Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3058 and Echvi_3059 are separated by 26 nucleotides Echvi_3059 and Echvi_3060 are separated by 3 nucleotides Echvi_3060 and Echvi_3061 overlap by 4 nucleotides Echvi_3061 and Echvi_3062 are separated by 129 nucleotides
Echvi_3058: Echvi_3058 - Protein of unknown function (DUF1094)., at 3,652,477 to 3,652,896
_3058
Echvi_3059: Echvi_3059 - FeS assembly SUF system protein, at 3,652,923 to 3,653,264
_3059
Echvi_3060: Echvi_3060 - SufE protein probably involved in Fe-S center assembly, at 3,653,268 to 3,653,699
_3060
Echvi_3061: Echvi_3061 - cysteine desulfurases, SufS subfamily, at 3,653,696 to 3,654,919
_3061
Echvi_3062: Echvi_3062 - FeS assembly protein SufD, at 3,655,049 to 3,656,299
_3062
Position (kb)
3653
3654
3655 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3652.768 kb on - strand, within Echvi_3058 at 3652.876 kb on + strand at 3652.897 kb on - strand at 3652.915 kb on + strand at 3652.916 kb on - strand at 3652.916 kb on - strand at 3652.924 kb on + strand at 3653.265 kb on - strand at 3654.987 kb on - strand at 3655.016 kb on - strand at 3655.051 kb on - strand at 3655.053 kb on - strand at 3655.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,652,768 - Echvi_3058 0.69 +0.5 3,652,876 + -0.5 3,652,897 - +3.5 3,652,915 + -1.5 3,652,916 - +0.5 3,652,916 - -3.0 3,652,924 + -0.9 3,653,265 - -0.2 3,654,987 - +2.2 3,655,016 - -0.2 3,655,051 - +0.5 3,655,053 - -2.2 3,655,053 - +0.3
Or see this region's nucleotide sequence