Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1642 and Echvi_1643 are separated by 119 nucleotides Echvi_1643 and Echvi_1644 are separated by 234 nucleotides
Echvi_1642: Echvi_1642 - Acetyl esterase (deacetylase), at 1,898,388 to 1,899,689
_1642
Echvi_1643: Echvi_1643 - Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins, at 1,899,809 to 1,900,933
_1643
Echvi_1644: Echvi_1644 - Endopolygalacturonase, at 1,901,168 to 1,902,712
_1644
Position (kb)
1899
1900
1901 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1898.832 kb on - strand, within Echvi_1642 at 1898.866 kb on + strand, within Echvi_1642 at 1898.881 kb on + strand, within Echvi_1642 at 1898.881 kb on + strand, within Echvi_1642 at 1898.882 kb on - strand, within Echvi_1642 at 1898.882 kb on - strand, within Echvi_1642 at 1898.917 kb on + strand, within Echvi_1642 at 1898.917 kb on + strand, within Echvi_1642 at 1898.918 kb on - strand, within Echvi_1642 at 1898.918 kb on - strand, within Echvi_1642 at 1898.960 kb on - strand, within Echvi_1642 at 1898.960 kb on - strand, within Echvi_1642 at 1898.963 kb on + strand, within Echvi_1642 at 1898.963 kb on + strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1898.964 kb on - strand, within Echvi_1642 at 1899.031 kb on + strand, within Echvi_1642 at 1899.038 kb on + strand, within Echvi_1642 at 1899.039 kb on - strand, within Echvi_1642 at 1899.134 kb on - strand, within Echvi_1642 at 1899.152 kb on + strand, within Echvi_1642 at 1899.175 kb on + strand, within Echvi_1642 at 1899.299 kb on - strand, within Echvi_1642 at 1899.347 kb on - strand, within Echvi_1642 at 1899.401 kb on + strand, within Echvi_1642 at 1899.424 kb on - strand, within Echvi_1642 at 1899.443 kb on + strand, within Echvi_1642 at 1899.443 kb on + strand, within Echvi_1642 at 1899.444 kb on - strand, within Echvi_1642 at 1899.444 kb on - strand, within Echvi_1642 at 1899.484 kb on - strand, within Echvi_1642 at 1899.544 kb on - strand, within Echvi_1642 at 1899.544 kb on - strand, within Echvi_1642 at 1899.679 kb on + strand at 1899.767 kb on + strand at 1899.777 kb on + strand at 1899.799 kb on + strand at 1899.799 kb on + strand at 1899.823 kb on + strand at 1899.842 kb on + strand at 1899.857 kb on + strand at 1899.857 kb on + strand at 1899.858 kb on - strand at 1899.864 kb on + strand at 1899.883 kb on + strand at 1899.883 kb on + strand at 1899.889 kb on + strand at 1899.890 kb on - strand at 1899.891 kb on + strand at 1899.891 kb on + strand at 1899.891 kb on + strand at 1899.892 kb on - strand at 1899.892 kb on - strand at 1899.892 kb on - strand at 1899.935 kb on + strand, within Echvi_1643 at 1900.011 kb on + strand, within Echvi_1643 at 1900.011 kb on + strand, within Echvi_1643 at 1900.011 kb on + strand, within Echvi_1643 at 1900.011 kb on + strand, within Echvi_1643 at 1900.012 kb on - strand, within Echvi_1643 at 1900.116 