Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1532 and Echvi_1533 overlap by 26 nucleotides Echvi_1533 and Echvi_1534 overlap by 17 nucleotides Echvi_1534 and Echvi_1535 are separated by 74 nucleotides
Echvi_1532: Echvi_1532 - CAAX amino terminal protease family., at 1,756,953 to 1,757,912
_1532
Echvi_1533: Echvi_1533 - hypothetical protein, at 1,757,887 to 1,758,093
_1533
Echvi_1534: Echvi_1534 - CDP-diglyceride synthetase, at 1,758,077 to 1,758,916
_1534
Echvi_1535: Echvi_1535 - Glutamate dehydrogenase/leucine dehydrogenase, at 1,758,991 to 1,760,268
_1535
Position (kb)
1758
1759 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1757.967 kb on + strand, within Echvi_1533 at 1757.967 kb on + strand, within Echvi_1533 at 1757.968 kb on - strand, within Echvi_1533 at 1758.022 kb on + strand, within Echvi_1533 at 1758.023 kb on - strand, within Echvi_1533 at 1758.072 kb on + strand, within Echvi_1533 at 1758.923 kb on + strand at 1758.970 kb on + strand at 1758.974 kb on + strand at 1758.990 kb on + strand at 1759.059 kb on + strand at 1759.064 kb on + strand at 1759.495 kb on + strand, within Echvi_1535 at 1759.753 kb on + strand, within Echvi_1535 at 1759.754 kb on - strand, within Echvi_1535 at 1759.757 kb on - strand, within Echvi_1535 at 1759.809 kb on + strand, within Echvi_1535
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 1,757,967 + Echvi_1533 0.39 -2.0 1,757,967 + Echvi_1533 0.39 -0.8 1,757,968 - Echvi_1533 0.39 +2.9 1,758,022 + Echvi_1533 0.65 +2.4 1,758,023 - Echvi_1533 0.66 +1.4 1,758,072 + Echvi_1533 0.89 +0.3 1,758,923 + +0.2 1,758,970 + -0.7 1,758,974 + -3.0 1,758,990 + +2.9 1,759,059 + +4.7 1,759,064 + +3.5 1,759,495 + Echvi_1535 0.39 +0.3 1,759,753 + Echvi_1535 0.60 +3.2 1,759,754 - Echvi_1535 0.60 +3.6 1,759,757 - Echvi_1535 0.60 +2.8 1,759,809 + Echvi_1535 0.64 +0.5
Or see this region's nucleotide sequence