Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0685 and Echvi_0686 are separated by 163 nucleotides Echvi_0686 and Echvi_0687 are separated by 328 nucleotides
Echvi_0685: Echvi_0685 - Response regulator of the LytR/AlgR family, at 773,395 to 774,165
_0685
Echvi_0686: Echvi_0686 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 774,329 to 775,747
_0686
Echvi_0687: Echvi_0687 - glycyl-tRNA synthetase, dimeric type, at 776,076 to 777,542
_0687
Position (kb) 774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 773.329 kb on + strand at 773.338 kb on - strand at 773.349 kb on + strand at 773.349 kb on + strand at 773.351 kb on + strand at 773.354 kb on + strand at 773.354 kb on + strand at 773.360 kb on - strand at 773.385 kb on + strand at 773.385 kb on + strand at 773.386 kb on - strand at 773.387 kb on + strand at 773.402 kb on + strand at 773.444 kb on + strand at 773.445 kb on - strand at 773.453 kb on + strand at 773.474 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.526 kb on + strand, within Echvi_0685 at 773.527 kb on - strand, within Echvi_0685 at 773.558 kb on + strand, within Echvi_0685 at 773.559 kb on - strand, within Echvi_0685 at 773.611 kb on + strand, within Echvi_0685 at 773.625 kb on - strand, within Echvi_0685 at 773.668 kb on + strand, within Echvi_0685 at 773.668 kb on + strand, within Echvi_0685 at 773.812 kb on - strand, within Echvi_0685 at 773.814 kb on + strand, within Echvi_0685 at 773.814 kb on + strand, within Echvi_0685 at 773.862 kb on + strand, within Echvi_0685 at 773.884 kb on + strand, within Echvi_0685 at 773.884 kb on + strand, within Echvi_0685 at 773.906 kb on - strand, within Echvi_0685 at 773.921 kb on + strand, within Echvi_0685 at 773.921 kb on + strand, within Echvi_0685 at 773.943 kb on - strand, within Echvi_0685 at 774.032 kb on - strand, within Echvi_0685 at 774.092 kb on + strand at 774.093 kb on - strand at 774.096 kb on + strand at 774.097 kb on - strand at 774.097 kb on - strand at 774.098 kb on + strand at 774.099 kb on - strand at 774.099 kb on - strand at 774.126 kb on + strand at 774.164 kb on - strand at 774.171 kb on + strand at 774.214 kb on + strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.215 kb on - strand at 774.216 kb on + strand at 774.232 kb on + strand at 774.233 kb on - strand at 774.241 kb on - strand at 774.241 kb on - strand at 774.241 kb on - strand at 774.251 kb on + strand at 774.252 kb on - strand at 774.260 kb on + strand at 774.260 kb on + strand at 774.261 kb on - strand at 774.263 kb on + strand at 774.264 kb on - strand at 774.271 kb on + strand at 774.271 kb on + strand at 774.271 kb on + strand at 774.272 kb on - strand at 774.324 kb on + strand at 774.328 kb on + strand at 774.328 kb on + strand at 774.329 kb on - strand at 774.329 kb on - strand at 774.334 kb on - strand at 774.334 kb on - strand at 774.491 kb on + strand, within Echvi_0686 at 774.491 kb on + strand, within Echvi_0686 at 774.491 kb on + strand, within Echvi_0686 