Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2925 and Echvi_2926 are separated by 99 nucleotides Echvi_2926 and Echvi_2927 are separated by 69 nucleotides Echvi_2927 and Echvi_2928 are separated by 10 nucleotides
Echvi_2925: Echvi_2925 - hypothetical protein, at 3,502,899 to 3,503,825
_2925
Echvi_2926: Echvi_2926 - Transketolase, C-terminal subunit, at 3,503,925 to 3,504,893
_2926
Echvi_2927: Echvi_2927 - Transketolase, N-terminal subunit, at 3,504,963 to 3,505,814
_2927
Echvi_2928: Echvi_2928 - Peroxiredoxin, at 3,505,825 to 3,506,274
_2928
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3502.927 kb on + strand at 3502.930 kb on + strand at 3502.939 kb on - strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.961 kb on + strand at 3502.962 kb on - strand at 3502.962 kb on - strand at 3502.962 kb on - strand at 3502.965 kb on + strand at 3502.989 kb on - strand at 3503.151 kb on + strand, within Echvi_2925 at 3503.151 kb on + strand, within Echvi_2925 at 3503.176 kb on - strand, within Echvi_2925 at 3503.376 kb on + strand, within Echvi_2925 at 3503.377 kb on - strand, within Echvi_2925 at 3503.407 kb on - strand, within Echvi_2925 at 3503.427 kb on + strand, within Echvi_2925 at 3503.535 kb on + strand, within Echvi_2925 at 3503.535 kb on + strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.536 kb on - strand, within Echvi_2925 at 3503.539 kb on + strand, within Echvi_2925 at 3503.540 kb on - strand, within Echvi_2925 at 3503.541 kb on + strand, within Echvi_2925 at 3503.541 kb on + strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.542 kb on - strand, within Echvi_2925 at 3503.607 kb on + strand, within Echvi_2925 at 3503.607 kb on + strand, within Echvi_2925 at 3503.641 kb on + strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.642 kb on - strand, within Echvi_2925 at 3503.765 kb on + strand at 3503.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 3,502,927 + -2.2 3,502,930 + +2.2 3,502,939 - -0.5 3,502,961 + +0.4 3,502,961 + +1.4 3,502,961 + +0.9 3,502,961 + -2.0 3,502,961 + +0.5 3,502,961 + -1.4 3,502,961 + -0.9 3,502,962 - -1.8 3,502,962 - -0.8 3,502,962 - -0.2 3,502,965 + +0.6 3,502,989 - +0.2 3,503,151 + Echvi_2925 0.27 +1.1 3,503,151 + Echvi_2925 0.27 -0.3 3,503,176 - Echvi_2925 0.30 +0.8 3,503,376 + Echvi_2925 0.51 +0.3 3,503,377 - Echvi_2925 0.52 -3.1 3,503,407 - Echvi_2925 0.55 -1.1 3,503,427 + Echvi_2925 0.57 -2.6 3,503,535 + Echvi_2925 0.69 +2.6 3,503,535 + Echvi_2925 0.69 -0.7 3,503,536 - Echvi_2925 0.69 +0.9 3,503,536 - Echvi_2925 0.69 -0.6 3,503,536 - Echvi_2925 0.69 -0.3 3,503,536 - Echvi_2925 0.69 +0.1 3,503,539 + Echvi_2925 0.69 +0.7 3,503,540 - Echvi_2925 0.69 -0.3 3,503,541 + Echvi_2925 0.69 -0.0 3,503,541 + Echvi_2925 0.69 -0.5 3,503,542 - Echvi_2925 0.69 +2.5 3,503,542 - Echvi_2925 0.69 -1.4 3,503,542 - Echvi_2925 0.69 -0.1 3,503,607 + Echvi_2925 0.76 +0.6 3,503,607 + Echvi_2925 0.76 -0.9 3,503,641 + Echvi_2925 0.80 +1.1 3,503,642 - Echvi_2925 0.80 -1.3 3,503,642 - Echvi_2925 0.80 -1.3 3,503,642 - Echvi_2925 0.80 +0.1 3,503,642 - Echvi_2925 0.80 -0.3 3,503,765 + +1.1 3,503,846 - +2.5
Or see this region's nucleotide sequence