Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0716 and Echvi_0717 are separated by 194 nucleotides Echvi_0717 and Echvi_0718 are separated by 22 nucleotides Echvi_0718 and Echvi_0719 are separated by 217 nucleotides
Echvi_0716: Echvi_0716 - Asparaginase, at 808,261 to 809,349
_0716
Echvi_0717: Echvi_0717 - DnaK suppressor protein, at 809,544 to 809,927
_0717
Echvi_0718: Echvi_0718 - segregation and condensation protein B, at 809,950 to 810,510
_0718
Echvi_0719: Echvi_0719 - pseudouridine synthase, at 810,728 to 811,873
_0719
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 809.120 kb on + strand, within Echvi_0716 at 809.120 kb on + strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.121 kb on - strand, within Echvi_0716 at 809.144 kb on - strand, within Echvi_0716 at 809.199 kb on + strand, within Echvi_0716 at 809.303 kb on - strand at 809.323 kb on + strand at 809.388 kb on + strand at 809.396 kb on + strand at 809.402 kb on + strand at 809.408 kb on + strand at 809.408 kb on + strand at 809.408 kb on + strand at 809.410 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.515 kb on + strand at 809.516 kb on - strand at 809.516 kb on - strand at 809.519 kb on + strand at 809.543 kb on + strand at 809.543 kb on + strand at 809.543 kb on + strand at 809.568 kb on + strand at 809.569 kb on - strand at 809.729 kb on + strand, within Echvi_0717 at 809.734 kb on + strand, within Echvi_0717 at 809.735 kb on - strand, within Echvi_0717 at 809.787 kb on - strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.826 kb on + strand, within Echvi_0717 at 809.827 kb on - strand, within Echvi_0717 at 809.850 kb on - strand, within Echvi_0717 at 809.915 kb on - strand at 809.941 kb on + strand at 809.942 kb on - strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.970 kb on + strand at 809.971 kb on - strand at 809.981 kb on + strand at 809.982 kb on - strand at 809.984 kb on + strand at 809.985 kb on - strand at 809.985 kb on - strand at 810.201 kb on - strand, within Echvi_0718 at 810.424 kb on + strand, within Echvi_0718 at 810.424 kb on + strand, within Echvi_0718 at 810.525 kb on + strand at 810.525 kb on + strand at 810.525 kb on + strand at 810.525 kb on + strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.526 kb on - strand at 810.529 kb on - strand at 810.536 kb on + strand at 810.536 kb on + strand at 810.536 kb on + strand at 810.537 kb on - strand at 810.634 kb on - strand at 810.682 kb on - strand at 810.682 kb on - strand at 810.685 kb on - strand at 810.694 kb on - strand at 810.703 kb on + strand at 810.706 kb on - strand at 810.965 kb on + strand, within Echvi_0719 at 810.965 kb on + strand, within Echvi_0719
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 809,120 + Echvi_0716 0.79 +0.0 809,120 + Echvi_0716 0.79 -1.5 809,121 - Echvi_0716 0.79 +0.9 809,121 - Echvi_0716 0.79 -2.2 809,121 - Echvi_0716 0.79 +2.5 809,144 - Echvi_0716 0.81 -1.4 809,199 + Echvi_0716 0.86 -1.1 809,303 - -1.6 809,323 + -0.3 809,388 + -2.7 809,396 + +1.3 809,402 + -2.2 809,408 + -0.6 809,408 + -0.6 809,408 + +0.9 809,410 + +0.8 809,515 + +0.8 809,515 + +0.4 809,515 + +0.3 809,515 + +1.1 809,516 - +1.9 809,516 - +3.6 809,519 + -0.3 809,543 + +1.5 809,543 + +0.8 809,543 + -0.1 809,568 + -1.9 809,569 - +2.8 809,729 + Echvi_0717 0.48 +1.1 809,734 + Echvi_0717 0.49 +2.5 809,735 - Echvi_0717 0.50 +3.8 809,787 - Echvi_0717 0.63 +3.2 809,826 + Echvi_0717 0.73 +4.9 809,826 + Echvi_0717 0.73 -0.9 809,826 + Echvi_0717 0.73 +0.7 809,827 - Echvi_0717 0.74 +0.3 809,850 - Echvi_0717 0.80 +3.0 809,915 - +1.5 809,941 + -0.5 809,942 - -3.0 809,970 + -1.5 809,970 + -2.0 809,970 + -1.5 809,970 + -0.9 809,970 + +1.3 809,971 - +1.6 809,981 + -1.6 809,982 - +1.8 809,984 + -1.8 809,985 - -0.5 809,985 - -0.1 810,201 - Echvi_0718 0.45 -2.4 810,424 + Echvi_0718 0.84 -1.3 810,424 + Echvi_0718 0.84 +2.5 810,525 + -0.5 810,525 + +1.6 810,525 + -1.0 810,525 + +0.4 810,526 - -2.3 810,526 - +0.1 810,526 - -0.1 810,526 - -0.3 810,526 - +0.9 810,526 - -1.7 810,526 - -0.7 810,526 - +1.8 810,529 - -1.6 810,536 + -0.8 810,536 + -1.2 810,536 + -2.4 810,537 - +0.2 810,634 - -2.4 810,682 - -2.4 810,682 - +0.2 810,685 - -2.7 810,694 - -0.7 810,703 + -1.8 810,706 - +1.5 810,965 + Echvi_0719 0.21 +0.5 810,965 + Echvi_0719 0.21 -0.3
Or see this region's nucleotide sequence