Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3616 and Echvi_3617 are separated by 90 nucleotides Echvi_3617 and Echvi_3618 are separated by 37 nucleotides Echvi_3618 and Echvi_3619 are separated by 92 nucleotides
Echvi_3616: Echvi_3616 - Predicted N6-adenine-specific DNA methylase, at 4,291,407 to 4,292,564
_3616
Echvi_3617: Echvi_3617 - Domain of Unknown Function (DUF1080)., at 4,292,655 to 4,293,434
_3617
Echvi_3618: Echvi_3618 - hypothetical protein, at 4,293,472 to 4,295,046
_3618
Echvi_3619: Echvi_3619 - RND family efflux transporter, MFP subunit, at 4,295,139 to 4,296,290
_3619
Position (kb) 4293
4294
4295
4296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4292.472 kb on - strand at 4292.503 kb on + strand at 4292.503 kb on + strand at 4292.504 kb on - strand at 4292.504 kb on - strand at 4292.536 kb on - strand at 4292.604 kb on - strand at 4292.604 kb on - strand at 4292.630 kb on + strand at 4292.656 kb on + strand at 4292.657 kb on - strand at 4292.762 kb on + strand, within Echvi_3617 at 4292.762 kb on + strand, within Echvi_3617 at 4292.850 kb on + strand, within Echvi_3617 at 4292.851 kb on - strand, within Echvi_3617 at 4292.931 kb on - strand, within Echvi_3617 at 4292.931 kb on - strand, within Echvi_3617 at 4292.931 kb on - strand, within Echvi_3617 at 4292.931 kb on - strand, within Echvi_3617 at 4292.962 kb on + strand, within Echvi_3617 at 4292.962 kb on + strand, within Echvi_3617 at 4292.963 kb on - strand, within Echvi_3617 at 4292.993 kb on + strand, within Echvi_3617 at 4293.061 kb on + strand, within Echvi_3617 at 4293.061 kb on + strand, within Echvi_3617 at 4293.062 kb on - strand, within Echvi_3617 at 4293.062 kb on - strand, within Echvi_3617 at 4293.062 kb on - strand, within Echvi_3617 at 4293.062 kb on - strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.063 kb on + strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.064 kb on - strand, within Echvi_3617 at 4293.192 kb on - strand, within Echvi_3617 at 4293.291 kb on + strand, within Echvi_3617 at 4293.292 kb on - strand, within Echvi_3617 at 4293.316 kb on - strand, within Echvi_3617 at 4293.393 kb on + strand at 4293.396 kb on - strand at 4293.396 kb on - strand at 4293.396 kb on - strand at 4293.448 kb on + strand at 4293.455 kb on + strand at 4293.458 kb on + strand at 4293.469 kb on + strand at 4293.470 kb on - strand at 4293.470 kb on - strand at 4293.470 kb on - strand at 4293.475 kb on + strand at 4293.475 kb on + strand at 4293.601 kb on - strand at 4293.632 kb on - strand, within Echvi_3618 at 4293.632 kb on - strand, within Echvi_3618 at 4293.632 kb on - strand, within Echvi_3618 at 4293.648 kb on + strand, within Echvi_3618 at 4293.649 kb on - strand, within Echvi_3618 at 4293.683 kb on - strand, within Echvi_3618 at 4293.696 kb on + strand, within Echvi_3618 at 4293.696 kb on + strand, within Echvi_3618 at 4293.696 kb on + strand, within Echvi_3618 at 4293.696 kb on + strand, within Echvi_3618 at 4293.696 kb on + strand, within Echvi_3618 at 