Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3056 and Echvi_3057 are separated by 491 nucleotides Echvi_3057 and Echvi_3058 are separated by 313 nucleotides Echvi_3058 and Echvi_3059 are separated by 26 nucleotides
Echvi_3056: Echvi_3056 - Superfamily II DNA and RNA helicases, at 3,648,682 to 3,650,385
_3056
Echvi_3057: Echvi_3057 - citrate synthase I (hexameric type), at 3,650,877 to 3,652,163
_3057
Echvi_3058: Echvi_3058 - Protein of unknown function (DUF1094)., at 3,652,477 to 3,652,896
_3058
Echvi_3059: Echvi_3059 - FeS assembly SUF system protein, at 3,652,923 to 3,653,264
_3059
Position (kb)
3650
3651
3652
3653 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3650.424 kb on - strand at 3650.424 kb on - strand at 3650.424 kb on - strand at 3650.521 kb on - strand at 3650.552 kb on + strand at 3650.649 kb on + strand at 3650.651 kb on + strand at 3650.651 kb on + strand at 3650.651 kb on + strand at 3650.655 kb on + strand at 3650.655 kb on + strand at 3650.655 kb on + strand at 3650.681 kb on - strand at 3650.722 kb on + strand at 3650.725 kb on + strand at 3650.743 kb on + strand at 3650.779 kb on + strand at 3650.814 kb on - strand at 3650.831 kb on - strand at 3650.843 kb on - strand at 3650.843 kb on - strand at 3650.846 kb on + strand at 3650.853 kb on + strand at 3650.854 kb on - strand at 3650.867 kb on - strand at 3650.874 kb on - strand at 3652.011 kb on - strand, within Echvi_3057 at 3652.181 kb on - strand at 3652.181 kb on - strand at 3652.185 kb on - strand at 3652.224 kb on - strand at 3652.256 kb on - strand at 3652.263 kb on - strand at 3652.267 kb on - strand at 3652.267 kb on - strand at 3652.416 kb on - strand at 3652.465 kb on + strand at 3652.479 kb on - strand at 3652.479 kb on - strand at 3652.768 kb on - strand, within Echvi_3058 at 3652.876 kb on + strand at 3652.897 kb on - strand at 3652.915 kb on + strand at 3652.916 kb on - strand at 3652.916 kb on - strand at 3652.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,650,424 - +0.5 3,650,424 - +1.6 3,650,424 - -1.1 3,650,521 - -0.7 3,650,552 + +0.6 3,650,649 + +1.8 3,650,651 + +0.6 3,650,651 + -0.4 3,650,651 + -0.6 3,650,655 + +1.1 3,650,655 + -2.5 3,650,655 + -0.2 3,650,681 - +0.9 3,650,722 + +1.1 3,650,725 + -2.5 3,650,743 + -1.8 3,650,779 + +2.2 3,650,814 - -1.8 3,650,831 - -3.3 3,650,843 - -0.2 3,650,843 - -0.7 3,650,846 + +1.6 3,650,853 + -0.5 3,650,854 - +0.8 3,650,867 - -2.8 3,650,874 - -0.6 3,652,011 - Echvi_3057 0.88 -3.9 3,652,181 - +0.4 3,652,181 - -0.3 3,652,185 - +0.2 3,652,224 - -1.2 3,652,256 - -0.6 3,652,263 - +1.9 3,652,267 - +0.4 3,652,267 - -1.4 3,652,416 - -1.4 3,652,465 + -0.3 3,652,479 - +0.8 3,652,479 - +0.8 3,652,768 - Echvi_3058 0.69 +0.5 3,652,876 + -0.5 3,652,897 - +3.5 3,652,915 + -1.5 3,652,916 - +0.5 3,652,916 - -3.0 3,652,924 + -0.9
Or see this region's nucleotide sequence