Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0780

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0778 and Echvi_0779 are separated by 185 nucleotidesEchvi_0779 and Echvi_0780 overlap by 8 nucleotidesEchvi_0780 and Echvi_0781 are separated by 3 nucleotidesEchvi_0781 and Echvi_0782 are separated by 2 nucleotides Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342 _0778 Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944 _0779 Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808 _0780 Echvi_0781: Echvi_0781 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 881,812 to 882,603 _0781 Echvi_0782: Echvi_0782 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 882,606 to 883,526 _0782 Position (kb) 879 880 881 882Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 879.005 kb on + strand, within Echvi_0778at 879.006 kb on - strand, within Echvi_0778at 879.008 kb on + strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.052 kb on + strandat 879.212 kb on + strandat 879.213 kb on - strandat 879.213 kb on - strandat 879.213 kb on - strandat 879.275 kb on - strandat 879.275 kb on - strandat 879.366 kb on + strandat 879.367 kb on - strandat 879.378 kb on + strandat 879.386 kb on + strandat 879.429 kb on + strandat 879.435 kb on + strandat 879.447 kb on + strandat 879.447 kb on + strandat 879.447 kb on + strandat 879.456 kb on + strandat 879.456 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.497 kb on + strandat 879.497 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.544 kb on + strandat 879.591 kb on + strand, within Echvi_0779at 879.686 kb on + strand, within Echvi_0779at 879.686 kb on + strand, within Echvi_0779at 879.737 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.865 kb on + strand, within Echvi_0779at 879.865 kb on + strand, within Echvi_0779at 879.866 kb on - strand, within Echvi_0779at 879.866 kb on - strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.868 kb on - strand, within Echvi_0779at 879.879 kb on + strand, within Echvi_0779at 879.914 kb on + strandat 879.914 kb on + strandat 881.809 kb on + strandat 881.811 kb on + strandat 881.811 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.818 kb on - strandat 881.846 kb on + strandat 881.846 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.870 kb on - strandat 881.870 kb on - strandat 881.874 kb on - strandat 881.920 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.925 kb on + strand, within Echvi_0781at 881.974 kb on - strand, within Echvi_0781at 882.006 kb on + strand, within Echvi_0781at 882.007 kb on - strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.069 kb on + strand, within Echvi_0781at 882.109 kb on + strand, within Echvi_0781at 882.110 kb on - strand, within Echvi_0781at 882.121 kb on - strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.232 kb on - strand, within Echvi_0781at 882.239 kb on - strand, within Echvi_0781at 882.283 kb on + strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.337 kb on - strand, within Echvi_0781at 882.347 kb on + strand, within Echvi_0781at 882.348 kb on - strand, within Echvi_0781at 882.452 kb on - strand, within Echvi_0781at 882.476 kb on - strand, within Echvi_0781at 882.482 kb on + strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.486 kb on + strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.493 kb on - strand, within Echvi_0781at 882.538 kb on - strandat 882.545 kb on + strandat 882.550 kb on - strandat 882.609 kb on + strandat 882.610 kb on - strandat 882.627 kb on + strandat 882.627 kb on + strandat 882.667 kb on - strandat 882.717 kb on - strand, within Echvi_0782at 882.776 kb on + strand, within Echvi_0782

