Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3384

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3383 and Echvi_3384 are separated by 242 nucleotidesEchvi_3384 and Echvi_3385 are separated by 50 nucleotides Echvi_3383: Echvi_3383 - ATPases involved in chromosome partitioning, at 3,991,572 to 3,992,666 _3383 Echvi_3384: Echvi_3384 - DNA primase, catalytic core, at 3,992,909 to 3,994,858 _3384 Echvi_3385: Echvi_3385 - GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,994,909 to 3,996,177 _3385 Position (kb) 3992 3993 3994 3995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3992.769 kb on + strandat 3992.770 kb on - strandat 3992.803 kb on + strandat 3992.803 kb on + strandat 3992.804 kb on - strandat 3992.810 kb on - strandat 3992.832 kb on - strandat 3992.832 kb on - strandat 3992.832 kb on - strandat 3992.832 kb on - strandat 3992.897 kb on + strandat 3992.897 kb on + strandat 3992.917 kb on - strandat 3992.917 kb on - strandat 3992.917 kb on - strandat 3992.917 kb on - strandat 3992.917 kb on - strandat 3992.926 kb on - strandat 3994.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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3,992,769 + -1.1
3,992,770 - +2.6
3,992,803 + +0.6
3,992,803 + -0.4
3,992,804 - -1.0
3,992,810 - -1.5
3,992,832 - -2.0
3,992,832 - +3.3
3,992,832 - +2.0
3,992,832 - +0.2
3,992,897 + -1.8
3,992,897 + -0.6
3,992,917 - +0.3
3,992,917 - -1.0
3,992,917 - +5.6
3,992,917 - +1.4
3,992,917 - +1.3
3,992,926 - +1.0
3,994,888 + -3.6

Or see this region's nucleotide sequence