on + strandat 4758.443 kb on + strandat 4758.512 kb on + strandat 4758.536 kb on + strandat 4758.546 kb on + strandat 4758.549 kb on + strandat 4758.550 kb on - strandat 4758.653 kb on - strandat 4758.661 kb on + strandat 4758.661 kb on + strandat 4758.661 kb on + strandat 4758.662 kb on - strandat 4758.754 kb on + strand, within Echvi_3970at 4758.867 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.894 kb on + strand, within Echvi_3970at 4758.895 kb on - strand, within Echvi_3970at 4758.897 kb on - strand, within Echvi_3970at 4758.897 kb on - strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.905 kb on + strand, within Echvi_3970at 4758.906 kb on - strand, within Echvi_3970at 4758.906 kb on - strand, within Echvi_3970at 4758.912 kb on - strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.927 kb on + strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.928 kb on - strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.929 kb on + strand, within Echvi_3970at 4758.930 kb on - strand, within Echvi_3970at 4758.957 kb on - strand, within Echvi_3970at 4758.958 kb on + strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.959 kb on - strand, within Echvi_3970at 4758.967 kb on + strand, within Echvi_3970at 4758.986 kb on - strand, within Echvi_3970at 4758.986 kb on - strand, within Echvi_3970at 4759.068 kb on - strand, within Echvi_3970at 4759.086 kb on - strand, within Echvi_3970at 4759.262 kb on - strandat 4759.262 kb on - strandat 4759.270 kb on - strandat 4759.324 kb on + strand, within Echvi_3971at 4759.325 kb on - strand, within Echvi_3971at 4759.383 kb on - strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.461 kb on + strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.466 kb on - strand, within Echvi_3971at 4759.466 kb on - strand, within Echvi_3971at 4759.477 kb on + strand, within Echvi_3971at 4759.479 kb on + strand, within Echvi_3971at 4759.480 kb on - strand, within Echvi_3971at 4759.480 kb on - strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.487 kb on - strand, within Echvi_3971at 4759.501 kb on + strand, within Echvi_3971at 4759.504 kb on + strand, within Echvi_3971at 4759.505 kb on - strand, within Echvi_3971at 4759.512 kb on + strand, within Echvi_3971at 4759.513 kb on - strand, within Echvi_3971at 4759.549 kb on + strand, within Echvi_3971at 4759.550 kb on - strand, within Echvi_3971at 4759.550 kb on - strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.620 kb on + strand, within Echvi_3971at 4759.620 kb on + strand, within Echvi_3971at 