Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1810

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1809 and Echvi_1810 are separated by 118 nucleotidesEchvi_1810 and Echvi_1811 are separated by 12 nucleotides Echvi_1809: Echvi_1809 - tyrosine recombinase XerD, at 2,128,757 to 2,129,662 _1809 Echvi_1810: Echvi_1810 - 3-dehydroquinate dehydratase, type II, at 2,129,781 to 2,130,200 _1810 Echvi_1811: Echvi_1811 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 2,130,213 to 2,131,268 _1811 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2128.785 kb on - strandat 2128.797 kb on + strandat 2128.798 kb on - strandat 2128.818 kb on + strandat 2128.909 kb on + strand, within Echvi_1809at 2128.910 kb on - strand, within Echvi_1809at 2129.238 kb on - strand, within Echvi_1809at 2129.391 kb on + strand, within Echvi_1809at 2129.404 kb on + strand, within Echvi_1809at 2129.760 kb on + strandat 2129.761 kb on - strandat 2129.761 kb on - strandat 2130.199 kb on - strandat 2130.205 kb on + strandat 2130.206 kb on - strandat 2130.206 kb on - strandat 2130.206 kb on - strandat 2130.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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2,128,785 - +0.5
2,128,797 + +1.0
2,128,798 - +0.7
2,128,818 + -1.0
2,128,909 + Echvi_1809 0.17 -1.3
2,128,910 - Echvi_1809 0.17 -1.9
2,129,238 - Echvi_1809 0.53 -2.5
2,129,391 + Echvi_1809 0.70 -0.0
2,129,404 + Echvi_1809 0.71 -1.2
2,129,760 + +2.3
2,129,761 - -0.8
2,129,761 - -2.0
2,130,199 - +0.1
2,130,205 + -2.3
2,130,206 - -0.9
2,130,206 - -0.3
2,130,206 - -2.8
2,130,218 + -1.7

Or see this region's nucleotide sequence