Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0680 and Echvi_0681 are separated by 1 nucleotides Echvi_0681 and Echvi_0682 overlap by 4 nucleotides
Echvi_0680: Echvi_0680 - RND family efflux transporter, MFP subunit, at 764,611 to 765,693
_0680
Echvi_0681: Echvi_0681 - Cation/multidrug efflux pump, at 765,695 to 768,757
_0681
Echvi_0682: Echvi_0682 - Outer membrane protein, at 768,754 to 770,082
_0682
Position (kb) 765
766
767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.931 kb on + strand, within Echvi_0680 at 764.986 kb on + strand, within Echvi_0680 at 764.987 kb on - strand, within Echvi_0680 at 765.049 kb on + strand, within Echvi_0680 at 765.049 kb on + strand, within Echvi_0680 at 765.050 kb on - strand, within Echvi_0680 at 765.050 kb on - strand, within Echvi_0680 at 765.070 kb on + strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.071 kb on - strand, within Echvi_0680 at 765.075 kb on + strand, within Echvi_0680 at 765.076 kb on - strand, within Echvi_0680 at 765.150 kb on - strand, within Echvi_0680 at 765.150 kb on - strand, within Echvi_0680 at 765.210 kb on + strand, within Echvi_0680 at 765.210 kb on + strand, within Echvi_0680 at 765.211 kb on - strand, within Echvi_0680 at 765.211 kb on - strand, within Echvi_0680 at 765.338 kb on - strand, within Echvi_0680 at 765.459 kb on - strand, within Echvi_0680 at 765.459 kb on - strand, within Echvi_0680 at 765.644 kb on + strand at 765.644 kb on + strand at 765.644 kb on + strand at 765.705 kb on + strand at 765.706 kb on - strand at 765.714 kb on + strand at 765.714 kb on + strand at 765.714 kb on + strand at 765.715 kb on - strand at 765.715 kb on - strand at 765.721 kb on + strand at 765.722 kb on - strand at 765.848 kb on + strand at 765.848 kb on + strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.849 kb on - strand at 765.852 kb on + strand at 765.852 kb on + strand at 765.853 kb on - strand at 765.917 kb on - strand at 765.968 kb on - strand at 765.997 kb on + strand at 765.997 kb on + strand at 766.109 kb on - strand, within Echvi_0681 at 766.114 kb on - strand, within Echvi_0681 at 766.171 kb on + strand, within Echvi_0681 at 766.172 kb on - strand, within Echvi_0681 at 766.306 kb on - strand, within Echvi_0681 at 766.312 kb on + strand, within Echvi_0681 at 766.375 kb on - strand, within Echvi_0681 at 766.448 kb on - strand, within Echvi_0681 at 766.573 kb on + strand, within Echvi_0681 at 766.574 kb on - strand, within Echvi_0681 at 766.574 kb on - strand, within Echvi_0681 at 766.579 kb on + strand, within Echvi_0681 at 766.579 kb on + strand, within Echvi_0681 at 766.584 kb on + strand, within Echvi_0681 at 766.584 kb on + strand, within Echvi_0681 at 766.605 kb on + strand, within Echvi_0681 at 766.638 kb on + strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.639 kb on - strand, within Echvi_0681 at 766.664 kb on - strand, within Echvi_0681 at 766.670 kb on + strand, within Echvi_0681 at 766.670 kb on + strand, within Echvi_0681 at 766.671 kb on - strand, within Echvi_0681 at 766.673 kb on - strand, within Echvi_0681 at 766.695 kb on + strand, within Echvi_0681 at 766.695 kb on + strand, within Echvi_0681 at 766.695 kb on + strand, within Echvi_0681 at 766.695 kb on + strand at 766.774 kb on + strand, within Echvi_0681 at 766.775 kb on - strand, within Echvi_0681 at 766.807 kb on - strand, within Echvi_0681 at 766.813 kb on - strand, within Echvi_0681 at 766.826 kb on + strand, within Echvi_0681 at 766.826 kb on + strand, within Echvi_0681 at 766.826 kb on + strand, within Echvi_0681 at 766.827 kb on - strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.908 kb on + strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.909 kb on - strand, within Echvi_0681 at 766.912 kb on - strand, within Echvi_0681 at 766.925 kb on + strand, within Echvi_0681 at 766.925 kb on + strand, within Echvi_0681 at 767.148 kb on + strand, within Echvi_0681 at 767.312 kb on + strand, within Echvi_0681 at 767.312 kb on + strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.313 kb on - strand, within Echvi_0681 at 767.316 kb on + strand, within Echvi_0681 at 767.401 kb on + strand, within Echvi_0681 at 767.411 kb on + strand, within Echvi_0681 at 767.411 kb on + strand, within Echvi_0681 at 767.436 kb on + strand, within Echvi_0681 at 767.436 kb on + strand, within Echvi_0681 at 767.436 kb on + strand, within Echvi_0681 at 767.437 kb on - strand, within Echvi_0681 at 767.437 kb on - strand, within Echvi_0681 at 767.437 kb on - strand, within Echvi_0681 at 767.437 kb on - strand, within Echvi_0681 at 767.437 kb on - strand, within Echvi_0681 at 767.460 kb on + strand, within Echvi_0681 at 767.486 kb on - strand, within Echvi_0681 at 767.601 kb on + strand, within Echvi_0681 at 767.601 kb on + strand, within Echvi_0681 at 767.602 kb on - strand, within Echvi_0681 at 767.613 kb on + strand, within Echvi_0681 at 767.613 kb on + strand, within Echvi_0681 at 767.693 kb on + strand, within Echvi_0681 at 767.693 kb on + strand, within Echvi_0681 at 767.757 kb on + strand, within Echvi_0681 at 767.859 kb on + strand, within Echvi_0681 at 767.919 kb on - strand, within Echvi_0681 at 767.943 kb on - strand, within Echvi_0681 at 768.034 kb on - strand, within Echvi_0681 at 768.052 kb on - strand, within Echvi_0681 at 768.208 kb on + strand, within Echvi_0681 at 768.283 kb on + strand, within Echvi_0681 at 768.283 kb on + strand, within Echvi_0681 at 768.284 kb on - strand, within Echvi_0681 at 768.293 kb on + strand, within Echvi_0681 at 768.378 kb on + strand, within Echvi_0681 at 768.403 kb on + strand, within Echvi_0681 at 768.403 kb on + strand, within Echvi_0681 at 768.403 kb on + strand, within Echvi_0681 at 768.404 kb on - strand, within Echvi_0681 at 768.672 kb on + strand at 768.672 kb on + strand at 768.672 kb on + strand at 768.673 kb on - strand at 768.673 kb on - strand at 768.675 kb on + strand at 768.675 kb on + strand at 768.676 kb on - strand at 768.693 kb on + strand at 768.715 kb on + strand at 768.716 kb on - strand at 768.719 kb on + strand at 768.754 kb on - strand at 768.798 kb on - strand at 768.798 kb on - strand at 768.799 kb on + strand at 768.800 kb on - strand at 768.866 kb on - strand at 768.955 kb on - strand, within Echvi_0682 at 768.955 kb on - strand, within Echvi_0682 at 768.955 kb on - strand, within Echvi_0682 at 768.955 kb on - strand, within Echvi_0682 at 768.959 kb on - strand, within Echvi_0682 at 768.959 kb on - strand, within Echvi_0682 at 768.986 kb on + strand, within Echvi_0682 