4759.621 kb on - strand, within Echvi_3971at 4759.621 kb on - strand, within Echvi_3971at 4759.637 kb on + strand, within Echvi_3971at 4759.674 kb on + strand, within Echvi_3971at 4759.866 kb on - strand, within Echvi_3971at 4759.868 kb on + strand, within Echvi_3971at 4759.868 kb on + strand, within Echvi_3971at 4759.889 kb on - strand, within Echvi_3971at 4759.911 kb on + strand, within Echvi_3971at 4759.941 kb on - strandat 4759.953 kb on - strandat 4759.953 kb on - strandat 4759.985 kb on + strandat 4759.986 kb on - strandat 4759.986 kb on - strandat 4759.989 kb on + strandat 4760.007 kb on - strandat 4760.029 kb on - strandat 4760.035 kb on + strandat 4760.035 kb on + strandat 4760.036 kb on - strandat 4760.036 kb on - strandat 4760.036 kb on - strandat 4760.037 kb on + strandat 4760.037 kb on + strandat 4760.090 kb on + strand, within Echvi_3972

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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4,757,641 + Echvi_3969 0.28 +1.5
4,757,687 - Echvi_3969 0.34 -1.6
4,757,688 + Echvi_3969 0.34 -0.8
4,757,688 + Echvi_3969 0.34 -2.6
4,757,688 + Echvi_3969 0.34 -2.4
4,757,688 + Echvi_3969 0.34 +0.6
4,757,688 + Echvi_3969 0.34 +0.5
4,757,688 + Echvi_3969 0.34 +0.8
4,757,688 + Echvi_3969 0.34 +0.5
4,757,688 + Echvi_3969 0.34 +0.4
4,757,688 + Echvi_3969 0.34 +0.5
4,757,688 + Echvi_3969 0.34 -0.9
4,757,688 + Echvi_3969 0.34 -1.3
4,757,688 + Echvi_3969 0.34 -2.3
4,757,688 + Echvi_3969 0.34 -3.4
4,757,688 + Echvi_3969 0.34 -3.9
4,757,688 + Echvi_3969 0.34 -2.0
4,757,688 + Echvi_3969 0.34 -3.7
4,757,689 - Echvi_3969 0.34 +1.5
4,757,689 - Echvi_3969 0.34 -1.9
4,757,689 - Echvi_3969 0.34 +1.3
4,757,689 - Echvi_3969 0.34 -0.2
4,757,689 - Echvi_3969 0.34 +1.2
4,757,689 - Echvi_3969 0.34 +0.1
4,757,689 - Echvi_3969 0.34 -1.7
4,757,726 + Echvi_3969 0.39 -0.4
4,757,764 - Echvi_3969 0.44 +0.6
4,757,776 + Echvi_3969 0.45 -2.5
4,757,779 + Echvi_3969 0.46 -2.7
4,757,780 - Echvi_3969 0.46 -1.2
4,757,780 - Echvi_3969 0.46 -2.0
4,757,780 - Echvi_3969 0.46 -0.3
4,757,780 - Echvi_3969 0.46 +0.2
4,757,781 + Echvi_3969 0.46 +1.0
4,757,782 - Echvi_3969 0.46 -0.0
4,757,782 - Echvi_3969 0.46 -0.2
4,757,782 - Echvi_3969 0.46 +0.4
4,757,798 - Echvi_3969 0.48 +1.3
4,757,812 + Echvi_3969 0.50 +1.6
4,757,812 + Echvi_3969 0.50 +1.5
4,757,817 + Echvi_3969 0.51 -0.7
4,757,817 + Echvi_3969 0.51 +1.8
4,757,817 + Echvi_3969 0.51 +0.6
4,757,818 - Echvi_3969 0.51 +1.4
4,757,822 + Echvi_3969 0.51 +2.1
4,757,822 + Echvi_3969 0.51 -1.5
4,757,823 - Echvi_3969 0.51 -2.1
