Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1084

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1083 and Echvi_1084 are separated by 102 nucleotidesEchvi_1084 and Echvi_1085 are separated by 157 nucleotidesEchvi_1085 and Echvi_1086 are separated by 1 nucleotides Echvi_1083: Echvi_1083 - N-acyl-D-aspartate/D-glutamate deacylase, at 1,244,220 to 1,245,902 _1083 Echvi_1084: Echvi_1084 - hypothetical protein, at 1,246,005 to 1,246,676 _1084 Echvi_1085: Echvi_1085 - hypothetical protein, at 1,246,834 to 1,247,199 _1085 Echvi_1086: Echvi_1086 - hypothetical protein, at 1,247,201 to 1,247,527 _1086 Position (kb) 1246 1247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.011 kb on + strand, within Echvi_1083at 1245.012 kb on - strand, within Echvi_1083at 1245.012 kb on - strand, within Echvi_1083at 1245.209 kb on - strand, within Echvi_1083at 1245.220 kb on + strand, within Echvi_1083at 1245.268 kb on + strand, within Echvi_1083at 1245.268 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.284 kb on - strand, within Echvi_1083at 1245.472 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.503 kb on - strand, within Echvi_1083at 1245.503 kb on - strand, within Echvi_1083at 1245.681 kb on + strand, within Echvi_1083at 1245.702 kb on + strand, within Echvi_1083at 1245.702 kb on + strand, within Echvi_1083at 1245.703 kb on - strand, within Echvi_1083at 1245.703 kb on - strand, within Echvi_1083at 1245.738 kb on + strandat 1245.781 kb on + strandat 1245.781 kb on + strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.867 kb on + strandat 1245.876 kb on + strandat 1245.877 kb on - strandat 1245.877 kb on - strandat 1245.877 kb on - strandat 1245.907 kb on + strandat 1245.907 kb on + strandat 1245.907 kb on + strandat 1245.908 kb on - strandat 1245.908 kb on - strandat 1245.924 kb on + strandat 1245.925 kb on - strandat 1245.929 kb on + strandat 1245.929 kb on + strandat 1245.929 kb on + strandat 1245.930 kb on - strandat 1245.930 kb on - strandat 1245.931 kb on + strandat 1246.006 kb on + strandat 1246.006 kb on + strandat 1246.006 kb on + strandat 1246.007 kb on - strandat 1246.043 kb on + strandat 1246.047 kb on + strandat 1246.048 kb on - strandat 1246.060 kb on + strandat 1246.060 kb on + strandat 1246.061 kb on - strandat 1246.064 kb on + strandat 1246.075 kb on + strand, within Echvi_1084at 1246.075 kb on + strand, within Echvi_1084at 1246.083 kb on + strand, within Echvi_1084at 1246.084 kb on - strand, within Echvi_1084at 1246.090 kb on + strand, within Echvi_1084at 1246.107 kb on - strand, within Echvi_1084at 1246.113 kb on - strand, within Echvi_1084at 1246.141 kb on + strand, within Echvi_1084at 1246.142 kb on - strand, within Echvi_1084at 1246.142 kb on - strand, within Echvi_1084at 1246.147 kb on + strand, within Echvi_1084at 1246.148 kb on - strand, within Echvi_1084at 1246.148 kb on - strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.174 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.212 kb on - strand, within Echvi_1084at 1246.273 kb on - strand, within Echvi_1084at 1246.298 kb on - strand, within Echvi_1084at 1246.315 kb on - strand, within Echvi_1084at 1246.343 kb on - strand, within Echvi_1084at 1246.355 kb on - strand, within Echvi_1084at 1246.387 kb on - strand, within Echvi_1084at 1246.462 kb on + strand, within Echvi_1084at 1246.463 kb on - strand, within Echvi_1084at 1246.463 kb on - strand, within Echvi_1084at 1246.552 kb on + strand, within Echvi_1084at 1246.553 kb on - strand, within Echvi_1084at 1246.553 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.653 kb on - strandat 1246.706 kb on + strandat 1246.706 kb on + strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.726 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.835 kb on + strandat 1246.836 kb on - strandat 1246.867 kb on + strandat 1246.867 kb on + strandat 1246.962 kb on - strand, within Echvi_1085at 1246.962 kb on - strand, within Echvi_1085at 1246.983 kb on + strand, within Echvi_1085at 1246.983 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.990 kb on + strand, within Echvi_1085at 1246.991 kb on - strand, within Echvi_1085at 1246.991 kb on - strand, within Echvi_1085at 1246.991 kb on - strand, within Echvi_1085at 1246.993 kb on - strand, within Echvi_1085at 1246.993 kb on - strand, within Echvi_1085at 1246.993 kb on - strand, within Echvi_1085at 1247.047 kb on - strand, within Echvi_1085at 1247.047 kb on - strand, within Echvi_1085at 1247.047 kb on - strand, within Echvi_1085at 1247.080 kb on + strand, within Echvi_1085at 1247.146 kb on - strand, within Echvi_1085at 1247.185 kb on - strandat 1247.185 kb on - strandat 1247.186 kb on + strandat 1247.186 kb on + strandat 1247.187 kb on - strandat 1247.187 kb on - strandat 1247.187 kb on - strandat 1247.225 kb on - strandat 1247.252 kb on + strand, within Echvi_1086at 1247.252 kb on + strand, within Echvi_1086at 1247.252 kb on + strand, within Echvi_1086at 1247.253 kb on - strand, within Echvi_1086at 1247.284 kb on - strand, within Echvi_1086at 1247.284 kb on - strand, within Echvi_1086at 1247.284 kb on - strand, within Echvi_1086at 1247.321 kb on + strand, within Echvi_1086at 1247.321 kb on + strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.322 kb on - strand, within Echvi_1086at 1247.328 kb on + strand, within Echvi_1086at 1247.329 kb on - strand, within Echvi_1086at 1247.340 kb on - strand, within Echvi_1086at 1247.357 kb on - strand, within Echvi_1086at 1247.357 kb on - strand, within Echvi_1086at 1247.383 kb on + strand, within Echvi_1086at 1247.385 kb on + strand, within Echvi_1086at 1247.386 kb on - strand, within Echvi_1086at 1247.459 kb on + strand, within Echvi_1086at 1247.459 kb on + strand, within Echvi_1086at 1247.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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1,245,007 + Echvi_1083 0.47 +0.0