at 768.986 kb on + strand, within Echvi_0682 at 768.987 kb on - strand, within Echvi_0682 at 768.987 kb on - strand, within Echvi_0682 at 769.072 kb on + strand, within Echvi_0682 at 769.072 kb on + strand, within Echvi_0682 at 769.072 kb on + strand, within Echvi_0682 at 769.072 kb on + strand, within Echvi_0682 at 769.073 kb on - strand, within Echvi_0682 at 769.189 kb on + strand, within Echvi_0682 at 769.190 kb on - strand, within Echvi_0682 at 769.190 kb on - strand, within Echvi_0682 at 769.282 kb on + strand, within Echvi_0682 at 769.328 kb on + strand, within Echvi_0682 at 769.328 kb on + strand, within Echvi_0682 at 769.335 kb on + strand, within Echvi_0682 at 769.336 kb on - strand, within Echvi_0682 at 769.336 kb on - strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.451 kb on + strand, within Echvi_0682 at 769.452 kb on - strand, within Echvi_0682 at 769.488 kb on - strand, within Echvi_0682 at 769.588 kb on + strand, within Echvi_0682 at 769.589 kb on - strand, within Echvi_0682
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 764,931 + Echvi_0680 0.30 -1.2 764,986 + Echvi_0680 0.35 +0.8 764,987 - Echvi_0680 0.35 -3.0 765,049 + Echvi_0680 0.40 -0.7 765,049 + Echvi_0680 0.40 -2.9 765,050 - Echvi_0680 0.41 -1.8 765,050 - Echvi_0680 0.41 +0.0 765,070 + Echvi_0680 0.42 -0.3 765,071 - Echvi_0680 0.42 -0.7 765,071 - Echvi_0680 0.42 +1.7 765,071 - Echvi_0680 0.42 -1.7 765,075 + Echvi_0680 0.43 +0.5 765,076 - Echvi_0680 0.43 -0.3 765,150 - Echvi_0680 0.50 -0.3 765,150 - Echvi_0680 0.50 -3.3 765,210 + Echvi_0680 0.55 +0.0 765,210 + Echvi_0680 0.55 +0.3 765,211 - Echvi_0680 0.55 +0.2 765,211 - Echvi_0680 0.55 +2.0 765,338 - Echvi_0680 0.67 -2.0 765,459 - Echvi_0680 0.78 -1.9 765,459 - Echvi_0680 0.78 +0.9 765,644 + -2.4 765,644 + +1.5 765,644 + +0.6 765,705 + -0.8 765,706 - -1.4 765,714 + -0.3 765,714 + -0.5 765,714 + -0.1 765,715 - -1.1 765,715 - +0.1 765,721 + -1.2 765,722 - -1.0 765,848 + +2.5 765,848 + -2.6 765,849 - +0.9 765,849 - -1.1 765,849 - +1.1 765,849 - -2.0 765,849 - -0.1 765,852 + -0.8 765,852 + +0.5 765,853 - -2.2 765,917 - -3.4 765,968 - -2.9 765,997 + -1.6 765,997 + -0.1 766,109 - Echvi_0681 0.14 -1.8 766,114 - Echvi_0681 0.14 -1.4 766,171 + Echvi_0681 0.16 -0.8 766,172 - Echvi_0681 0.16 +0.2 766,306 - Echvi_0681 0.20 -2.5 766,312 + Echvi_0681 0.20 +0.4 766,375 - Echvi_0681 0.22 +1.3 766,448 - Echvi_0681 0.25 -3.6 766,573 + Echvi_0681 0.29 -0.5 766,574 - Echvi_0681 0.29 -1.8 766,574 - Echvi_0681 0.29 -1.9 766,579 + Echvi_0681 0.29 -0.6 766,579 + Echvi_0681 0.29 -1.0 766,584 + Echvi_0681 0.29 -0.8 766,584 + Echvi_0681 0.29 -1.4 766,605 + Echvi_0681 0.30 -2.4 766,638 + Echvi_0681 0.31 -1.3 766,639 - Echvi_0681 0.31 -0.3 766,639 - Echvi_0681 0.31 +1.0 766,639 - Echvi_0681 0.31 +0.9 766,664 - Echvi_0681 0.32 +1.5 766,670 + Echvi_0681 0.32 -2.8 766,670 + Echvi_0681 0.32 -0.1 766,671 - Echvi_0681 0.32 +0.9 766,673 - Echvi_0681 0.32 +1.3 766,695 + Echvi_0681 0.33 -1.2 766,695 + Echvi_0681 0.33 -1.3 766,695 + Echvi_0681 0.33 +1.0 766,695 + +0.5 766,774 + Echvi_0681 0.35 -0.9 766,775 - Echvi_0681 0.35 -3.0 766,807 - Echvi_0681 0.36 -1.0 766,813 - Echvi_0681 0.37 +0.1 766,826 + Echvi_0681 0.37 -3.4 766,826 + Echvi_0681 0.37 -2.2 766,826 + Echvi_0681 0.37 +1.3 766,827 - Echvi_0681 