Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0824 and Echvi_0825 are separated by 45 nucleotides Echvi_0825 and Echvi_0826 are separated by 186 nucleotides Echvi_0826 and Echvi_0827 are separated by 54 nucleotides
Echvi_0824: Echvi_0824 - iron-sulfur cluster binding protein, putative, at 941,965 to 942,924
_0824
Echvi_0825: Echvi_0825 - Holliday junction DNA helicase, RuvB subunit, at 942,970 to 944,007
_0825
Echvi_0826: Echvi_0826 - ribosomal protein S21, at 944,194 to 944,388
_0826
Echvi_0827: Echvi_0827 - Site-specific recombinase XerD, at 944,443 to 945,327
_0827
Position (kb) 942
943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 941.974 kb on - strand at 942.064 kb on - strand, within Echvi_0824 at 942.256 kb on + strand, within Echvi_0824 at 942.256 kb on + strand, within Echvi_0824 at 942.262 kb on - strand, within Echvi_0824 at 942.267 kb on - strand, within Echvi_0824 at 942.267 kb on - strand, within Echvi_0824 at 942.273 kb on + strand, within Echvi_0824 at 942.356 kb on + strand, within Echvi_0824 at 942.357 kb on - strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.453 kb on + strand, within Echvi_0824 at 942.566 kb on + strand, within Echvi_0824 at 942.581 kb on - strand, within Echvi_0824 at 942.623 kb on + strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.624 kb on - strand, within Echvi_0824 at 942.677 kb on + strand, within Echvi_0824 at 942.678 kb on - strand, within Echvi_0824 at 942.678 kb on - strand, within Echvi_0824 at 942.683 kb on + strand, within Echvi_0824 at 942.779 kb on + strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.780 kb on - strand, within Echvi_0824 at 942.783 kb on + strand, within Echvi_0824 at 942.784 kb on - strand, within Echvi_0824 at 942.784 kb on - strand, within Echvi_0824 at 942.852 kb on - strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.963 kb on + strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.964 kb on - strand at 942.965 kb on + strand at 942.972 kb on - strand at 942.972 kb on - strand at 942.972 kb on - strand at 943.029 kb on + strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.030 kb on - strand at 943.278 kb on + strand, within Echvi_0825 at 943.531 kb on + strand, within Echvi_0825 at 943.632 kb on - strand, within Echvi_0825 at 943.749 kb on + strand, within Echvi_0825 at 944.007 kb on + strand at 944.008 kb on - strand at 944.008 kb on - strand at 944.026 kb on + strand at 944.027 kb on - strand at 944.032 kb on + strand at 944.034 kb on + strand at 944.045 kb on + strand at 944.046 kb on - strand at 944.061 kb on - strand at 944.105 kb on + strand at 944.105 kb on + strand at 944.117 kb on + strand at 944.125 kb on - strand at 944.142 kb on - strand at 944.459 kb on + strand at 944.460 kb on - strand at 944.464 kb on + strand at 944.509 kb on + strand at 944.729 kb on + strand, within Echvi_0827 at 944.730 kb on - strand, within Echvi_0827 at 944.859 kb on - strand, within Echvi_0827
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 941,974 - +0.7 942,064 - Echvi_0824 0.10 -3.3 942,256 + Echvi_0824 0.30 +1.7 942,256 + Echvi_0824 0.30 +3.0 942,262 - Echvi_0824 0.31 +2.9 942,267 - Echvi_0824 0.31 -0.5 942,267 - Echvi_0824 0.31 +1.5 942,273 + Echvi_0824 0.32 -3.2 942,356 + Echvi_0824 0.41 -0.7 942,357 - Echvi_0824 0.41 +0.7 942,453 + Echvi_0824 0.51 -0.8 942,453 + Echvi_0824 0.51 +3.4 942,453 + Echvi_0824 0.51 -1.2 942,566 + Echvi_0824 0.63 -2.5 942,581 - Echvi_0824 0.64 +1.9 942,623 + Echvi_0824 0.69 -0.9 942,624 - Echvi_0824 0.69 -2.6 942,624 - Echvi_0824 0.69 -0.3 942,624 - Echvi_0824 0.69 -1.7 942,624 - Echvi_0824 0.69 +1.7 942,677 + Echvi_0824 0.74 +0.9 942,678 - Echvi_0824 0.74 -2.7 942,678 - Echvi_0824 0.74 +0.9 942,683 + Echvi_0824 0.75 -1.2 942,779 + Echvi_0824 0.85 -1.5 942,780 - Echvi_0824 0.85 -3.1 942,780 - Echvi_0824 0.85 -2.4 942,780 - Echvi_0824 0.85 -3.0 942,783 + Echvi_0824 0.85 +1.3 942,784 - Echvi_0824 0.85 -0.8 942,784 - Echvi_0824 0.85 -1.4 942,852 - -0.7 942,963 + -0.8 942,963 + -0.3 942,963 + +1.9 942,963 + -0.6 942,963 + -1.6 942,963 + -1.2 942,963 + +0.4 942,963 + +2.9 942,964 - -1.6 942,964 - +1.6 942,964 - -1.0 942,964 - -0.2 942,964 - -1.3 942,964 - +1.5 942,965 + +0.4 942,972 - -1.9 942,972 - +0.2 942,972 - -2.1 943,029 + +0.2 943,030 - -0.3 943,030 - -2.1 943,030 - -1.4 943,030 - +1.5 943,030 - -1.3 943,030 - -0.7 943,278 + Echvi_0825 0.30 +1.5 943,531 + Echvi_0825 0.54 -0.3 943,632 - Echvi_0825 0.64 -0.8 943,749 + Echvi_0825 0.75 -1.1 944,007 + +1.2 944,008 - -0.7 944,008 - -0.7 944,026 + -0.8 944,027 - +0.5 944,032 + -0.1 944,034 + -1.2 944,045 + -1.4 944,046 - +0.0 944,061 - +0.1 944,105 + -2.8 944,105 + -1.7 944,117 + -3.2 944,125 - -0.9 944,142 - -0.6 944,459 + -0.3 944,460 - -1.2 944,464 + -0.5 944,509 + -2.2 944,729 + Echvi_0827 0.32 -0.5 944,730 - Echvi_0827 0.32 -1.1 944,859 - Echvi_0827 0.47 -0.5
Or see this region's nucleotide sequence