4293.714 kb on - strand, within Echvi_3618 at 4293.741 kb on + strand, within Echvi_3618 at 4293.741 kb on + strand, within Echvi_3618 at 4293.741 kb on + strand, within Echvi_3618 at 4293.742 kb on - strand, within Echvi_3618 at 4293.752 kb on + strand, within Echvi_3618 at 4293.753 kb on - strand, within Echvi_3618 at 4293.753 kb on - strand, within Echvi_3618 at 4293.753 kb on - strand, within Echvi_3618 at 4293.753 kb on - strand, within Echvi_3618 at 4293.753 kb on - strand, within Echvi_3618 at 4293.760 kb on + strand, within Echvi_3618 at 4293.797 kb on + strand, within Echvi_3618 at 4293.848 kb on + strand, within Echvi_3618 at 4293.848 kb on + strand, within Echvi_3618 at 4293.849 kb on - strand, within Echvi_3618 at 4293.850 kb on + strand at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.850 kb on + strand, within Echvi_3618 at 4293.851 kb on - strand, within Echvi_3618 at 4293.908 kb on + strand, within Echvi_3618 at 4293.914 kb on + strand, within Echvi_3618 at 4293.925 kb on + strand, within Echvi_3618 at 4294.004 kb on - strand, within Echvi_3618 at 4294.088 kb on + strand, within Echvi_3618 at 4294.108 kb on + strand, within Echvi_3618 at 4294.226 kb on + strand, within Echvi_3618 at 4294.226 kb on + strand, within Echvi_3618 at 4294.246 kb on + strand, within Echvi_3618 at 4294.247 kb on - strand, within Echvi_3618 at 4294.249 kb on + strand, within Echvi_3618 at 4294.249 kb on + strand, within Echvi_3618 at 4294.282 kb on + strand, within Echvi_3618 at 4294.283 kb on - strand, within Echvi_3618 at 4294.283 kb on - strand, within Echvi_3618 at 4294.285 kb on + strand, within Echvi_3618 at 4294.285 kb on + strand, within Echvi_3618 at 4294.286 kb on - strand, within Echvi_3618 at 4294.322 kb on - strand, within Echvi_3618 at 4294.326 kb on + strand, within Echvi_3618 at 4294.326 kb on + strand, within Echvi_3618 at 4294.429 kb on + strand, within Echvi_3618 at 4294.429 kb on + strand, within Echvi_3618 at 4294.429 kb on + strand, within Echvi_3618 at 4294.429 kb on + strand, within Echvi_3618 at 4294.430 kb on - strand, within Echvi_3618 at 4294.432 kb on - strand, within Echvi_3618 at 4294.433 kb on + strand, within Echvi_3618 at 4294.462 kb on - strand, within Echvi_3618 at 4294.462 kb on - strand, within Echvi_3618 at 4294.479 kb on + strand, within Echvi_3618 at 4294.498 kb on - strand, within Echvi_3618 at 4294.499 kb on + strand, within Echvi_3618 at 4294.499 kb on + strand, within Echvi_3618 at 4294.563 kb on + strand, within Echvi_3618 at 4294.617 kb on + strand, within Echvi_3618 at 4294.617 kb on + strand, within Echvi_3618 at 4294.618 kb on - strand, within Echvi_3618 at 4294.618 kb on - strand, within Echvi_3618 at 4294.668 kb on - strand, within Echvi_3618 at 4294.723 kb on + strand, within Echvi_3618 at 4294.723 kb on + strand, within Echvi_3618 at 4294.724 kb on - strand, within Echvi_3618 at 4294.724 kb on - strand at 4294.724 kb on - strand, within Echvi_3618 at 4294.731 kb on - strand, within Echvi_3618 at 4294.767 kb on + strand, within Echvi_3618 at 4294.767 kb on + strand, within Echvi_3618 at 4294.768 kb on - strand, within Echvi_3618 at 4294.768 kb on - strand, within Echvi_3618 at 4294.768 kb on - strand, within Echvi_3618 at 4294.793 kb on - strand, within Echvi_3618 at 4295.001 kb on + strand at 4295.001 kb on + strand at 4295.001 kb on + strand at 4295.001 kb on + strand at 4295.001 kb on + strand at 4295.002 kb on - strand at 4295.002 kb on - strand at 4295.002 kb on - strand at 4295.004 kb on + strand at 4295.004 kb on + strand at 4295.004 kb on + strand at 4295.005 kb on - strand at 4295.079 kb on - strand at 4295.093 kb on - strand at 4295.121 kb on + strand at 4295.186 kb on - strand at 4295.189 kb on - strand at 4295.196 kb on - strand at 4295.267 kb on + strand, within Echvi_3619 at 4295.268 kb on - strand, within Echvi_3619 at 4295.274 kb on + strand, within Echvi_3619 at 4295.274 kb on + strand, within Echvi_3619 at 4295.400 kb on + strand, within Echvi_3619 at 4295.401 kb on - strand, within Echvi_3619 at 4295.401 kb on - strand, within Echvi_3619 at 4295.401 kb on - strand, within Echvi_3619 at 4295.412 kb on + strand, within Echvi_3619 at 4295.416 kb on + strand, within Echvi_3619 at 4295.416 kb on + strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.417 kb on - strand, within Echvi_3619 at 4295.465 kb on + strand, within Echvi_3619 at 4295.466 kb on - strand, within Echvi_3619 at 4295.509 kb on + strand, within Echvi_3619 at 4295.509 kb on + strand, within Echvi_3619 at 4295.509 kb on + strand, within Echvi_3619 at 4295.510 kb on - strand, within Echvi_3619 at 4295.510 kb on - strand, within Echvi_3619 at 4295.548 kb on - strand, within Echvi_3619 at 4295.621 kb on + strand, within Echvi_3619 at 4295.665 kb on - strand, within Echvi_3619 at 4295.665 kb on - strand, within Echvi_3619 at 4295.668 kb on + strand, within Echvi_3619 at 4295.668 kb on + strand, within Echvi_3619 at 4295.697 kb on - strand, within Echvi_3619 at 4295.697 kb on - strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.699 kb on + strand, within Echvi_3619 at 4295.700 kb on - strand, within Echvi_3619 at 4295.700 kb on - strand, within Echvi_3619 at 4295.702 kb on - strand, within Echvi_3619 at 4295.779 kb on - strand, within Echvi_3619 at 4295.785 kb on - strand, within Echvi_3619 at 4295.818 kb on - strand, within Echvi_3619 at 4295.818 kb on - strand, within Echvi_3619 at 4295.878 kb on + strand, within Echvi_3619 at 4295.879 kb on - strand, within Echvi_3619 at 4296.028 kb on - strand, within Echvi_3619 at 4296.037 kb on - strand, within Echvi_3619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,292,472 - -3.5 4,292,503 + -2.2 4,292,503 + +1.5 4,292,504 - -1.6 4,292,504 - +2.1 4,292,536 - -1.6 4,292,604 - +1.7 4,292,604 - +1.2 4,292,630 + +0.7 4,292,656 + -0.6 4,292,657 - -2.1 4,292,762 + Echvi_3617 0.14 +1.0 4,292,762 + Echvi_3617 0.14 -2.1 4,292,850 + Echvi_3617 0.25 -1.4 4,292,851 - Echvi_3617 0.25 -0.3 4,292,931 - Echvi_3617 0.35 -0.8 4,292,931 - Echvi_3617 0.35 +0.7 