Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3621 and Echvi_3622 are separated by 55 nucleotides Echvi_3622 and Echvi_3623 are separated by 382 nucleotides Echvi_3623 and Echvi_3624 are separated by 18 nucleotides
Echvi_3621: Echvi_3621 - hypothetical protein, at 4,301,088 to 4,301,429
_3621
Echvi_3622: Echvi_3622 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,301,485 to 4,301,862
_3622
Echvi_3623: Echvi_3623 - Glycerophosphoryl diester phosphodiesterase, at 4,302,245 to 4,303,018
_3623
Echvi_3624: Echvi_3624 - Outer membrane protein/protective antigen OMA87, at 4,303,037 to 4,304,212
_3624
Position (kb) 4302
4303
4304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4301.342 kb on + strand, within Echvi_3621 at 4301.343 kb on - strand, within Echvi_3621 at 4301.343 kb on - strand, within Echvi_3621 at 4301.343 kb on - strand, within Echvi_3621 at 4301.380 kb on + strand, within Echvi_3621 at 4301.381 kb on - strand, within Echvi_3621 at 4301.384 kb on - strand, within Echvi_3621 at 4301.391 kb on + strand, within Echvi_3621 at 4301.403 kb on + strand at 4301.403 kb on + strand at 4301.418 kb on + strand at 4301.444 kb on + strand at 4301.444 kb on + strand at 4301.444 kb on + strand at 4301.444 kb on + strand at 4301.445 kb on - strand at 4301.445 kb on - strand at 4301.445 kb on - strand at 4301.448 kb on + strand at 4301.448 kb on + strand at 4301.486 kb on + strand at 4301.486 kb on + strand at 4301.486 kb on + strand at 4301.486 kb on + strand at 4301.487 kb on - strand at 4301.487 kb on - strand at 4301.487 kb on - strand at 4301.531 kb on - strand, within Echvi_3622 at 4301.605 kb on + strand, within Echvi_3622 at 4301.615 kb on + strand, within Echvi_3622 at 4301.617 kb on + strand, within Echvi_3622 at 4301.617 kb on + strand, within Echvi_3622 at 4301.617 kb on + strand, within Echvi_3622 at 4301.617 kb on + strand, within Echvi_3622 at 4301.691 kb on - strand, within Echvi_3622 at 4301.719 kb on + strand, within Echvi_3622 at 4301.720 kb on - strand, within Echvi_3622 at 4301.720 kb on - strand, within Echvi_3622 at 4301.752 kb on - strand, within Echvi_3622 at 4301.761 kb on + strand, within Echvi_3622 at 4301.863 kb on + strand at 4301.911 kb on - strand at 4302.054 kb on + strand at 4302.148 kb on - strand at 4302.154 kb on - strand at 4302.160 kb on - strand at 4302.188 kb on - strand at 4302.188 kb on - strand at 4302.201 kb on - strand at 4302.286 kb on + strand at 4302.287 kb on - strand at 4302.288 kb on + strand at 4302.288 kb on + strand at 4302.288 kb on + strand at 4302.288 kb on + strand at 4302.289 kb on - strand at 4302.322 kb on + strand at 4302.358 kb on + strand, within Echvi_3623 at 4302.359 kb on - strand, within Echvi_3623 at 4302.453 kb on + strand, within Echvi_3623 at 4302.454 kb on - strand at 4302.454 kb on - strand, within Echvi_3623 at 4302.454 kb on - strand, within Echvi_3623 at 4302.454 kb on - strand, within Echvi_3623 at 4302.454 kb on - strand, within Echvi_3623 at 4302.505 kb on + strand, within