Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3425 and Echvi_3426 are separated by 89 nucleotides Echvi_3426 and Echvi_3427 are separated by 24 nucleotides Echvi_3427 and Echvi_3428 are separated by 109 nucleotides Echvi_3428 and Echvi_3429 are separated by 419 nucleotides Echvi_3429 and Echvi_3430 are separated by 38 nucleotides Echvi_3430 and Echvi_3431 overlap by 15 nucleotides
Echvi_3425: Echvi_3425 - threonyl-tRNA synthetase, at 4,057,564 to 4,059,513
_3425
Echvi_3426: Echvi_3426 - translation initiation factor IF-3, at 4,059,603 to 4,060,154
_3426
Echvi_3427: Echvi_3427 - ribosomal protein L35, at 4,060,179 to 4,060,373
_3427
Echvi_3428: Echvi_3428 - ribosomal protein L20, at 4,060,483 to 4,060,827
_3428
Echvi_3429: Echvi_3429 - Predicted endonuclease containing a URI domain, at 4,061,247 to 4,061,426
_3429
Echvi_3430: Echvi_3430 - hypothetical protein, at 4,061,465 to 4,061,659
_3430
Echvi_3431: Echvi_3431 - Predicted endonuclease containing a URI domain, at 4,061,645 to 4,061,911
_3431
Position (kb)
4060
4061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4060.145 kb on + strand at 4060.167 kb on + strand at 4060.911 kb on + strand at 4060.926 kb on + strand at 4060.928 kb on + strand at 4060.931 kb on + strand at 4060.931 kb on + strand at 4060.932 kb on - strand at 4061.014 kb on + strand at 4061.015 kb on - strand at 4061.081 kb on + strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.093 kb on - strand at 4061.143 kb on + strand at 4061.160 kb on - strand at 4061.161 kb on + strand at 4061.161 kb on + strand at 4061.162 kb on - strand at 4061.162 kb on - strand at 4061.162 kb on - strand at 4061.164 kb on + strand at 4061.165 kb on - strand at 4061.165 kb on - strand at 4061.259 kb on - strand at 4061.259 kb on - strand at 4061.585 kb on - strand, within Echvi_3430 at 4061.585 kb on - strand, within Echvi_3430 at 4061.590 kb on - strand, within Echvi_3430 at 4061.656 kb on - strand at 4061.656 kb on - strand at 4061.656 kb on - strand at 4061.658 kb on - strand at 4061.658 kb on - strand at 4061.658 kb on - strand at 4061.658 kb on - strand at 4061.664 kb on - strand at 4061.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 4,060,145 + -2.0 4,060,167 + -0.6 4,060,911 + -1.4 4,060,926 + -2.3 4,060,928 + +0.9 4,060,931 + -2.1 4,060,931 + -1.9 4,060,932 - +0.4 4,061,014 + +0.8 4,061,015 - -0.2 4,061,081 + -0.4 4,061,093 - -0.9 4,061,093 - -3.5 4,061,093 - -0.8 4,061,143 + -1.5 4,061,160 - -0.1 4,061,161 + -2.6 4,061,161 + -1.4 4,061,162 - +2.5 4,061,162 - -0.5 4,061,162 - +0.1 4,061,164 + -0.4 4,061,165 - -1.6 4,061,165 - -1.4 4,061,259 - +1.9 4,061,259 - +1.8 4,061,585 - Echvi_3430 0.62 -2.6 4,061,585 - Echvi_3430 0.62 -1.4 4,061,590 - Echvi_3430 0.64 -0.4 4,061,656 - +1.9 4,061,656 - +0.3 4,061,656 - -1.4 4,061,658 - -1.1 4,061,658 - -1.1 4,061,658 - +1.0 4,061,658 - -1.5 4,061,664 - -1.9 4,061,664 - -1.6
Or see this region's nucleotide sequence