kb on - strand, within Echvi_1643 at 1900.148 kb on + strand, within Echvi_1643 at 1900.149 kb on - strand, within Echvi_1643 at 1900.158 kb on - strand at 1900.191 kb on + strand, within Echvi_1643 at 1900.250 kb on + strand, within Echvi_1643 at 1900.270 kb on + strand, within Echvi_1643 at 1900.278 kb on + strand, within Echvi_1643 at 1900.305 kb on + strand, within Echvi_1643 at 1900.370 kb on + strand, within Echvi_1643 at 1900.370 kb on + strand, within Echvi_1643 at 1900.370 kb on + strand, within Echvi_1643 at 1900.371 kb on - strand, within Echvi_1643 at 1900.386 kb on + strand, within Echvi_1643 at 1900.387 kb on - strand, within Echvi_1643 at 1900.500 kb on + strand, within Echvi_1643 at 1900.500 kb on + strand, within Echvi_1643 at 1900.500 kb on + strand, within Echvi_1643 at 1900.500 kb on + strand, within Echvi_1643 at 1900.501 kb on - strand, within Echvi_1643 at 1900.501 kb on - strand, within Echvi_1643 at 1900.501 kb on - strand, within Echvi_1643 at 1900.501 kb on - strand, within Echvi_1643 at 1900.535 kb on - strand, within Echvi_1643 at 1900.535 kb on - strand, within Echvi_1643 at 1900.569 kb on + strand, within Echvi_1643 at 1900.582 kb on - strand, within Echvi_1643 at 1900.582 kb on - strand, within Echvi_1643 at 1900.680 kb on + strand, within Echvi_1643 at 1900.680 kb on + strand, within Echvi_1643 at 1900.715 kb on + strand, within Echvi_1643 at 1900.812 kb on + strand, within Echvi_1643 at 1900.812 kb on + strand, within Echvi_1643 at 1900.812 kb on + strand, within Echvi_1643 at 1900.813 kb on - strand, within Echvi_1643 at 1900.939 kb on + strand at 1900.941 kb on + strand at 1900.942 kb on - strand at 1900.942 kb on - strand at 1900.942 kb on - strand at 1900.945 kb on - strand at 1900.960 kb on + strand at 1900.960 kb on + strand at 1900.961 kb on - strand at 1900.961 kb on - strand at 1900.961 kb on - strand at 1900.961 kb on - strand at 1900.983 kb on + strand at 1900.984 kb on - strand at 1900.994 kb on + strand at 1900.994 kb on + strand at 1900.994 kb on + strand at 1900.994 kb on + strand at 1901.045 kb on + strand at 1901.046 kb on - strand at 1901.049 kb on + strand at 1901.068 kb on + strand at 1901.088 kb on - strand at 1901.090 kb on + strand at 1901.091 kb on - strand at 1901.099 kb on - strand at 1901.099 kb on - strand at 1901.102 kb on + strand at 1901.102 kb on + strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.103 kb on - strand at 1901.110 kb on + strand at 1901.119 kb on + strand at 1901.120 kb on - strand at 1901.305 kb on + strand at 1901.306 kb on - strand at 1901.393 kb on + strand, within Echvi_1644 at 1901.393 kb on + strand, within Echvi_1644 at 1901.393 kb on + strand, within Echvi_1644 at 1901.394 kb on - strand, within Echvi_1644 at 1901.394 kb on - strand, within Echvi_1644 at 1901.452 kb on + strand, within Echvi_1644 at 1901.453 kb on - strand, within