4,292,931 - Echvi_3617 0.35 -0.4 4,292,931 - Echvi_3617 0.35 +0.2 4,292,962 + Echvi_3617 0.39 +3.8 4,292,962 + Echvi_3617 0.39 -0.8 4,292,963 - Echvi_3617 0.39 +1.7 4,292,993 + Echvi_3617 0.43 -2.1 4,293,061 + Echvi_3617 0.52 +0.4 4,293,061 + Echvi_3617 0.52 -0.3 4,293,062 - Echvi_3617 0.52 -1.4 4,293,062 - Echvi_3617 0.52 +2.0 4,293,062 - Echvi_3617 0.52 -0.3 4,293,062 - Echvi_3617 0.52 -0.8 4,293,063 + Echvi_3617 0.52 -0.5 4,293,063 + Echvi_3617 0.52 -1.6 4,293,063 + Echvi_3617 0.52 -1.3 4,293,063 + Echvi_3617 0.52 +0.3 4,293,063 + Echvi_3617 0.52 -1.1 4,293,063 + Echvi_3617 0.52 +2.1 4,293,064 - Echvi_3617 0.52 +3.3 4,293,064 - Echvi_3617 0.52 +0.0 4,293,064 - Echvi_3617 0.52 +0.4 4,293,064 - Echvi_3617 0.52 -1.6 4,293,064 - Echvi_3617 0.52 -3.1 4,293,064 - Echvi_3617 0.52 -2.3 4,293,192 - Echvi_3617 0.69 -0.9 4,293,291 + Echvi_3617 0.82 -0.6 4,293,292 - Echvi_3617 0.82 -4.1 4,293,316 - Echvi_3617 0.85 -0.8 4,293,393 + +2.0 4,293,396 - +1.3 4,293,396 - -1.0 4,293,396 - -1.7 4,293,448 + -0.4 4,293,455 + +1.3 4,293,458 + +1.2 4,293,469 + -1.8 4,293,470 - +0.4 4,293,470 - +1.0 4,293,470 - -2.6 4,293,475 + +1.1 4,293,475 + -1.3 4,293,601 - +0.6 4,293,632 - Echvi_3618 0.10 -1.4 4,293,632 - Echvi_3618 0.10 -2.2 4,293,632 - Echvi_3618 0.10 +1.9 4,293,648 + Echvi_3618 0.11 -2.2 4,293,649 - Echvi_3618 0.11 +0.7 4,293,683 - Echvi_3618 0.13 -2.0 4,293,696 + Echvi_3618 0.14 +0.9 4,293,696 + Echvi_3618 0.14 -1.9 4,293,696 + Echvi_3618 0.14 +0.5 4,293,696 + Echvi_3618 0.14 -0.8 4,293,696 + Echvi_3618 0.14 +1.2 4,293,714 - Echvi_3618 0.15 +0.4 4,293,741 + Echvi_3618 0.17 -2.6 4,293,741 + Echvi_3618 0.17 +1.8 4,293,741 + Echvi_3618 0.17 -1.1 4,293,742 - Echvi_3618 0.17 -1.4 4,293,752 + Echvi_3618 0.18 +1.0 4,293,753 - Echvi_3618 0.18 +0.6 4,293,753 - Echvi_3618 0.18 -0.7 4,293,753 - Echvi_3618 0.18 +1.0 4,293,753 - Echvi_3618 0.18 -2.5 4,293,753 - Echvi_3618 0.18 +0.4 4,293,760 + Echvi_3618 0.18 -2.1 4,293,797 + Echvi_3618 0.21 -2.6 4,293,848 + Echvi_3618 0.24 -0.5 4,293,848 + Echvi_3618 0.24 -0.5 4,293,849 - Echvi_3618 0.24 +0.3 4,293,850 + -0.3 4,293,850 + Echvi_3618 0.24 -1.0 4,293,850 + Echvi_3618 0.24 -2.0 4,293,850 + Echvi_3618 0.24 +0.4 4,293,850 + Echvi_3618 0.24 +0.0 4,293,850 + Echvi_3618 0.24 +0.7 4,293,850 + Echvi_3618 0.24 +1.2 4,293,850 + Echvi_3618 0.24 -0.6 4,293,851 - Echvi_3618 0.24 +2.9 4,293,908 + Echvi_3618 0.28 -2.2 4,293,914 + Echvi_3618 0.28 -3.0 4,293,925 + Echvi_3618 0.29 +2.0 4,294,004 - Echvi_3618 0.34 -1.1 4,294,088 + Echvi_3618 0.39 -0.6 4,294,108 + Echvi_3618 0.40 +1.7 4,294,226 + Echvi_3618 0.48 +2.0 4,294,226 + Echvi_3618 0.48 -3.1 4,294,246 + Echvi_3618 0.49 -0.2 4,294,247 - Echvi_3618 0.49 -1.0 4,294,249 + Echvi_3618 0.49 -0.0 4,294,249 + Echvi_3618 0.49 +2.7 4,294,282 + Echvi_3618 0.51 +0.1 4,294,283 - Echvi_3618 0.51 +1.5 4,294,283 - Echvi_3618 0.51 +2.0 4,294,285 + Echvi_3618 0.52 +0.8 4,294,285 + Echvi_3618 0.52 -0.1 4,294,286 - Echvi_3618 0.52 +0.2 4,294,322 - Echvi_3618 0.54 -1.4 4,294,326 + Echvi_3618 0.54 +2.6 4,294,326 + Echvi_3618 