Echvi_3623 at 4302.509 kb on + strand, within Echvi_3623 at 4302.509 kb on + strand, within Echvi_3623 at 4302.509 kb on + strand, within Echvi_3623 at 4302.510 kb on - strand, within Echvi_3623 at 4302.556 kb on + strand, within Echvi_3623 at 4302.556 kb on + strand, within Echvi_3623 at 4302.634 kb on - strand, within Echvi_3623 at 4302.634 kb on - strand, within Echvi_3623 at 4302.655 kb on + strand, within Echvi_3623 at 4302.682 kb on - strand, within Echvi_3623 at 4302.690 kb on + strand, within Echvi_3623 at 4302.690 kb on + strand, within Echvi_3623 at 4302.713 kb on + strand, within Echvi_3623 at 4302.714 kb on - strand, within Echvi_3623 at 4302.724 kb on + strand, within Echvi_3623 at 4302.729 kb on - strand, within Echvi_3623 at 4302.779 kb on + strand, within Echvi_3623 at 4302.793 kb on + strand, within Echvi_3623 at 4302.793 kb on + strand, within Echvi_3623 at 4302.794 kb on - strand, within Echvi_3623 at 4302.839 kb on + strand, within Echvi_3623 at 4302.841 kb on + strand, within Echvi_3623 at 4302.842 kb on - strand, within Echvi_3623 at 4302.844 kb on + strand, within Echvi_3623 at 4302.895 kb on - strand, within Echvi_3623 at 4302.906 kb on + strand, within Echvi_3623 at 4302.906 kb on + strand, within Echvi_3623 at 4302.906 kb on + strand, within Echvi_3623 at 4302.925 kb on + strand, within Echvi_3623 at 4302.926 kb on - strand, within Echvi_3623 at 4303.024 kb on - strand at 4303.053 kb on - strand at 4303.054 kb on + strand at 4303.056 kb on + strand at 4303.056 kb on + strand at 4303.056 kb on + strand at 4303.056 kb on + strand at 4303.057 kb on - strand at 4303.057 kb on - strand at 4303.057 kb on - strand at 4303.057 kb on - strand at 4303.057 kb on - strand at 4303.057 kb on - strand at 4303.062 kb on + strand at 4303.107 kb on + strand at 4303.107 kb on + strand at 4303.107 kb on + strand at 4303.107 kb on + strand at 4303.108 kb on - strand at 4303.108 kb on - strand at 4303.108 kb on - strand at 4303.130 kb on + strand at 4303.130 kb on + strand at 4303.297 kb on + strand, within Echvi_3624 at 4303.297 kb on + strand, within Echvi_3624 at 4303.297 kb on + strand, within Echvi_3624 at 4303.298 kb on - strand, within Echvi_3624 at 4303.298 kb on - strand, within Echvi_3624 at 4303.317 kb on + strand, within Echvi_3624 at 4303.317 kb on + strand, within Echvi_3624 at 4303.317 kb on + strand, within Echvi_3624 at 4303.317 kb on + strand, within Echvi_3624 at 4303.317 kb on + strand, within Echvi_3624 at 4303.318 kb on - strand, within Echvi_3624 at 4303.318 kb on - strand, within Echvi_3624 at 4303.320 kb on + strand, within Echvi_3624 at 4303.320 kb on + strand, within Echvi_3624 at 4303.320 kb on + strand, within Echvi_3624 at 4303.321 kb on - strand, within Echvi_3624 at 4303.323 kb on + strand, within Echvi_3624 at 4303.323 kb on + strand, within Echvi_3624 at 4303.324 kb on - strand, within Echvi_3624 at 4303.337 kb on - strand, within Echvi_3624 at 4303.366 kb on + strand, within Echvi_3624 at 4303.400 kb on + strand, within Echvi_3624 