Echvi_1644 at 1901.453 kb on - strand, within Echvi_1644 at 1901.489 kb on + strand, within Echvi_1644 at 1901.519 kb on - strand, within Echvi_1644 at 1901.539 kb on + strand, within Echvi_1644 at 1901.539 kb on + strand, within Echvi_1644 at 1901.540 kb on - strand, within Echvi_1644 at 1901.540 kb on - strand, within Echvi_1644 at 1901.607 kb on + strand, within Echvi_1644 at 1901.607 kb on + strand, within Echvi_1644 at 1901.607 kb on + strand, within Echvi_1644 at 1901.625 kb on + strand, within Echvi_1644 at 1901.639 kb on + strand, within Echvi_1644 at 1901.640 kb on - strand, within Echvi_1644 at 1901.641 kb on + strand, within Echvi_1644 at 1901.687 kb on + strand, within Echvi_1644 at 1901.759 kb on - strand, within Echvi_1644 at 1901.767 kb on - strand, within Echvi_1644 at 1901.920 kb on + strand, within Echvi_1644 at 1901.920 kb on + strand, within Echvi_1644 at 1901.920 kb on + strand, within Echvi_1644 at 1901.920 kb on + strand, within Echvi_1644 at 1901.928 kb on + strand, within Echvi_1644 at 1901.928 kb on + strand, within Echvi_1644
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,898,832 - Echvi_1642 0.34 -1.3 1,898,866 + Echvi_1642 0.37 +0.1 1,898,881 + Echvi_1642 0.38 -1.4 1,898,881 + Echvi_1642 0.38 -2.5 1,898,882 - Echvi_1642 0.38 -3.0 1,898,882 - Echvi_1642 0.38 +1.7 1,898,917 + Echvi_1642 0.41 +1.2 1,898,917 + Echvi_1642 0.41 -0.5 1,898,918 - Echvi_1642 0.41 -1.0 1,898,918 - Echvi_1642 0.41 +0.5 1,898,960 - Echvi_1642 0.44 -0.6 1,898,960 - Echvi_1642 0.44 -2.8 1,898,963 + Echvi_1642 0.44 -0.9 1,898,963 + Echvi_1642 0.44 +0.8 1,898,964 - Echvi_1642 0.44 +1.6 1,898,964 - Echvi_1642 0.44 +0.7 1,898,964 - Echvi_1642 0.44 -3.1 1,898,964 - Echvi_1642 0.44 +2.0 1,898,964 - Echvi_1642 0.44 -0.9 1,898,964 - Echvi_1642 0.44 +1.7 1,899,031 + Echvi_1642 0.49 +0.2 1,899,038 + Echvi_1642 0.50 +0.2 1,899,039 - Echvi_1642 0.50 -2.1 1,899,134 - Echvi_1642 0.57 -1.6 1,899,152 + Echvi_1642 0.59 +0.9 1,899,175 + Echvi_1642 0.60 +0.1 1,899,299 - Echvi_1642 0.70 -3.8 1,899,347 - Echvi_1642 0.74 -1.8 1,899,401 + Echvi_1642 0.78 -1.3 1,899,424 - Echvi_1642 0.80 -0.3 1,899,443 + Echvi_1642 0.81 -0.8 1,899,443 + Echvi_1642 0.81 -1.6 1,899,444 - Echvi_1642 0.81 -0.8 1,899,444 - Echvi_1642 0.81 -0.5 1,899,484 - Echvi_1642 0.84 +1.2 1,899,544 - Echvi_1642 0.89 -0.8 1,899,544 - Echvi_1642 0.89 -0.9 1,899,679 + -2.6 1,899,767 + +0.2 1,899,777 + -1.6 1,899,799 + -2.4 1,899,799 + +0.1 1,899,823 + -0.6 1,899,842 + +0.5 1,899,857 + +1.4 1,899,857 + -0.3 1,899,858 - -0.3 1,899,864 + -0.3 1,899,883 + +0.6 1,899,883 + -2.2 1,899,889 + -0.1 1,899,890 - +0.2 1,899,891 + -2.5 1,899,891 + -0.3 1,899,891 + +0.4 1,899,892 - +3.2 1,899,892 - +1.0 1,899,892 - -0.3 1,899,935 + Echvi_1643 0.11 -1.6 1,900,011 + Echvi_1643 0.18 -0.8 1,900,011 + Echvi_1643 0.18 -1.4 1,900,011 + Echvi_1643 0.18 -1.4 1,900,011 + Echvi_1643 0.18 +1.7 1,900,012 - Echvi_1643 