1,245,007 + Echvi_1083 0.47 +1.4
1,245,007 + Echvi_1083 0.47 -1.1
1,245,007 + Echvi_1083 0.47 +0.5
1,245,007 + Echvi_1083 0.47 -0.2
1,245,007 + Echvi_1083 0.47 -2.3
1,245,007 + Echvi_1083 0.47 -1.0
1,245,008 - Echvi_1083 0.47 +0.8
1,245,008 - Echvi_1083 0.47 -0.8
1,245,008 - Echvi_1083 0.47 -0.1
1,245,008 - Echvi_1083 0.47 -0.1
1,245,008 - Echvi_1083 0.47 +0.9
1,245,008 - Echvi_1083 0.47 -2.3
1,245,008 - Echvi_1083 0.47 +2.6
1,245,008 - Echvi_1083 0.47 +0.4
1,245,008 - Echvi_1083 0.47 +1.9
1,245,008 - Echvi_1083 0.47 -0.1
1,245,011 + Echvi_1083 0.47 -1.8
1,245,012 - Echvi_1083 0.47 +0.7
1,245,012 - Echvi_1083 0.47 -2.0
1,245,209 - Echvi_1083 0.59 -0.3
1,245,220 + Echvi_1083 0.59 +3.1
1,245,268 + Echvi_1083 0.62 +0.1
1,245,268 + Echvi_1083 0.62 +0.3
1,245,283 + Echvi_1083 0.63 +1.9
1,245,283 + Echvi_1083 0.63 -1.3
1,245,283 + Echvi_1083 0.63 +1.0
1,245,283 + Echvi_1083 0.63 +0.7
1,245,284 - Echvi_1083 0.63 -2.5
1,245,472 + Echvi_1083 0.74 -0.1
1,245,502 + Echvi_1083 0.76 +1.5
1,245,502 + Echvi_1083 0.76 -2.2
1,245,502 + Echvi_1083 0.76 +1.8
1,245,503 - Echvi_1083 0.76 +0.7
1,245,503 - Echvi_1083 0.76 -0.7
1,245,681 + Echvi_1083 0.87 +0.0
1,245,702 + Echvi_1083 0.88 -3.7
1,245,702 + Echvi_1083 0.88 +0.4
1,245,703 - Echvi_1083 0.88 -2.1
1,245,703 - Echvi_1083 0.88 -2.4
1,245,738 + +0.4
1,245,781 + +1.0
1,245,781 + +0.5
1,245,782 - -1.8
1,245,782 - +0.9
1,245,782 - -1.7
1,245,782 - -2.9
1,245,782 - -0.8
1,245,782 - -1.3
1,245,867 + +2.6
1,245,876 + +0.9
1,245,877 - -2.0
1,245,877 - +0.2
1,245,877 - +2.5
1,245,907 + +1.3
1,245,907 + -1.4
1,245,907 + -1.5
1,245,908 - -0.3
1,245,908 - -1.8
1,245,924 + -1.2
1,245,925 - -3.1
1,245,929 + -3.1
1,245,929 + -0.2
1,245,929 + +4.5
1,245,930 - +1.5
1,245,930 - +0.3
1,245,931 + -1.0
1,246,006 + +0.7
1,246,006 + +0.3
1,246,006 + -1.2
1,246,007 - -2.3
1,246,043 + +0.7
1,246,047 + +1.2
1,246,048 - -0.3
1,246,060 + -0.2
1,246,060 + -1.1
1,246,061 - -3.2
1,246,064 + -2.2
1,246,075 + Echvi_1084 0.10 -1.4
1,246,075 + Echvi_1084 0.10 +2.1
1,246,083 + Echvi_1084 0.12 -0.8
1,246,084 - Echvi_1084 0.12 +0.2
1,246,090 + Echvi_1084 0.13 +1.3
1,246,107 - Echvi_1084 0.15 -1.5
1,246,113 - Echvi_1084 0.16 -0.5
1,246,141 + Echvi_1084 0.20 -1.8
1,246,142 - Echvi_1084 0.20 -1.3
1,246,142 - Echvi_1084 0.20 +0.7
1,246,147 + Echvi_1084 0.21 +0.2
1,246,148 - Echvi_1084 0.21 +0.2
1,246,148 - Echvi_1084 0.21 -0.2
1,246,157 + Echvi_1084 0.23 -1.8
1,246,157 + Echvi_1084 0.23 +0.5
1,246,157 + Echvi_1084 0.23 +1.4
1,246,157 + Echvi_1084 0.23 -0.9
1,246,161 + Echvi_1084 0.23 +0.3
1,246,161 + Echvi_1084 0.23 -2.4
1,246,161 + Echvi_1084 0.23 +1.3