4,757,823 - Echvi_3969 0.51 -3.0
4,757,824 + Echvi_3969 0.51 -2.2
4,757,825 - Echvi_3969 0.52 +0.9
4,757,846 + Echvi_3969 0.54 +1.9
4,757,938 + Echvi_3969 0.66 -1.8
4,757,939 - Echvi_3969 0.66 -0.7
4,757,939 - Echvi_3969 0.66 -1.6
4,757,944 + Echvi_3969 0.67 +0.1
4,757,988 + Echvi_3969 0.72 +1.2
4,757,988 + Echvi_3969 0.72 -0.4
4,757,988 + Echvi_3969 0.72 +1.6
4,757,988 + Echvi_3969 0.72 -1.4
4,757,989 - Echvi_3969 0.73 -0.2
4,757,989 - Echvi_3969 0.73 -0.3
4,758,058 + Echvi_3969 0.81 +1.2
4,758,058 + Echvi_3969 0.81 +2.2
4,758,064 + Echvi_3969 0.82 +2.1
4,758,065 - Echvi_3969 0.82 +1.7
4,758,220 - +0.1
4,758,225 - +0.1
4,758,225 - -3.1
4,758,243 + +0.5
4,758,253 + -2.1
4,758,274 + -0.5
4,758,413 + +2.1
4,758,443 + +0.5
4,758,512 + -0.1
4,758,536 + -2.1
4,758,546 + +1.1
4,758,549 + -2.9
4,758,550 - -0.5
4,758,653 - +2.0
4,758,661 + -0.9
4,758,661 + -1.2
4,758,661 + +0.7
4,758,662 - -0.9
4,758,754 + Echvi_3970 0.23 +0.0
4,758,867 + Echvi_3970 0.44 -1.0
4,758,894 + Echvi_3970 0.49 +1.6
4,758,894 + Echvi_3970 0.49 -0.9
4,758,894 + Echvi_3970 0.49 +1.7
4,758,895 - Echvi_3970 0.49 +1.2
4,758,897 - Echvi_3970 0.50 +0.1
4,758,897 - Echvi_3970 0.50 -0.5
4,758,905 + Echvi_3970 0.51 -0.2
4,758,905 + Echvi_3970 0.51 +0.3
4,758,905 + Echvi_3970 0.51 -2.7
4,758,905 + Echvi_3970 0.51 +2.1
4,758,906 - Echvi_3970 0.51 -1.8
4,758,906 - Echvi_3970 0.51 -1.6
4,758,912 - Echvi_3970 0.53 +2.3
4,758,927 + Echvi_3970 0.55 +0.5
4,758,927 + Echvi_3970 0.55 +0.3
4,758,927 + Echvi_3970 0.55 +6.0
4,758,927 + Echvi_3970 0.55 -1.8
4,758,927 + Echvi_3970 0.55 -0.7
4,758,927 + Echvi_3970 0.55 +3.1
4,758,928 - Echvi_3970 0.56 +3.9
4,758,928 - Echvi_3970 0.56 +1.3
4,758,928 - Echvi_3970 0.56 -2.5
4,758,929 + Echvi_3970 0.56 +0.4
4,758,929 + Echvi_3970 0.56 -1.2
4,758,929 + Echvi_3970 0.56 -0.2
4,758,930 - Echvi_3970 0.56 +3.0
4,758,957 - Echvi_3970 0.61 -1.0
4,758,958 + Echvi_3970 0.61 -2.7
4,758,959 - Echvi_3970 0.61 +0.9
4,758,959 - Echvi_3970 0.61 +2.4
4,758,959 - Echvi_3970 0.61 +1.4
4,758,959 - Echvi_3970 0.61 -1.8
4,758,967 + Echvi_3970 0.63 +0.7
4,758,986 - Echvi_3970 0.66 +0.4
4,758,986 - Echvi_3970 0.66 -3.9
4,759,068 - Echvi_3970 0.82 -2.3
4,759,086 - Echvi_3970 0.85 +1.8
4,759,262 - -2.7
4,759,262 - +1.1
4,759,270 - -0.5
4,759,324 + Echvi_3971 0.10 +1.1
4,759,325 - Echvi_3971 0.10 -3.5
4,759,383 - Echvi_3971 0.18 -1.8
4,759,411 + Echvi_3971 0.21 -2.5
4,759,411 + Echvi_3971 0.21 +0.5
4,759,411 + Echvi_3971 0.21 +1.3
4,759,413 + Echvi_3971 0.22 +1.3
4,759,413 + Echvi_3971 0.22 +0.9
4,759,413 + Echvi_3971 0.22 +0.3
4,759,413 + Echvi_3971 0.22 +1.0