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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879,005 + Echvi_0778 0.89 +3.4
879,006 - Echvi_0778 0.89 -2.1
879,008 + Echvi_0778 0.89 -1.9
879,009 - Echvi_0778 0.89 -2.7
879,009 - Echvi_0778 0.89 -2.3
879,009 - Echvi_0778 0.89 -0.1
879,052 + -2.2
879,212 + -1.1
879,213 - -0.8
879,213 - +0.4
879,213 - +1.5
879,275 - -1.4
879,275 - -0.8
879,366 + -1.8
879,367 - +1.1
879,378 + -0.1
879,386 + -2.1
879,429 + -0.3
879,435 + +0.7
879,447 + -1.5
879,447 + -0.9
879,447 + -1.7
879,456 + -1.7
879,456 + -2.2
879,491 + +2.5
879,491 + -0.5
879,491 + +0.1
879,491 + -1.1
879,497 + -0.7
879,497 + -2.1
879,502 + +0.8
879,502 + -0.1
879,502 + -0.1
879,502 + -0.7
879,544 + +2.3
879,591 + Echvi_0779 0.15 +2.6
879,686 + Echvi_0779 0.38 +3.3
879,686 + Echvi_0779 0.38 +6.0
879,737 + Echvi_0779 0.50 -1.0
879,846 + Echvi_0779 0.76 +0.9
879,846 + Echvi_0779 0.76 +2.7
879,846 + Echvi_0779 0.76 +0.3
879,865 + Echvi_0779 0.81 +1.5
879,865 + Echvi_0779 0.81 -0.8
879,866 - Echvi_0779 0.81 +1.5
879,866 - Echvi_0779 0.81 +0.9
879,867 + Echvi_0779 0.81 +0.3
879,867 + Echvi_0779 0.81 -0.8
879,867 + Echvi_0779 0.81 +2.8
879,868 - Echvi_0779 0.82 +0.8
879,879 + Echvi_0779 0.84 +1.1
879,914 + -3.8
879,914 + +0.9
881,809 + +3.1
881,811 + -0.9
881,811 + +2.0
881,817 + -1.4
881,817 + +0.7
881,817 + -2.9
881,818 - -1.3
881,846 + -0.8
881,846 + +0.9
881,869 + -3.0
881,869 + -1.7
881,869 + -0.3
881,870 - +0.4
881,870 - -2.4
881,874 - +2.2
881,920 + Echvi_0781 0.14 -1.9
881,923 + Echvi_0781 0.14 +1.8
881,923 + Echvi_0781 0.14 -2.8
881,925 + Echvi_0781 0.14 -1.5
881,974 - Echvi_0781 0.20 +1.5
882,006 + Echvi_0781 0.24 -1.7
882,007 - Echvi_0781 0.25 +1.6
882,017 + Echvi_0781 0.26 -0.1
882,017 + Echvi_0781 0.26 -1.2
882,022 - Echvi_0781 0.27 +1.3
882,022 - Echvi_0781 0.27 +0.6
882,069 + Echvi_0781 0.32 -0.5
882,109 + Echvi_0781 0.38 -0.9
882,110 - Echvi_0781 0.38 +0.3
882,121 - Echvi_0781 0.39 -0.7
882,217 + Echvi_0781 0.51 -2.4
882,217 + Echvi_0781 0.51 +0.5
882,217 + Echvi_0781 0.51 +0.3
882,217 + Echvi_0781 0.51 -0.6
882,217 + Echvi_0781 0.51 +1.5
882,217 + Echvi_0781 0.51 -0.5
882,217 + Echvi_0781 0.51 +1.9
882,218 - Echvi_0781 0.51 +1.9
882,218 - Echvi_0781 0.51 -0.3
882,218 - Echvi_0781 0.51 -1.2
882,218 - Echvi_0781 0.51 +0.9
882,219 + Echvi_0781 0.51 +0.2
882,219 + Echvi_0781 0.51 +0.5
882,219 + Echvi_0781 0.51 +0.9
882,219 + Echvi_0781 0.51 -1.7
882,219 + Echvi_0781 0.51 +0.9
882,219 + Echvi_0781 0.51 -0.6
882,232 - Echvi_0781 0.53 -1.3
882,239 - Echvi_0781 0.54 +1.5
882,283 + Echvi_0781 0.59 +0.8
882,284 - Echvi_0781 0.60 -1.3
882,284 - Echvi_0781 0.60 +2.5
882,284 - Echvi_0781 0.60 +0.2
882,337 - Echvi_0781 0.66 +0.4
882,347 + Echvi_0781 0.68 +2.2
882,348 - Echvi_0781 0.68 -1.4
882,452 - Echvi_0781 0.81 +0.2
882,476 - Echvi_0781 0.84 -2.7
882,482 + Echvi_0781 0.85 -0.1
882,483 - Echvi_0781 0.85 -1.8
882,483 - Echvi_0781 0.85 +0.5
882,485 - Echvi_0781 0.85 +1.3
882,485 - Echvi_0781 0.85 -0.3
882,485 - Echvi_0781 0.85 -0.7
882,486 + Echvi_0781 0.85 -2.3
882,487 - Echvi_0781 0.85 -2.8
882,487 - Echvi_0781 0.85 -0.9
882,487 - Echvi_0781 0.85 -1.1
882,487 - Echvi_0781 0.85 -2.1
882,489 + Echvi_0781 0.85 +0.5
882,489 + Echvi_0781 0.85 -0.3
882,490 - Echvi_0781 0.86 +3.4
882,490 - Echvi_0781 0.86 +0.6
882,492 + Echvi_0781 0.86 +0.5
882,492 + Echvi_0781 0.86 +1.3
882,493 - Echvi_0781 0.86 -1.8
882,538 - -0.1
882,545 + -0.5
882,550 - -1.1
882,609 + +0.1
882,610 - -0.2
882,627 + +0.8
882,627 + -3.3
882,667 - +1.0
882,717 - Echvi_0782 0.12 -3.4
882,776 + Echvi_0782 0.18 +0.8

Or see this region's nucleotide sequence