at 774.492 kb on - strand, within Echvi_0686 at 774.492 kb on - strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.494 kb on + strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.495 kb on - strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.496 kb on + strand, within Echvi_0686 at 774.500 kb on + strand, within Echvi_0686 at 774.500 kb on + strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.501 kb on - strand, within Echvi_0686 at 774.522 kb on - strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.564 kb on + strand, within Echvi_0686 at 774.635 kb on - strand, within Echvi_0686 at 774.705 kb on + strand, within Echvi_0686 at 774.705 kb on + strand, within Echvi_0686 at 774.706 kb on - strand, within Echvi_0686 at 774.780 kb on + strand, within Echvi_0686 at 774.803 kb on + strand at 774.803 kb on + strand, within Echvi_0686 at 774.803 kb on + strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.804 kb on - strand, within Echvi_0686 at 774.805 kb on + strand, within Echvi_0686 at 774.806 kb on - strand, within Echvi_0686 at 774.848 kb on - strand, within Echvi_0686 at 774.848 kb on - strand, within Echvi_0686 at 774.886 kb on - strand, within Echvi_0686 at 774.911 kb on - strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.959 kb on + strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.960 kb on - strand, within Echvi_0686 at 774.963 kb on - strand, within Echvi_0686 at 774.963 kb on - strand, within Echvi_0686 at 775.112 kb on + strand, within Echvi_0686 at 775.136 kb on + strand, within Echvi_0686 at 775.190 kb on + strand, within Echvi_0686 at 775.200 kb on + strand, within Echvi_0686 at 775.200 kb on + strand, within Echvi_0686 at 775.201 kb on - strand, within Echvi_0686 at 775.221 kb on - strand, within Echvi_0686 at 775.221 kb on - strand, within Echvi_0686 at 775.246 kb on - strand, within Echvi_0686 at 775.260 kb on - strand, within Echvi_0686 at 775.276 kb on + strand, within Echvi_0686 at 775.277 kb on - strand, within Echvi_0686 at 775.296 kb on - strand, within Echvi_0686 at 775.296 kb on - strand, within Echvi_0686 at 775.296 kb on - strand, within Echvi_0686 at 775.317 kb on + strand, within Echvi_0686 at 775.333 kb on + strand, within Echvi_0686 at 775.409 kb on + strand, within Echvi_0686 at 775.460 kb on - strand, within Echvi_0686 at 775.470 kb on + strand, within Echvi_0686 at 775.478 kb on + strand, within Echvi_0686 at 775.478 kb on + strand, within Echvi_0686 at 775.479 kb on - strand, within Echvi_0686 at 775.485 kb on + strand, within Echvi_0686 at 775.485 kb on + strand, within Echvi_0686 at 775.485 kb on + strand, within Echvi_0686 at 775.485 kb on + strand, within Echvi_0686 at 775.500 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.560 kb on + strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.561 kb on - strand, within Echvi_0686 at 775.595 kb on + strand, within Echvi_0686 at 775.599 kb on - strand, within Echvi_0686 at 775.631 kb on - strand at 775.676 