Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1526

Experiment: m.b. D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1525 and Echvi_1526 overlap by 41 nucleotidesEchvi_1526 and Echvi_1527 are separated by 126 nucleotides Echvi_1525: Echvi_1525 - hypothetical protein, at 1,750,206 to 1,751,612 _1525 Echvi_1526: Echvi_1526 - Glycogen synthase, at 1,751,572 to 1,752,387 _1526 Echvi_1527: Echvi_1527 - pantoate--beta-alanine ligase, at 1,752,514 to 1,753,371 _1527 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1750.575 kb on - strand, within Echvi_1525at 1750.609 kb on - strand, within Echvi_1525at 1750.726 kb on - strand, within Echvi_1525at 1750.749 kb on - strand, within Echvi_1525at 1750.749 kb on - strand, within Echvi_1525at 1750.775 kb on - strand, within Echvi_1525at 1750.839 kb on - strand, within Echvi_1525at 1750.862 kb on - strand, within Echvi_1525at 1750.862 kb on - strand, within Echvi_1525at 1750.869 kb on - strand, within Echvi_1525at 1750.869 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.887 kb on - strand, within Echvi_1525at 1750.941 kb on - strand, within Echvi_1525at 1750.948 kb on - strand, within Echvi_1525at 1751.121 kb on - strand, within Echvi_1525at 1751.174 kb on - strand, within Echvi_1525at 1751.174 kb on - strand, within Echvi_1525at 1751.208 kb on - strand, within Echvi_1525at 1751.337 kb on - strand, within Echvi_1525at 1751.342 kb on - strand, within Echvi_1525at 1751.398 kb on - strand, within Echvi_1525at 1751.418 kb on - strand, within Echvi_1525at 1751.418 kb on - strand, within Echvi_1525at 1751.418 kb on - strand, within Echvi_1525at 1751.418 kb on - strand, within Echvi_1525at 1751.547 kb on - strandat 1751.547 kb on - strandat 1751.551 kb on - strandat 1751.557 kb on - strandat 1751.574 kb on - strandat 1752.431 kb on - strandat 1752.501 kb on + strandat 1752.501 kb on + strandat 1752.501 kb on + strandat 1752.501 kb on + strandat 1752.510 kb on + strandat 1752.510 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
remove
1,750,575 - Echvi_1525 0.26 +3.0
1,750,609 - Echvi_1525 0.29 +3.0
1,750,726 - Echvi_1525 0.37 +1.3
1,750,749 - Echvi_1525 0.39 +2.1
1,750,749 - Echvi_1525 0.39 +0.9
1,750,775 - Echvi_1525 0.40 +2.5
1,750,839 - Echvi_1525 0.45 +1.4
1,750,862 - Echvi_1525 0.47 +2.2
1,750,862 - Echvi_1525 0.47 +2.4
1,750,869 - Echvi_1525 0.47 +2.4
1,750,869 - Echvi_1525 0.47 +1.7
1,750,887 - Echvi_1525 0.48 +2.0
1,750,887 - Echvi_1525 0.48 +1.3
1,750,887 - Echvi_1525 0.48 +1.8
1,750,941 - Echvi_1525 0.52 +1.4
1,750,948 - Echvi_1525 0.53 +2.6
1,751,121 - Echvi_1525 0.65 +0.2
1,751,174 - Echvi_1525 0.69 +1.5
1,751,174 - Echvi_1525 0.69 +2.1
1,751,208 - Echvi_1525 0.71 +2.8
1,751,337 - Echvi_1525 0.80 +2.7
1,751,342 - Echvi_1525 0.81 +2.1
1,751,398 - Echvi_1525 0.85 +0.9
1,751,418 - Echvi_1525 0.86 +2.7
1,751,418 - Echvi_1525 0.86 +2.9
1,751,418 - Echvi_1525 0.86 +2.8
1,751,418 - Echvi_1525 0.86 +2.1
1,751,547 - +2.0
1,751,547 - +5.0
1,751,551 - +3.4
1,751,557 - +4.7
1,751,574 - +4.2
1,752,431 - -0.7
1,752,501 + -1.0
1,752,501 + +1.6
1,752,501 + -2.2
1,752,501 + +1.6
1,752,510 + -1.5
1,752,510 + +0.0

Or see this region's nucleotide sequence