at 4303.401 kb on - strand, within Echvi_3624 at 4303.426 kb on + strand, within Echvi_3624 at 4303.426 kb on + strand, within Echvi_3624 at 4303.426 kb on + strand, within Echvi_3624 at 4303.426 kb on + strand, within Echvi_3624 at 4303.427 kb on - strand, within Echvi_3624 at 4303.431 kb on - strand, within Echvi_3624 at 4303.460 kb on - strand, within Echvi_3624 at 4303.476 kb on + strand, within Echvi_3624 at 4303.477 kb on - strand, within Echvi_3624 at 4303.477 kb on - strand, within Echvi_3624 at 4303.481 kb on - strand, within Echvi_3624 at 4303.500 kb on + strand, within Echvi_3624 at 4303.500 kb on + strand, within Echvi_3624 at 4303.501 kb on - strand, within Echvi_3624 at 4303.507 kb on + strand, within Echvi_3624 at 4303.509 kb on + strand, within Echvi_3624 at 4303.509 kb on + strand, within Echvi_3624 at 4303.509 kb on + strand, within Echvi_3624 at 4303.510 kb on - strand, within Echvi_3624 at 4303.547 kb on + strand, within Echvi_3624 at 4303.547 kb on + strand, within Echvi_3624 at 4303.548 kb on - strand, within Echvi_3624 at 4303.552 kb on + strand, within Echvi_3624 at 4303.552 kb on + strand, within Echvi_3624 at 4303.552 kb on + strand, within Echvi_3624 at 4303.552 kb on + strand, within Echvi_3624 at 4303.553 kb on - strand, within Echvi_3624 at 4303.553 kb on - strand, within Echvi_3624 at 4303.553 kb on - strand, within Echvi_3624 at 4303.553 kb on - strand, within Echvi_3624 at 4303.558 kb on + strand, within Echvi_3624 at 4303.559 kb on - strand, within Echvi_3624 at 4303.559 kb on - strand, within Echvi_3624 at 4303.559 kb on - strand, within Echvi_3624 at 4303.559 kb on - strand, within Echvi_3624 at 4303.559 kb on - strand, within Echvi_3624 at 4303.597 kb on + strand, within Echvi_3624 at 4303.598 kb on - strand, within Echvi_3624 at 4303.621 kb on - strand, within Echvi_3624 at 4303.699 kb on - strand, within Echvi_3624 at 4303.742 kb on + strand, within Echvi_3624 at 4303.743 kb on - strand, within Echvi_3624 at 4303.757 kb on + strand, within Echvi_3624 at 4303.758 kb on - strand, within Echvi_3624 at 4303.803 kb on + strand, within Echvi_3624 at 4303.859 kb on - strand, within Echvi_3624 at 4303.866 kb on + strand, within Echvi_3624 at 4303.965 kb on + strand, within Echvi_3624 at 4303.974 kb on + strand, within Echvi_3624 at 4303.974 kb on + strand, within Echvi_3624 at 4303.974 kb on + strand, within Echvi_3624 at 4303.974 kb on + strand, within Echvi_3624 at 4303.974 kb on + strand, within Echvi_3624 at 4303.975 kb on - strand, within Echvi_3624 at 4303.975 kb on - strand, within Echvi_3624 at 4303.976 kb on + strand, within Echvi_3624 at 4303.976 kb on + strand, within Echvi_3624 at 4303.976 kb on + strand, within Echvi_3624 at 4303.976 kb on + strand, within Echvi_3624 at 4303.977 kb on - strand, within Echvi_3624 at 4303.977 kb on - strand, within Echvi_3624 at 4303.977 kb on - strand, within Echvi_3624 at 4303.977 kb on - strand at 4303.977 kb on - strand, within Echvi_3624 at 4303.977 kb on - strand, within Echvi_3624 at 4303.977 kb on - strand, within Echvi_3624
