Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3240 and Echvi_3241 are separated by 84 nucleotides Echvi_3241 and Echvi_3242 are separated by 248 nucleotides
Echvi_3240: Echvi_3240 - hypothetical protein, at 3,843,297 to 3,844,760
_3240
Echvi_3241: Echvi_3241 - hypothetical protein, at 3,844,845 to 3,845,153
_3241
Echvi_3242: Echvi_3242 - RteC protein., at 3,845,402 to 3,846,247
_3242
Position (kb)
3844
3845
3846 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3844.013 kb on + strand, within Echvi_3240 at 3844.188 kb on + strand, within Echvi_3240 at 3844.219 kb on + strand, within Echvi_3240 at 3844.219 kb on + strand, within Echvi_3240 at 3844.361 kb on + strand, within Echvi_3240 at 3844.739 kb on + strand at 3845.046 kb on + strand, within Echvi_3241 at 3845.087 kb on + strand, within Echvi_3241 at 3845.091 kb on + strand, within Echvi_3241 at 3845.147 kb on + strand at 3845.297 kb on + strand at 3845.297 kb on + strand at 3845.364 kb on + strand at 3845.531 kb on + strand, within Echvi_3242 at 3845.569 kb on + strand, within Echvi_3242 at 3845.675 kb on + strand, within Echvi_3242 at 3845.724 kb on + strand, within Echvi_3242 at 3845.760 kb on + strand, within Echvi_3242 at 3845.790 kb on - strand, within Echvi_3242 at 3845.801 kb on + strand, within Echvi_3242 at 3845.801 kb on + strand, within Echvi_3242 at 3845.801 kb on + strand, within Echvi_3242 at 3845.802 kb on - strand, within Echvi_3242 at 3845.802 kb on - strand, within Echvi_3242 at 3845.803 kb on + strand, within Echvi_3242 at 3845.804 kb on - strand, within Echvi_3242 at 3845.804 kb on - strand, within Echvi_3242 at 3845.810 kb on - strand, within Echvi_3242 at 3845.823 kb on + strand, within Echvi_3242 at 3845.847 kb on + strand, within Echvi_3242 at 3845.900 kb on - strand, within Echvi_3242 at 3845.903 kb on - strand, within Echvi_3242 at 3845.903 kb on - strand, within Echvi_3242 at 3845.919 kb on + strand, within Echvi_3242 at 3845.919 kb on + strand, within Echvi_3242 at 3845.920 kb on - strand, within Echvi_3242 at 3845.920 kb on - strand, within Echvi_3242 at 3845.920 kb on - strand, within Echvi_3242 at 3845.931 kb on - strand, within Echvi_3242 at 3845.961 kb on + strand, within Echvi_3242 at 3845.964 kb on + strand, within Echvi_3242 at 3846.007 kb on - strand, within Echvi_3242 at 3846.019 kb on - strand, within Echvi_3242 at 3846.021 kb on + strand, within Echvi_3242 at 3846.026 kb on + strand, within Echvi_3242 at 3846.026 kb on + strand, within Echvi_3242 at 3846.027 kb on - strand, within Echvi_3242 at 3846.038 kb on + strand, within Echvi_3242 at 3846.038 kb on + strand, within Echvi_3242 at 3846.126 kb on - strand, within Echvi_3242 at 3846.128 kb on + strand, within Echvi_3242 at 3846.129 kb on - strand, within Echvi_3242 at 3846.129 kb on - strand, within Echvi_3242 at 3846.129 kb on - strand, within Echvi_3242 at 3846.141 kb on + strand, within Echvi_3242 at 3846.142 kb on - strand, within Echvi_3242
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,844,013 + Echvi_3240 0.49 +0.2 3,844,188 + Echvi_3240 0.61 -3.0 3,844,219 + Echvi_3240 0.63 -2.6 3,844,219 + Echvi_3240 0.63 +0.9 3,844,361 + Echvi_3240 0.73 +1.0 3,844,739 + +1.6 3,845,046 + Echvi_3241 0.65 -1.4 3,845,087 + Echvi_3241 0.78 -0.6 3,845,091 + Echvi_3241 0.80 -0.8 3,845,147 + +0.5 3,845,297 + +0.0 3,845,297 + +0.4 3,845,364 + +0.5 3,845,531 + Echvi_3242 0.15 -0.0 3,845,569 + Echvi_3242 0.20 -1.0 3,845,675 + Echvi_3242 0.32 -1.6 3,845,724 + Echvi_3242 0.38 +0.6 3,845,760 + Echvi_3242 0.42 +0.4 3,845,790 - Echvi_3242 0.46 +0.8 3,845,801 + Echvi_3242 0.47 +0.6 3,845,801 + Echvi_3242 0.47 +0.8 3,845,801 + Echvi_3242 0.47 -0.3 3,845,802 - Echvi_3242 0.47 -1.5 3,845,802 - Echvi_3242 0.47 -0.6 3,845,803 + Echvi_3242 0.47 +1.2 3,845,804 - Echvi_3242 0.48 +1.0 3,845,804 - Echvi_3242 0.48 +0.0 3,845,810 - Echvi_3242 0.48 -2.6 3,845,823 + Echvi_3242 0.50 -3.2 3,845,847 + Echvi_3242 0.53 +1.4 3,845,900 - Echvi_3242 0.59 +0.1 3,845,903 - Echvi_3242 0.59 +2.6 3,845,903 - Echvi_3242 0.59 +0.7 3,845,919 + Echvi_3242 0.61 -3.5 3,845,919 + Echvi_3242 0.61 +0.4 3,845,920 - Echvi_3242 0.61 -1.0 3,845,920 - Echvi_3242 0.61 -2.6 3,845,920 - Echvi_3242 0.61 -2.8 3,845,931 - Echvi_3242 0.63 +3.4 3,845,961 + Echvi_3242 0.66 -2.7 3,845,964 + Echvi_3242 0.66 +1.0 3,846,007 - Echvi_3242 0.72 +2.2 3,846,019 - Echvi_3242 0.73 +0.5 3,846,021 + Echvi_3242 0.73 -0.4 3,846,026 + Echvi_3242 0.74 +0.4 3,846,026 + Echvi_3242 0.74 +1.0 3,846,027 - Echvi_3242 0.74 +1.6 3,846,038 + Echvi_3242 0.75 -1.4 3,846,038 + Echvi_3242 0.75 +0.7 3,846,126 - Echvi_3242 0.86 -0.3 3,846,128 + Echvi_3242 0.86 +0.8 3,846,129 - Echvi_3242 0.86 -1.6 3,846,129 - Echvi_3242 0.86 -1.1 3,846,129 - Echvi_3242 0.86 +2.0 3,846,141 + Echvi_3242 0.87 -0.9 3,846,142 - Echvi_3242 0.87 +0.8
Or see this region's nucleotide sequence