0.37 -2.0 766,908 + Echvi_0681 0.40 +0.4 766,908 + Echvi_0681 0.40 +0.5 766,908 + Echvi_0681 0.40 -0.8 766,908 + Echvi_0681 0.40 +0.5 766,908 + Echvi_0681 0.40 -1.6 766,908 + Echvi_0681 0.40 +2.8 766,909 - Echvi_0681 0.40 -1.3 766,909 - Echvi_0681 0.40 -1.2 766,909 - Echvi_0681 0.40 -0.7 766,909 - Echvi_0681 0.40 -1.9 766,909 - Echvi_0681 0.40 +2.6 766,909 - Echvi_0681 0.40 -0.5 766,909 - Echvi_0681 0.40 -1.9 766,912 - Echvi_0681 0.40 +2.3 766,925 + Echvi_0681 0.40 -2.4 766,925 + Echvi_0681 0.40 -0.5 767,148 + Echvi_0681 0.47 -0.5 767,312 + Echvi_0681 0.53 -1.8 767,312 + Echvi_0681 0.53 -1.0 767,313 - Echvi_0681 0.53 +1.0 767,313 - Echvi_0681 0.53 -1.9 767,313 - Echvi_0681 0.53 +0.9 767,313 - Echvi_0681 0.53 +0.4 767,313 - Echvi_0681 0.53 -1.1 767,313 - Echvi_0681 0.53 -1.2 767,316 + Echvi_0681 0.53 -2.0 767,401 + Echvi_0681 0.56 -2.7 767,411 + Echvi_0681 0.56 +2.4 767,411 + Echvi_0681 0.56 -0.3 767,436 + Echvi_0681 0.57 -2.0 767,436 + Echvi_0681 0.57 -1.6 767,436 + Echvi_0681 0.57 -1.1 767,437 - Echvi_0681 0.57 +0.5 767,437 - Echvi_0681 0.57 -0.8 767,437 - Echvi_0681 0.57 +0.7 767,437 - Echvi_0681 0.57 +1.6 767,437 - Echvi_0681 0.57 -0.3 767,460 + Echvi_0681 0.58 +0.8 767,486 - Echvi_0681 0.58 +1.0 767,601 + Echvi_0681 0.62 -1.5 767,601 + Echvi_0681 0.62 -0.0 767,602 - Echvi_0681 0.62 +0.6 767,613 + Echvi_0681 0.63 -2.2 767,613 + Echvi_0681 0.63 +0.5 767,693 + Echvi_0681 0.65 +0.5 767,693 + Echvi_0681 0.65 +0.9 767,757 + Echvi_0681 0.67 -1.5 767,859 + Echvi_0681 0.71 -2.3 767,919 - Echvi_0681 0.73 +0.9 767,943 - Echvi_0681 0.73 -2.6 768,034 - Echvi_0681 0.76 +0.8 768,052 - Echvi_0681 0.77 -2.5 768,208 + Echvi_0681 0.82 +1.7 768,283 + Echvi_0681 0.84 +0.5 768,283 + Echvi_0681 0.84 -1.0 768,284 - Echvi_0681 0.85 +2.5 768,293 + Echvi_0681 0.85 +0.2 768,378 + Echvi_0681 0.88 -0.7 768,403 + Echvi_0681 0.88 +2.3 768,403 + Echvi_0681 0.88 -2.8 768,403 + Echvi_0681 0.88 +1.2 768,404 - Echvi_0681 0.88 +0.1 768,672 + +0.9 768,672 + +0.2 768,672 + -2.1 768,673 - +0.9 768,673 - +0.9 768,675 + -1.9 768,675 + -0.8 768,676 - +2.1 768,693 + -2.4 768,715 + +0.9 768,716 - -0.8 768,719 + -1.4 768,754 - -2.7 768,798 - +2.0 768,798 - -2.5 768,799 + -0.5 768,800 - -0.8 768,866 - +2.1 768,955 - Echvi_0682 0.15 -1.5 768,955 - Echvi_0682 0.15 +0.4 768,955 - Echvi_0682 0.15 -2.0 768,955 - Echvi_0682 0.15 +2.1 768,959 - Echvi_0682 0.15 -2.4 768,959 - Echvi_0682 0.15 +2.4 768,986 + Echvi_0682 0.17 +0.6 768,986 + Echvi_0682 0.17 +1.9 768,987 - Echvi_0682 0.18 +2.3 768,987 - Echvi_0682 0.18 +0.5 769,072 + Echvi_0682 0.24 -2.0 769,072 + Echvi_0682 0.24 +0.2 769,072 + Echvi_0682 0.24 +1.1 769,072 + Echvi_0682 0.24 +0.2 769,073 - Echvi_0682 0.24 +1.6 769,189 + Echvi_0682 0.33 -2.7 769,190 - Echvi_0682 0.33 +1.1 769,190 - Echvi_0682 0.33 +0.1 769,282 + Echvi_0682 0.40 +0.5 769,328 + Echvi_0682 0.43 -0.8 769,328 + Echvi_0682 0.43 -1.8 769,335 + Echvi_0682 0.44 +1.7 769,336 - Echvi_0682 0.44 +1.2 769,336 - Echvi_0682 0.44 -2.9 769,451 + Echvi_0682 0.52 +0.6 769,451 + Echvi_0682 0.52 -2.6 769,451 + Echvi_0682 0.52 +1.2 769,451 + Echvi_0682 0.52 +1.2 769,451 + Echvi_0682 0.52 +1.0 769,452 - Echvi_0682 0.53 -1.9 769,488 - Echvi_0682 0.55 -1.6 769,588 + Echvi_0682 0.63 -0.8 769,589 - Echvi_0682 0.63 -1.7
Or see this region's nucleotide sequence