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,301,342 + Echvi_3621 0.74 -0.6 4,301,343 - Echvi_3621 0.75 +2.3 4,301,343 - Echvi_3621 0.75 -2.4 4,301,343 - Echvi_3621 0.75 +1.1 4,301,380 + Echvi_3621 0.85 +2.4 4,301,381 - Echvi_3621 0.86 -1.9 4,301,384 - Echvi_3621 0.87 -1.4 4,301,391 + Echvi_3621 0.89 +1.4 4,301,403 + -0.7 4,301,403 + +0.0 4,301,418 + -1.1 4,301,444 + +1.2 4,301,444 + -2.8 4,301,444 + -1.1 4,301,444 + +1.8 4,301,445 - +2.7 4,301,445 - -3.0 4,301,445 - +0.2 4,301,448 + +2.0 4,301,448 + -0.3 4,301,486 + +1.2 4,301,486 + -0.1 4,301,486 + -1.9 4,301,486 + +2.4 4,301,487 - +0.9 4,301,487 - +2.3 4,301,487 - +2.8 4,301,531 - Echvi_3622 0.12 +0.0 4,301,605 + Echvi_3622 0.32 +1.0 4,301,615 + Echvi_3622 0.34 +0.2 4,301,617 + Echvi_3622 0.35 +1.4 4,301,617 + Echvi_3622 0.35 -1.8 4,301,617 + Echvi_3622 0.35 +0.6 4,301,617 + Echvi_3622 0.35 +0.0 4,301,691 - Echvi_3622 0.54 +1.0 4,301,719 + Echvi_3622 0.62 -1.7 4,301,720 - Echvi_3622 0.62 +1.0 4,301,720 - Echvi_3622 0.62 +1.7 4,301,752 - Echvi_3622 0.71 -1.0 4,301,761 + Echvi_3622 0.73 -0.8 4,301,863 + -0.5 4,301,911 - -3.6 4,302,054 + -2.4 4,302,148 - -0.5 4,302,154 - +1.5 4,302,160 - -0.0 4,302,188 - +0.1 4,302,188 - -0.5 4,302,201 - -1.9 4,302,286 + +1.2 4,302,287 - -1.9 4,302,288 + -0.2 4,302,288 + -0.3 4,302,288 + -2.1 4,302,288 + +0.1 4,302,289 - -1.3 4,302,322 + +3.8 4,302,358 + Echvi_3623 0.15 -0.3 4,302,359 - Echvi_3623 0.15 -0.8 4,302,453 + Echvi_3623 0.27 +0.0 4,302,454 - +2.0 4,302,454 - Echvi_3623 0.27 -1.4 4,302,454 - Echvi_3623 0.27 +0.4 4,302,454 - Echvi_3623 0.27 -1.3 4,302,454 - Echvi_3623 0.27 -0.8 4,302,505 + Echvi_3623 0.34 +0.9 4,302,509 + Echvi_3623 0.34 -0.3 4,302,509 + Echvi_3623 0.34 -2.1 4,302,509 + Echvi_3623 0.34 -2.4 4,302,510 - Echvi_3623 0.34 +1.0 4,302,556 + Echvi_3623 0.40 +1.3 4,302,556 + Echvi_3623 0.40 +0.8 4,302,634 - Echvi_3623 0.50 +1.0 4,302,634 - Echvi_3623 0.50 -1.4 4,302,655 + Echvi_3623 0.53 +1.2 4,302,682 - Echvi_3623 0.56 +2.4 4,302,690 + Echvi_3623 0.57 -1.7 4,302,690 + Echvi_3623 0.57 -2.3 4,302,713 + Echvi_3623 0.60 +0.6 4,302,714 - Echvi_3623 0.61 -1.5 4,302,724 + Echvi_3623 0.62 +3.1 4,302,729 - Echvi_3623 0.63 -1.7 4,302,779 + Echvi_3623 0.69 +0.4 4,302,793 + Echvi_3623 0.71 -2.1 4,302,793 + Echvi_3623 0.71 -1.3 4,302,794 - Echvi_3623 0.71 +1.6 4,302,839 + Echvi_3623 0.77 -0.8 4,302,841 + Echvi_3623 0.77 +1.1 4,302,842 - Echvi_3623 0.77 +2.2 4,302,844 + Echvi_3623 0.77 +4.5 4,302,895 - Echvi_3623 0.84 +1.6 4,302,906 + Echvi_3623 0.85 -0.5 4,302,906 + Echvi_3623 0.85 -0.3 4,302,906 + Echvi_3623 0.85 -2.2 4,302,925 + Echvi_3623 0.88 -0.5 4,302,926 - Echvi_3623 0.88 -0.7 4,303,024 - +0.6 4,303,053 - +1.3 4,303,054 + +1.8 4,303,056 + -1.8 4,303,056 + +0.5 4,303,056 + +1.4 4,303,056 + -1.1 4,303,057 - +1.7 4,303,057 - -2.8 4,303,057 - +0.9 4,303,057 - -0.8 4,303,057 - +0.4 4,303,057 - -1.8 4,303,062 + -0.8 4,303,107 + -2.1 4,303,107 + +2.2 4,303,107 + -2.8 4,303,107 + -1.0 4,303,108 - +2.4 4,303,108 - +0.8 4,303,108 - -0.3 4,303,130 + +0.2 4,303,130 + +1.2 4,303,297 + Echvi_3624 0.22 -2.5 4,303,297 + Echvi_3624 0.22 +0.7 4,303,297 + Echvi_3624 0.22 -3.2 4,303,298 - Echvi_3624 0.22 -0.8 4,303,298 - Echvi_3624 0.22 +0.4 4,303,317 + Echvi_3624 0.24 -2.1 4,303,317 + Echvi_3624 0.24 -0.2 4,303,317 + Echvi_3624 0.24 +4.4 4,303,317 + Echvi_3624 0.24 -0.4 4,303,317 + Echvi_3624 0.24 +2.3 4,303,318 - Echvi_3624 0.24 +0.4 4,303,318 - Echvi_3624 0.24 +2.7 4,303,320 + Echvi_3624 0.24 +0.6 4,303,320 + Echvi_3624 0.24 +1.1 4,303,320 + Echvi_3624 0.24 +0.3 4,303,321 - Echvi_3624 0.24 +1.9 4,303,323 + Echvi_3624 0.24 -2.5 4,303,323 + Echvi_3624 0.24 -0.3 4,303,324 - Echvi_3624 0.24 +1.0 4,303,337 - Echvi_3624 0.26 +1.9 4,303,366 + Echvi_3624 0.28 -2.5 4,303,400 + Echvi_3624 0.31 +0.7 4,303,401 - Echvi_3624 0.31 +0.9 4,303,426 + Echvi_3624 0.33 -3.6 4,303,426 + Echvi_3624 0.33 +1.6 4,303,426 + Echvi_3624 0.33 +0.7 4,303,426 + Echvi_3624 0.33 +0.4 4,303,427 - Echvi_3624 0.33 -0.6 4,303,431 - Echvi_3624 0.34 -1.9 4,303,460 - Echvi_3624 0.36 -2.6 4,303,476 + Echvi_3624 0.37 -1.7 4,303,477 - Echvi_3624 0.37 +2.0 4,303,477 - Echvi_3624 0.37 -1.0 4,303,481 - Echvi_3624 0.38 +1.1 4,303,500 + Echvi_3624 0.39 +2.5 4,303,500 + Echvi_3624 0.39 +1.4 4,303,501 - Echvi_3624 0.39 -1.3 4,303,507 + Echvi_3624 0.40 -0.3 4,303,509 + Echvi_3624 0.40 +0.2 4,303,509 + Echvi_3624 0.40 -1.4 4,303,509 + Echvi_3624 0.40 -2.9 4,303,510 - Echvi_3624 0.40 +0.3 4,303,547 + Echvi_3624 0.43 -0.4 4,303,547 + Echvi_3624 0.43 -1.3 4,303,548 - Echvi_3624 0.43 +0.6 4,303,552 + Echvi_3624 0.44 +0.9 4,303,552 + Echvi_3624 0.44 -1.7 4,303,552 + Echvi_3624 0.44 -2.6 4,303,552 + Echvi_3624 0.44 +0.0 4,303,553 - Echvi_3624 0.44 +0.0 4,303,553 - Echvi_3624 0.44 +3.0 4,303,553 - Echvi_3624 0.44 -0.8 4,303,553 - Echvi_3624 0.44 +1.9 4,303,558 + Echvi_3624 0.44 -1.0 4,303,559 - Echvi_3624 0.44 +0.9 4,303,559 - Echvi_3624 0.44 -1.8 4,303,559 - Echvi_3624 0.44 -1.3 4,303,559 - Echvi_3624 0.44 -0.5 4,303,559 - Echvi_3624 0.44 -1.3 4,303,597 + Echvi_3624 0.48 -0.1 4,303,598 - Echvi_3624 0.48 -0.1 4,303,621 - Echvi_3624 0.50 -2.4 4,303,699 - Echvi_3624 0.56 -1.2 4,303,742 + Echvi_3624 0.60 +0.9 4,303,743 - Echvi_3624 0.60 -1.1 4,303,757 + Echvi_3624 0.61 +0.9 4,303,758 - Echvi_3624 0.61 -2.0 4,303,803 + Echvi_3624 0.65 -0.5 4,303,859 - Echvi_3624 0.70 -1.4 4,303,866 + Echvi_3624 0.70 +0.8 4,303,965 + Echvi_3624 0.79 +1.0 4,303,974 + Echvi_3624 0.80 -2.8 4,303,974 + Echvi_3624 0.80 -1.1 4,303,974 + Echvi_3624 0.80 -0.5 4,303,974 + Echvi_3624 0.80 +1.1 4,303,974 + Echvi_3624 0.80 -0.3 4,303,975 - Echvi_3624 0.80 -2.1 4,303,975 - Echvi_3624 0.80 -1.3 4,303,976 + Echvi_3624 0.80 -1.9 4,303,976 + Echvi_3624 0.80 -1.7 4,303,976 + Echvi_3624 0.80 -0.3 4,303,976 + Echvi_3624 0.80 -0.8 4,303,977 - Echvi_3624 0.80 -0.4 4,303,977 - Echvi_3624 0.80 +0.6 4,303,977 - Echvi_3624 0.80 +1.6 4,303,977 - +0.5 4,303,977 - Echvi_3624 0.80 -0.3 4,303,977 - Echvi_3624 0.80 -0.4 4,303,977 - Echvi_3624 0.80 -0.4
Or see this region's nucleotide sequence