Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2826

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2825 and Echvi_2826 overlap by 4 nucleotidesEchvi_2826 and Echvi_2827 overlap by 4 nucleotidesEchvi_2827 and Echvi_2828 are separated by 57 nucleotides Echvi_2825: Echvi_2825 - Peptidase family C25., at 3,381,218 to 3,384,502 _2825 Echvi_2826: Echvi_2826 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,384,499 to 3,385,191 _2826 Echvi_2827: Echvi_2827 - Zn-dependent hydrolases, including glyoxylases, at 3,385,188 to 3,385,841 _2827 Echvi_2828: Echvi_2828 - Glycine/D-amino acid oxidases (deaminating), at 3,385,899 to 3,386,951 _2828 Position (kb) 3384 3385 3386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3383.521 kb on + strand, within Echvi_2825at 3383.522 kb on - strand, within Echvi_2825at 3383.522 kb on - strand, within Echvi_2825at 3383.618 kb on - strand, within Echvi_2825at 3383.619 kb on + strand, within Echvi_2825at 3383.619 kb on + strand, within Echvi_2825at 3383.619 kb on + strand, within Echvi_2825at 3383.620 kb on - strand, within Echvi_2825at 3383.620 kb on - strand, within Echvi_2825at 3383.645 kb on + strand, within Echvi_2825at 3383.646 kb on - strand, within Echvi_2825at 3383.756 kb on - strand, within Echvi_2825at 3383.765 kb on + strand, within Echvi_2825at 3383.765 kb on + strand, within Echvi_2825at 3383.902 kb on - strand, within Echvi_2825at 3383.905 kb on - strand, within Echvi_2825at 3383.942 kb on - strand, within Echvi_2825at 3383.942 kb on - strand, within Echvi_2825at 3384.023 kb on - strand, within Echvi_2825at 3384.023 kb on - strand, within Echvi_2825at 3384.031 kb on - strand, within Echvi_2825at 3384.031 kb on - strand, within Echvi_2825at 3384.118 kb on + strand, within Echvi_2825at 3384.138 kb on + strand, within Echvi_2825at 3384.138 kb on + strand, within Echvi_2825at 3384.139 kb on - strand, within Echvi_2825at 3384.141 kb on + strand, within Echvi_2825at 3384.141 kb on + strand, within Echvi_2825at 3384.142 kb on - strand, within Echvi_2825at 3384.149 kb on - strand, within Echvi_2825at 3384.297 kb on - strandat 3384.315 kb on + strandat 3384.316 kb on - strandat 3384.348 kb on - strandat 3384.412 kb on - strandat 3384.465 kb on - strandat 3385.275 kb on + strand, within Echvi_2827at 3385.362 kb on - strand, within Echvi_2827at 3385.362 kb on - strand, within Echvi_2827at 3385.420 kb on - strand, within Echvi_2827at 3385.501 kb on - strand, within Echvi_2827at 3385.518 kb on - strand, within Echvi_2827at 3385.518 kb on - strand, within Echvi_2827at 3385.518 kb on - strand, within Echvi_2827at 3385.529 kb on - strand, within Echvi_2827at 3385.556 kb on - strand, within Echvi_2827at 3385.656 kb on - strand, within Echvi_2827at 3385.742 kb on - strand, within Echvi_2827at 3385.793 kb on - strandat 3385.793 kb on - strandat 3385.793 kb on - strandat 3385.831 kb on - strandat 3385.873 kb on - strandat 3385.873 kb on - strandat 3385.965 kb on - strandat 3386.019 kb on - strand, within Echvi_2828at 3386.113 kb on - strand, within Echvi_2828at 3386.152 kb on - strand, within Echvi_2828at 3386.167 kb on - strand, within Echvi_2828

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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3,383,521 + Echvi_2825 0.70 +2.4
3,383,522 - Echvi_2825 0.70 +0.8
3,383,522 - Echvi_2825 0.70 +1.7
3,383,618 - Echvi_2825 0.73 -0.5
3,383,619 + Echvi_2825 0.73 +5.1
3,383,619 + Echvi_2825 0.73 -3.4
3,383,619 + Echvi_2825 0.73 +0.4
3,383,620 - Echvi_2825 0.73 +1.2
3,383,620 - Echvi_2825 0.73 +0.7
3,383,645 + Echvi_2825 0.74 -0.2
3,383,646 - Echvi_2825 0.74 +0.4
3,383,756 - Echvi_2825 0.77 -1.0
3,383,765 + Echvi_2825 0.78 -0.9
3,383,765 + Echvi_2825 0.78 -2.4
3,383,902 - Echvi_2825 0.82 -1.3
3,383,905 - Echvi_2825 0.82 -0.0
3,383,942 - Echvi_2825 0.83 +0.1
3,383,942 - Echvi_2825 0.83 +0.0
3,384,023 - Echvi_2825 0.85 -0.8
3,384,023 - Echvi_2825 0.85 -0.2
3,384,031 - Echvi_2825 0.86 +1.6
3,384,031 - Echvi_2825 0.86 +1.4
3,384,118 + Echvi_2825 0.88 -1.2
3,384,138 + Echvi_2825 0.89 +1.2
3,384,138 + Echvi_2825 0.89 -2.6
3,384,139 - Echvi_2825 0.89 +0.0
3,384,141 + Echvi_2825 0.89 -1.3
3,384,141 + Echvi_2825 0.89 +1.2
3,384,142 - Echvi_2825 0.89 -3.0
3,384,149 - Echvi_2825 0.89 +2.4
3,384,297 - +1.9
3,384,315 + +0.5
3,384,316 - -1.9
3,384,348 - +1.2
3,384,412 - +0.7
3,384,465 - -1.1
3,385,275 + Echvi_2827 0.13 +2.3
3,385,362 - Echvi_2827 0.27 +0.7
3,385,362 - Echvi_2827 0.27 +1.7
3,385,420 - Echvi_2827 0.35 +1.5
3,385,501 - Echvi_2827 0.48 +1.3
3,385,518 - Echvi_2827 0.50 -1.5
3,385,518 - Echvi_2827 0.50 +0.6
3,385,518 - Echvi_2827 0.50 -0.7
3,385,529 - Echvi_2827 0.52 -1.1
3,385,556 - Echvi_2827 0.56 -2.7
3,385,656 - Echvi_2827 0.72 -0.0
3,385,742 - Echvi_2827 0.85 +2.6
3,385,793 - -1.5
3,385,793 - -3.3
3,385,793 - +1.0
3,385,831 - +1.9
3,385,873 - +1.2
3,385,873 - -2.1
3,385,965 - +2.1
3,386,019 - Echvi_2828 0.11 -1.1
3,386,113 - Echvi_2828 0.20 +1.8
3,386,152 - Echvi_2828 0.24 +1.8
3,386,167 - Echvi_2828 0.25 +1.1

Or see this region's nucleotide sequence