0.54 -1.6 4,294,429 + Echvi_3618 0.61 +0.5 4,294,429 + Echvi_3618 0.61 -1.5 4,294,429 + Echvi_3618 0.61 +0.6 4,294,429 + Echvi_3618 0.61 -0.7 4,294,430 - Echvi_3618 0.61 +0.7 4,294,432 - Echvi_3618 0.61 -0.5 4,294,433 + Echvi_3618 0.61 -1.6 4,294,462 - Echvi_3618 0.63 -1.4 4,294,462 - Echvi_3618 0.63 -0.6 4,294,479 + Echvi_3618 0.64 -0.9 4,294,498 - Echvi_3618 0.65 +0.1 4,294,499 + Echvi_3618 0.65 -2.4 4,294,499 + Echvi_3618 0.65 -3.3 4,294,563 + Echvi_3618 0.69 -3.0 4,294,617 + Echvi_3618 0.73 +0.4 4,294,617 + Echvi_3618 0.73 -3.0 4,294,618 - Echvi_3618 0.73 +0.9 4,294,618 - Echvi_3618 0.73 +2.3 4,294,668 - Echvi_3618 0.76 -1.4 4,294,723 + Echvi_3618 0.79 +1.1 4,294,723 + Echvi_3618 0.79 -0.7 4,294,724 - Echvi_3618 0.79 -4.0 4,294,724 - +2.0 4,294,724 - Echvi_3618 0.79 +0.1 4,294,731 - Echvi_3618 0.80 +0.3 4,294,767 + Echvi_3618 0.82 +1.5 4,294,767 + Echvi_3618 0.82 +0.6 4,294,768 - Echvi_3618 0.82 -1.3 4,294,768 - Echvi_3618 0.82 -0.6 4,294,768 - Echvi_3618 0.82 +0.8 4,294,793 - Echvi_3618 0.84 -2.5 4,295,001 + +0.5 4,295,001 + -1.6 4,295,001 + +1.3 4,295,001 + -2.7 4,295,001 + -0.3 4,295,002 - -0.4 4,295,002 - +1.9 4,295,002 - -0.6 4,295,004 + +0.8 4,295,004 + +1.6 4,295,004 + +2.5 4,295,005 - +2.8 4,295,079 - -1.9 4,295,093 - +0.4 4,295,121 + +0.1 4,295,186 - +1.8 4,295,189 - +0.6 4,295,196 - -1.0 4,295,267 + Echvi_3619 0.11 -2.0 4,295,268 - Echvi_3619 0.11 -1.1 4,295,274 + Echvi_3619 0.12 +0.4 4,295,274 + Echvi_3619 0.12 +1.4 4,295,400 + Echvi_3619 0.23 +0.7 4,295,401 - Echvi_3619 0.23 +2.0 4,295,401 - Echvi_3619 0.23 +0.2 4,295,401 - Echvi_3619 0.23 +0.8 4,295,412 + Echvi_3619 0.24 -0.3 4,295,416 + Echvi_3619 0.24 -1.4 4,295,416 + Echvi_3619 0.24 -0.3 4,295,417 - Echvi_3619 0.24 +0.6 4,295,417 - Echvi_3619 0.24 +0.4 4,295,417 - Echvi_3619 0.24 -1.3 4,295,417 - Echvi_3619 0.24 +0.4 4,295,417 - Echvi_3619 0.24 +2.6 4,295,417 - Echvi_3619 0.24 -1.5 4,295,465 + Echvi_3619 0.28 +0.2 4,295,466 - Echvi_3619 0.28 -2.1 4,295,509 + Echvi_3619 0.32 -0.6 4,295,509 + Echvi_3619 0.32 -2.1 4,295,509 + Echvi_3619 0.32 -2.2 4,295,510 - Echvi_3619 0.32 -1.4 4,295,510 - Echvi_3619 0.32 +0.4 4,295,548 - Echvi_3619 0.36 -3.4 4,295,621 + Echvi_3619 0.42 +1.9 4,295,665 - Echvi_3619 0.46 +0.4 4,295,665 - Echvi_3619 0.46 -0.8 4,295,668 + Echvi_3619 0.46 +0.3 4,295,668 + Echvi_3619 0.46 +1.8 4,295,697 - Echvi_3619 0.48 -0.3 4,295,697 - Echvi_3619 0.48 +2.2 4,295,699 + Echvi_3619 0.49 +1.1 4,295,699 + Echvi_3619 0.49 -2.3 4,295,699 + Echvi_3619 0.49 +0.5 4,295,699 + Echvi_3619 0.49 -0.8 4,295,699 + Echvi_3619 0.49 -2.0 4,295,699 + Echvi_3619 0.49 +1.0 4,295,699 + Echvi_3619 0.49 +2.7 4,295,700 - Echvi_3619 0.49 -1.3 4,295,700 - Echvi_3619 0.49 -1.3 4,295,702 - Echvi_3619 0.49 +0.8 4,295,779 - Echvi_3619 0.56 +0.1 4,295,785 - Echvi_3619 0.56 -0.7 4,295,818 - Echvi_3619 0.59 +1.9 4,295,818 - Echvi_3619 0.59 +0.0 4,295,878 + Echvi_3619 0.64 -2.1 4,295,879 - Echvi_3619 0.64 -0.6 4,296,028 - Echvi_3619 0.77 -0.1 4,296,037 - Echvi_3619 0.78 -0.2
Or see this region's nucleotide sequence