kb on + strand at 775.676 kb on + strand at 775.677 kb on - strand at 775.727 kb on - strand at 775.774 kb on - strand at 775.774 kb on - strand at 775.783 kb on - strand at 775.865 kb on + strand at 775.865 kb on + strand at 775.866 kb on - strand at 775.869 kb on + strand at 775.869 kb on + strand at 775.869 kb on + strand at 775.869 kb on + strand at 775.869 kb on + strand at 775.870 kb on - strand at 775.873 kb on + strand at 775.873 kb on + strand at 775.873 kb on + strand at 775.873 kb on + strand at 775.874 kb on + strand at 775.874 kb on - strand at 775.874 kb on - strand at 775.889 kb on + strand at 775.889 kb on + strand at 775.988 kb on + strand at 775.989 kb on - strand at 776.016 kb on - strand at 776.038 kb on + strand at 776.039 kb on - strand at 776.039 kb on - strand at 776.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 773,329 + -2.1 773,338 - +0.1 773,349 + -3.6 773,349 + -1.7 773,351 + -2.6 773,354 + +0.5 773,354 + +1.3 773,360 - +2.2 773,385 + +0.7 773,385 + +0.9 773,386 - -1.2 773,387 + -1.0 773,402 + +0.8 773,444 + -0.8 773,445 - +0.3 773,453 + +0.3 773,474 + Echvi_0685 0.10 -2.4 773,526 + Echvi_0685 0.17 -2.3 773,526 + Echvi_0685 0.17 +1.1 773,526 + Echvi_0685 0.17 -0.3 773,527 - Echvi_0685 0.17 -1.5 773,558 + Echvi_0685 0.21 +0.6 773,559 - Echvi_0685 0.21 -1.7 773,611 + Echvi_0685 0.28 -2.0 773,625 - Echvi_0685 0.30 -3.2 773,668 + Echvi_0685 0.35 -3.1 773,668 + Echvi_0685 0.35 +0.9 773,812 - Echvi_0685 0.54 -1.7 773,814 + Echvi_0685 0.54 +1.0 773,814 + Echvi_0685 0.54 +2.6 773,862 + Echvi_0685 0.61 +0.9 773,884 + Echvi_0685 0.63 -0.4 773,884 + Echvi_0685 0.63 +2.3 773,906 - Echvi_0685 0.66 +1.9 773,921 + Echvi_0685 0.68 -0.3 773,921 + Echvi_0685 0.68 -2.1 773,943 - Echvi_0685 0.71 +0.2 774,032 - Echvi_0685 0.83 -2.8 774,092 + +1.4 774,093 - -0.0 774,096 + -2.1 774,097 - +0.1 774,097 - -0.1 774,098 + -3.7 774,099 - +1.9 774,099 - +2.0 774,126 + -1.8 774,164 - +0.9 774,171 + -2.9 774,214 + +1.2 774,215 - -1.1 774,215 - -2.4 774,215 - +1.5 774,215 - -3.1 774,215 - -0.3 774,216 + -0.0 774,232 + +1.4 774,233 - +0.2 774,241 - -1.8 774,241 - +1.0 774,241 - +0.8 774,251 + +2.5 774,252 - +0.0 774,260 + +1.7 774,260 + -0.1 774,261 - -1.5 774,263 + +1.0 774,264 - +2.2 774,271 + -0.7 774,271 + +0.8 774,271 + +0.5 774,272 - -3.0 774,324 + +0.8 774,328 + -4.1 774,328 + -2.1 774,329 - -1.1 774,329 - -0.1 774,334 - +0.3 774,334 - +1.5 774,491 + Echvi_0686 0.11 +0.9 774,491 + Echvi_0686 0.11 -3.0 774,491 + Echvi_0686 0.11 -0.1 774,492 - Echvi_0686 0.11 +0.3 774,492 - Echvi_0686 0.11 -1.8 774,494 + Echvi_0686 0.12 -0.4 774,494 + Echvi_0686 0.12 -2.2 774,494 + Echvi_0686 0.12 +0.1 774,495 - Echvi_0686 0.12 -2.3 774,495 - Echvi_0686 0.12 -1.1 774,495 - Echvi_0686 0.12 +0.9 774,496 + Echvi_0686 0.12 +0.5 774,496 + Echvi_0686 0.12 -0.7 774,496 + Echvi_0686 0.12 -2.1 774,500 + Echvi_0686 0.12 -0.7 774,500 + Echvi_0686 0.12 -0.3 774,501 - Echvi_0686 0.12 +0.9 774,501 - Echvi_0686 0.12 -2.0 774,501 - Echvi_0686 0.12 +0.5 774,522 - Echvi_0686 0.14 -0.7 774,564 + Echvi_0686 0.17 -1.2 774,564 + Echvi_0686 0.17 -0.5 774,564 + Echvi_0686 0.17 -0.1 774,564 + Echvi_0686 0.17 +1.8 774,635 - Echvi_0686 0.22 +0.7 774,705 + Echvi_0686 0.26 +1.5 774,705 + Echvi_0686 0.26 -0.3 774,706 - Echvi_0686 0.27 +2.3 774,780 + Echvi_0686 0.32 -1.9 774,803 + +0.9 774,803 + Echvi_0686 0.33 +0.2 774,803 + Echvi_0686 0.33 -0.9 774,804 - Echvi_0686 0.33 -0.7 774,804 - Echvi_0686 0.33 -2.0 774,804 - Echvi_0686 0.33 -0.5 774,804 - Echvi_0686 0.33 -1.0 774,805 + Echvi_0686 0.34 -2.7 774,806 - Echvi_0686 0.34 +1.5 774,848 - Echvi_0686 0.37 -1.5 774,848 - Echvi_0686 0.37 -2.0 774,886 - Echvi_0686 0.39 -0.2 774,911 - Echvi_0686 0.41 -2.6 774,959 + Echvi_0686 0.44 -2.6 774,959 + Echvi_0686 0.44 -1.6 774,959 + Echvi_0686 0.44 -1.4 774,960 - Echvi_0686 0.44 +1.9 774,960 - Echvi_0686 0.44 +1.1 774,960 - Echvi_0686 0.44 +2.7 774,960 - Echvi_0686 0.44 -0.0 774,960 - Echvi_0686 0.44 -0.7 774,963 - Echvi_0686 0.45 -1.3 774,963 - Echvi_0686 0.45 -0.4 775,112 + Echvi_0686 0.55 -1.2 775,136 + Echvi_0686 0.57 +1.5 775,190 + Echvi_0686 0.61 -2.1 775,200 + Echvi_0686 0.61 -2.7 775,200 + Echvi_0686 0.61 -0.1 775,201 - Echvi_0686 0.61 +0.5 775,221 - Echvi_0686 0.63 +0.3 775,221 - Echvi_0686 0.63 +2.3 775,246 - Echvi_0686 0.65 -0.2 775,260 - Echvi_0686 0.66 -0.8 775,276 + Echvi_0686 0.67 +0.9 775,277 - Echvi_0686 0.67 +0.7 775,296 - Echvi_0686 0.68 -2.0 775,296 - Echvi_0686 0.68 -1.5 775,296 - Echvi_0686 0.68 +0.9 775,317 + Echvi_0686 0.70 +2.7 775,333 + Echvi_0686 0.71 +0.7 775,409 + Echvi_0686 0.76 +1.2 775,460 - Echvi_0686 0.80 +0.3 775,470 + Echvi_0686 0.80 -1.2 775,478 + Echvi_0686 0.81 +0.4 775,478 + Echvi_0686 0.81 -0.1 775,479 - Echvi_0686 0.81 -0.8 775,485 + Echvi_0686 0.81 +1.8 775,485 + Echvi_0686 0.81 -0.3 775,485 + Echvi_0686 0.81 +1.1 775,485 + Echvi_0686 0.81 -2.0 775,500 + Echvi_0686 0.83 +0.3 775,560 + Echvi_0686 0.87 -1.0 775,560 + Echvi_0686 0.87 -2.1 775,560 + Echvi_0686 0.87 -2.7 775,560 + Echvi_0686 0.87 -1.0 775,560 + Echvi_0686 0.87 -2.7 775,560 + Echvi_0686 0.87 +1.5 775,560 + Echvi_0686 0.87 -1.4 775,561 - Echvi_0686 0.87 -2.2 775,561 - Echvi_0686 0.87 -1.3 775,561 - Echvi_0686 0.87 -0.1 775,561 - Echvi_0686 0.87 -2.2 775,561 - Echvi_0686 0.87 +0.6 775,561 - Echvi_0686 0.87 -0.1 775,561 - Echvi_0686 0.87 +0.9 775,561 - Echvi_0686 0.87 +2.7 775,561 - Echvi_0686 0.87 -0.5 775,561 - Echvi_0686 0.87 +0.1 775,595 + Echvi_0686 0.89 +1.5 775,599 - Echvi_0686 0.89 -0.1 775,631 - +0.2 775,676 + +1.2 775,676 + +1.1 775,677 - +2.1 775,727 - +1.5 775,774 - -1.3 775,774 - -0.9 775,783 - +2.0 775,865 + -1.5 775,865 + -1.0 775,866 - +0.5 775,869 + +0.6 775,869 + -0.1 775,869 + +1.8 775,869 + +1.4 775,869 + -1.3 775,870 - +0.7 775,873 + +0.1 775,873 + +0.3 775,873 + +1.1 775,873 + +1.9 775,874 + +0.7 775,874 - +1.0 775,874 - +1.1 775,889 + -0.1 775,889 + -1.7 775,988 + +0.6 775,989 - +0.3 776,016 - -0.7 776,038 + -0.2 776,039 - +1.2 776,039 - -2.5 776,100 - +0.3
Or see this region's nucleotide sequence