1,246,161 + Echvi_1084 0.23 +0.6
1,246,162 - Echvi_1084 0.23 -1.6
1,246,162 - Echvi_1084 0.23 +1.4
1,246,162 - Echvi_1084 0.23 -0.7
1,246,174 + Echvi_1084 0.25 -2.5
1,246,211 + Echvi_1084 0.31 +0.9
1,246,211 + Echvi_1084 0.31 -2.3
1,246,211 + Echvi_1084 0.31 -1.2
1,246,211 + Echvi_1084 0.31 -1.7
1,246,212 - Echvi_1084 0.31 -1.2
1,246,273 - Echvi_1084 0.40 -1.4
1,246,298 - Echvi_1084 0.44 -1.9
1,246,315 - Echvi_1084 0.46 -1.2
1,246,343 - Echvi_1084 0.50 -2.1
1,246,355 - Echvi_1084 0.52 -0.1
1,246,387 - Echvi_1084 0.57 -0.7
1,246,462 + Echvi_1084 0.68 +2.0
1,246,463 - Echvi_1084 0.68 -1.2
1,246,463 - Echvi_1084 0.68 -2.2
1,246,552 + Echvi_1084 0.81 -0.8
1,246,553 - Echvi_1084 0.82 +0.2
1,246,553 - Echvi_1084 0.82 -0.1
1,246,572 - Echvi_1084 0.84 -0.3
1,246,572 - Echvi_1084 0.84 +0.7
1,246,572 - Echvi_1084 0.84 -0.4
1,246,653 - +2.3
1,246,706 + +0.9
1,246,706 + +0.1
1,246,707 - +1.6
1,246,707 - -2.0
1,246,707 - +0.1
1,246,707 - +0.7
1,246,726 - +1.4
1,246,815 - -4.3
1,246,815 - +0.9
1,246,815 - -4.5
1,246,815 - -1.0
1,246,835 + -0.1
1,246,836 - +2.5
1,246,867 + +1.4
1,246,867 + -2.0
1,246,962 - Echvi_1085 0.35 -0.4
1,246,962 - Echvi_1085 0.35 -1.0
1,246,983 + Echvi_1085 0.41 -0.1
1,246,983 + Echvi_1085 0.41 -0.9
1,246,990 + Echvi_1085 0.43 -1.4
1,246,990 + Echvi_1085 0.43 -1.3
1,246,990 + Echvi_1085 0.43 +1.8
1,246,990 + Echvi_1085 0.43 +1.5
1,246,990 + Echvi_1085 0.43 +0.4
1,246,990 + Echvi_1085 0.43 -0.7
1,246,991 - Echvi_1085 0.43 +2.3
1,246,991 - Echvi_1085 0.43 -1.0
1,246,991 - Echvi_1085 0.43 -1.1
1,246,993 - Echvi_1085 0.43 +2.0
1,246,993 - Echvi_1085 0.43 -2.1
1,246,993 - Echvi_1085 0.43 +2.2
1,247,047 - Echvi_1085 0.58 +3.0
1,247,047 - Echvi_1085 0.58 -0.5
1,247,047 - Echvi_1085 0.58 -1.5
1,247,080 + Echvi_1085 0.67 -2.0
1,247,146 - Echvi_1085 0.85 +1.5
1,247,185 - -0.8
1,247,185 - +0.6
1,247,186 + -2.1
1,247,186 + +1.6
1,247,187 - -0.6
1,247,187 - -2.2
1,247,187 - -0.1
1,247,225 - -1.7
1,247,252 + Echvi_1086 0.16 +2.5
1,247,252 + Echvi_1086 0.16 +1.5
1,247,252 + Echvi_1086 0.16 -1.8
1,247,253 - Echvi_1086 0.16 -0.1
1,247,284 - Echvi_1086 0.25 +1.6
1,247,284 - Echvi_1086 0.25 -1.0
1,247,284 - Echvi_1086 0.25 -0.1
1,247,321 + Echvi_1086 0.37 +0.7
1,247,321 + Echvi_1086 0.37 -2.9
1,247,322 - Echvi_1086 0.37 -0.7
1,247,322 - Echvi_1086 0.37 -1.3
1,247,322 - Echvi_1086 0.37 -0.7
1,247,322 - Echvi_1086 0.37 -0.3
1,247,322 - Echvi_1086 0.37 -0.2
1,247,322 - Echvi_1086 0.37 +0.7
1,247,328 + Echvi_1086 0.39 +0.1
1,247,329 - Echvi_1086 0.39 +0.3
1,247,340 - Echvi_1086 0.43 +0.2
1,247,357 - Echvi_1086 0.48 +1.0
1,247,357 - Echvi_1086 0.48 -0.8
1,247,383 + Echvi_1086 0.56 -1.0
1,247,385 + Echvi_1086 0.56 +1.9
1,247,386 - Echvi_1086 0.57 -2.6
1,247,459 + Echvi_1086 0.79 -0.5
1,247,459 + Echvi_1086 0.79 -1.7
1,247,563 - -0.1

Or see this region's nucleotide sequence