0.18 +0.1 1,900,116 - Echvi_1643 0.27 +3.3 1,900,148 + Echvi_1643 0.30 -3.1 1,900,149 - Echvi_1643 0.30 -1.5 1,900,158 - +0.9 1,900,191 + Echvi_1643 0.34 +0.2 1,900,250 + Echvi_1643 0.39 -2.3 1,900,270 + Echvi_1643 0.41 -1.9 1,900,278 + Echvi_1643 0.42 -0.8 1,900,305 + Echvi_1643 0.44 -1.2 1,900,370 + Echvi_1643 0.50 +0.6 1,900,370 + Echvi_1643 0.50 -0.6 1,900,370 + Echvi_1643 0.50 +1.4 1,900,371 - Echvi_1643 0.50 -0.3 1,900,386 + Echvi_1643 0.51 -0.3 1,900,387 - Echvi_1643 0.51 -1.3 1,900,500 + Echvi_1643 0.61 +1.5 1,900,500 + Echvi_1643 0.61 -0.1 1,900,500 + Echvi_1643 0.61 -2.6 1,900,500 + Echvi_1643 0.61 +1.3 1,900,501 - Echvi_1643 0.62 +1.2 1,900,501 - Echvi_1643 0.62 -2.6 1,900,501 - Echvi_1643 0.62 +3.1 1,900,501 - Echvi_1643 0.62 +2.0 1,900,535 - Echvi_1643 0.65 +0.6 1,900,535 - Echvi_1643 0.65 -1.7 1,900,569 + Echvi_1643 0.68 -0.3 1,900,582 - Echvi_1643 0.69 -0.1 1,900,582 - Echvi_1643 0.69 -1.2 1,900,680 + Echvi_1643 0.77 +0.8 1,900,680 + Echvi_1643 0.77 -1.7 1,900,715 + Echvi_1643 0.81 -2.5 1,900,812 + Echvi_1643 0.89 -0.5 1,900,812 + Echvi_1643 0.89 +1.3 1,900,812 + Echvi_1643 0.89 -1.5 1,900,813 - Echvi_1643 0.89 -0.6 1,900,939 + -2.0 1,900,941 + -0.3 1,900,942 - -0.5 1,900,942 - +2.5 1,900,942 - -1.1 1,900,945 - -0.5 1,900,960 + +0.9 1,900,960 + -0.0 1,900,961 - -0.8 1,900,961 - -2.1 1,900,961 - -1.4 1,900,961 - +1.5 1,900,983 + +1.0 1,900,984 - -1.0 1,900,994 + +0.9 1,900,994 + -0.3 1,900,994 + -0.1 1,900,994 + -2.0 1,901,045 + +1.3 1,901,046 - -1.4 1,901,049 + -0.9 1,901,068 + +2.5 1,901,088 - -2.1 1,901,090 + -0.3 1,901,091 - +0.5 1,901,099 - +0.3 1,901,099 - +2.0 1,901,102 + +0.2 1,901,102 + +2.6 1,901,103 - +0.5 1,901,103 - -0.2 1,901,103 - -0.8 1,901,103 - +0.1 1,901,103 - -0.8 1,901,103 - -1.1 1,901,103 - -1.5 1,901,110 + -1.7 1,901,119 + +2.3 1,901,120 - +0.5 1,901,305 + +2.5 1,901,306 - -0.3 1,901,393 + Echvi_1644 0.15 -2.3 1,901,393 + Echvi_1644 0.15 -1.6 1,901,393 + Echvi_1644 0.15 -1.3 1,901,394 - Echvi_1644 0.15 -1.9 1,901,394 - Echvi_1644 0.15 +1.8 1,901,452 + Echvi_1644 0.18 -1.8 1,901,453 - Echvi_1644 0.18 +1.4 1,901,453 - Echvi_1644 0.18 +0.2 1,901,489 + Echvi_1644 0.21 +0.9 1,901,519 - Echvi_1644 0.23 +1.1 1,901,539 + Echvi_1644 0.24 -1.3 1,901,539 + Echvi_1644 0.24 -3.1 1,901,540 - Echvi_1644 0.24 -2.5 1,901,540 - Echvi_1644 0.24 -1.3 1,901,607 + Echvi_1644 0.28 -0.5 1,901,607 + Echvi_1644 0.28 -0.5 1,901,607 + Echvi_1644 0.28 -2.2 1,901,625 + Echvi_1644 0.30 -0.9 1,901,639 + Echvi_1644 0.30 +1.5 1,901,640 - Echvi_1644 0.31 -1.7 1,901,641 + Echvi_1644 0.31 -0.3 1,901,687 + Echvi_1644 0.34 -2.5 1,901,759 - Echvi_1644 0.38 -3.5 1,901,767 - Echvi_1644 0.39 +2.5 1,901,920 + Echvi_1644 0.49 +1.2 1,901,920 + Echvi_1644 0.49 +1.5 1,901,920 + Echvi_1644 0.49 -1.3 1,901,920 + Echvi_1644 0.49 -0.8 1,901,928 + Echvi_1644 0.49 -1.6 1,901,928 + Echvi_1644 0.49 +0.4
Or see this region's nucleotide sequence