4,759,413 + Echvi_3971 0.22 +0.0
4,759,413 + Echvi_3971 0.22 -1.1
4,759,413 + Echvi_3971 0.22 -0.5
4,759,413 + Echvi_3971 0.22 +2.2
4,759,413 + Echvi_3971 0.22 +0.1
4,759,413 - Echvi_3971 0.22 -0.3
4,759,414 - Echvi_3971 0.22 +0.8
4,759,414 - Echvi_3971 0.22 +0.3
4,759,414 - Echvi_3971 0.22 +0.6
4,759,414 - Echvi_3971 0.22 +0.8
4,759,414 - Echvi_3971 0.22 +0.3
4,759,414 - Echvi_3971 0.22 -2.4
4,759,414 - Echvi_3971 0.22 -1.4
4,759,461 + Echvi_3971 0.28 -1.7
4,759,462 - Echvi_3971 0.28 +0.4
4,759,462 - Echvi_3971 0.28 -1.7
4,759,462 - Echvi_3971 0.28 +1.5
4,759,462 - Echvi_3971 0.28 +0.1
4,759,462 - Echvi_3971 0.28 -0.6
4,759,466 - Echvi_3971 0.29 +1.6
4,759,466 - Echvi_3971 0.29 +2.4
4,759,477 + Echvi_3971 0.30 +1.7
4,759,479 + Echvi_3971 0.30 -1.9
4,759,480 - Echvi_3971 0.30 +0.8
4,759,480 - Echvi_3971 0.30 +2.8
4,759,486 + Echvi_3971 0.31 +0.1
4,759,486 + Echvi_3971 0.31 +1.4
4,759,486 + Echvi_3971 0.31 +2.1
4,759,486 + Echvi_3971 0.31 -0.4
4,759,487 - Echvi_3971 0.31 +1.1
4,759,501 + Echvi_3971 0.33 +0.6
4,759,504 + Echvi_3971 0.33 -0.8
4,759,505 - Echvi_3971 0.34 -2.2
4,759,512 + Echvi_3971 0.35 -0.7
4,759,513 - Echvi_3971 0.35 -1.3
4,759,549 + Echvi_3971 0.39 -1.2
4,759,550 - Echvi_3971 0.39 +0.1
4,759,550 - Echvi_3971 0.39 -1.8
4,759,551 + Echvi_3971 0.40 +3.8
4,759,551 + Echvi_3971 0.40 -0.6
4,759,551 + Echvi_3971 0.40 +0.2
4,759,551 + Echvi_3971 0.40 +0.3
4,759,551 + Echvi_3971 0.40 -1.7
4,759,551 + Echvi_3971 0.40 -1.5
4,759,552 - Echvi_3971 0.40 -1.5
4,759,552 - Echvi_3971 0.40 -1.8
4,759,552 - Echvi_3971 0.40 -2.4
4,759,552 - Echvi_3971 0.40 +2.2
4,759,591 + Echvi_3971 0.45 -0.2
4,759,591 + Echvi_3971 0.45 -3.6
4,759,591 + Echvi_3971 0.45 -0.2
4,759,591 + Echvi_3971 0.45 -0.5
4,759,592 - Echvi_3971 0.45 +0.5
4,759,592 - Echvi_3971 0.45 -2.4
4,759,592 - Echvi_3971 0.45 -2.7
4,759,620 + Echvi_3971 0.49 +0.8
4,759,620 + Echvi_3971 0.49 -2.3
4,759,621 - Echvi_3971 0.49 -0.9
4,759,621 - Echvi_3971 0.49 -0.7
4,759,637 + Echvi_3971 0.51 -0.3
4,759,674 + Echvi_3971 0.56 -1.7
4,759,866 - Echvi_3971 0.81 +1.2
4,759,868 + Echvi_3971 0.81 +2.3
4,759,868 + Echvi_3971 0.81 +1.6
4,759,889 - Echvi_3971 0.84 -3.5
4,759,911 + Echvi_3971 0.86 -0.9
4,759,941 - -0.1
4,759,953 - +0.3
4,759,953 - -0.4
4,759,985 + +0.0
4,759,986 - +0.6
4,759,986 - -1.8
4,759,989 + +0.1
4,760,007 - -0.2
4,760,029 - +0.4
4,760,035 + +0.3
4,760,035 + +0.2
4,760,036 - -3.0
4,760,036 - -3.6
4,760,036 - -0.5
4,760,037 + +2.0
4,760,037 + +2.0
4,760,090 + Echvi_3972 0.24 +2.0

Or see this region's nucleotide sequence