Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0657

Experiment: m.b. D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0655 and Echvi_0656 are separated by 74 nucleotidesEchvi_0656 and Echvi_0657 are separated by 10 nucleotidesEchvi_0657 and Echvi_0658 are separated by 215 nucleotidesEchvi_0658 and Echvi_0659 overlap by 17 nucleotides Echvi_0655: Echvi_0655 - hypothetical protein, at 739,980 to 740,771 _0655 Echvi_0656: Echvi_0656 - Predicted sugar kinase, at 740,846 to 741,721 _0656 Echvi_0657: Echvi_0657 - hypothetical protein, at 741,732 to 742,397 _0657 Echvi_0658: Echvi_0658 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 742,613 to 743,203 _0658 Echvi_0659: Echvi_0659 - Uncharacterized membrane protein, required for colicin V production, at 743,187 to 743,732 _0659 Position (kb) 741 742 743Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 740.786 kb on + strandat 740.820 kb on - strandat 740.836 kb on + strandat 740.837 kb on - strandat 741.733 kb on + strandat 741.733 kb on + strandat 741.734 kb on - strandat 741.738 kb on - strandat 741.802 kb on + strand, within Echvi_0657at 741.802 kb on + strand, within Echvi_0657at 741.802 kb on + strand, within Echvi_0657at 741.820 kb on + strand, within Echvi_0657at 741.876 kb on + strand, within Echvi_0657at 741.876 kb on + strand, within Echvi_0657at 741.877 kb on - strand, within Echvi_0657at 741.888 kb on + strand, within Echvi_0657at 741.954 kb on + strand, within Echvi_0657at 741.955 kb on - strand, within Echvi_0657at 741.982 kb on + strand, within Echvi_0657at 742.087 kb on + strand, within Echvi_0657at 742.091 kb on + strand, within Echvi_0657at 742.091 kb on + strand, within Echvi_0657at 742.104 kb on + strand, within Echvi_0657at 742.105 kb on - strand, within Echvi_0657at 742.118 kb on + strand, within Echvi_0657at 742.118 kb on + strand, within Echvi_0657at 742.156 kb on + strand, within Echvi_0657at 742.156 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.160 kb on + strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.161 kb on - strand, within Echvi_0657at 742.240 kb on + strand, within Echvi_0657at 742.240 kb on + strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.241 kb on - strand, within Echvi_0657at 742.296 kb on + strand, within Echvi_0657at 742.296 kb on + strand, within Echvi_0657at 742.357 kb on - strandat 742.388 kb on - strandat 742.411 kb on + strandat 742.412 kb on - strandat 742.418 kb on + strandat 742.485 kb on + strandat 742.523 kb on - strandat 742.537 kb on - strandat 742.568 kb on - strandat 742.572 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.598 kb on + strandat 742.599 kb on - strandat 742.602 kb on + strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.603 kb on - strandat 742.647 kb on + strandat 742.683 kb on + strand, within Echvi_0658at 742.684 kb on - strand, within Echvi_0658at 742.695 kb on + strand, within Echvi_0658at 742.695 kb on + strand, within Echvi_0658at 742.696 kb on - strand, within Echvi_0658at 742.742 kb on + strand, within Echvi_0658at 742.772 kb on - strand, within Echvi_0658at 742.773 kb on + strand, within Echvi_0658at 742.773 kb on + strand, within Echvi_0658at 742.807 kb on + strand, within Echvi_0658at 742.807 kb on + strand, within Echvi_0658at 742.894 kb on - strand, within Echvi_0658at 742.894 kb on - strand, within Echvi_0658at 743.004 kb on + strand, within Echvi_0658at 743.004 kb on + strand, within Echvi_0658at 743.063 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.165 kb on - strandat 743.192 kb on + strandat 743.192 kb on + strandat 743.192 kb on + strandat 743.239 kb on - strandat 743.261 kb on + strand, within Echvi_0659at 743.289 kb on - strand, within Echvi_0659at 743.394 kb on - strand, within Echvi_0659at 743.394 kb on - strand, within Echvi_0659

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
remove
740,786 + -1.1
740,820 - -2.0
740,836 + +1.6
740,837 - -1.1
741,733 + +0.1
741,733 + -0.6
741,734 - +0.7
741,738 - +0.4
741,802 + Echvi_0657 0.11 -1.8
741,802 + Echvi_0657 0.11 -0.3
741,802 + Echvi_0657 0.11 -1.1
741,820 + Echvi_0657 0.13 -0.8
741,876 + Echvi_0657 0.22 -4.0
741,876 + Echvi_0657 0.22 +2.5
741,877 - Echvi_0657 0.22 -1.0
741,888 + Echvi_0657 0.23 -1.3
741,954 + Echvi_0657 0.33 -2.6
741,955 - Echvi_0657 0.33 +1.2
741,982 + Echvi_0657 0.38 -0.4
742,087 + Echvi_0657 0.53 -1.8
742,091 + Echvi_0657 0.54 -2.0
742,091 + Echvi_0657 0.54 -0.9
742,104 + Echvi_0657 0.56 -0.1
742,105 - Echvi_0657 0.56 +1.9
742,118 + Echvi_0657 0.58 +0.5
742,118 + Echvi_0657 0.58 +0.8
742,156 + Echvi_0657 0.64 +1.1
742,156 + Echvi_0657 0.64 -2.0
742,160 + Echvi_0657 0.64 +0.4
742,160 + Echvi_0657 0.64 -1.9
742,160 + Echvi_0657 0.64 +0.4
742,160 + Echvi_0657 0.64 -0.1
742,160 + Echvi_0657 0.64 +2.8
742,160 + Echvi_0657 0.64 +2.1
742,160 + Echvi_0657 0.64 -0.9
742,161 - Echvi_0657 0.64 +0.8
742,161 - Echvi_0657 0.64 +1.2
742,161 - Echvi_0657 0.64 +0.2
742,240 + Echvi_0657 0.76 -4.1
742,240 + Echvi_0657 0.76 +1.0
742,241 - Echvi_0657 0.76 +0.5
742,241 - Echvi_0657 0.76 -2.4
742,241 - Echvi_0657 0.76 +1.2
742,296 + Echvi_0657 0.85 -0.9
742,296 + Echvi_0657 0.85 -0.8
742,357 - -1.3
742,388 - -1.7
742,411 + -1.6
742,412 - +1.6
742,418 + -1.3
742,485 + +0.8
742,523 - +3.2
742,537 - +2.8
742,568 - -1.6
742,572 + +3.8
742,598 + +0.5
742,598 + -4.0
742,598 + -0.5
742,598 + -2.4
742,599 - +0.9
742,602 + -0.4
742,603 - -1.4
742,603 - -0.5
742,603 - -2.1
742,603 - +2.5
742,647 + -3.2
742,683 + Echvi_0658 0.12 +2.3
742,684 - Echvi_0658 0.12 -0.5
742,695 + Echvi_0658 0.14 -1.0
742,695 + Echvi_0658 0.14 +0.0
742,696 - Echvi_0658 0.14 -0.5
742,742 + Echvi_0658 0.22 +0.2
742,772 - Echvi_0658 0.27 +1.8
742,773 + Echvi_0658 0.27 +0.8
742,773 + Echvi_0658 0.27 -0.7
742,807 + Echvi_0658 0.33 -0.5
742,807 + Echvi_0658 0.33 +1.3
742,894 - Echvi_0658 0.48 -0.5
742,894 - Echvi_0658 0.48 -3.3
743,004 + Echvi_0658 0.66 +0.7
743,004 + Echvi_0658 0.66 +0.5
743,063 + Echvi_0658 0.76 -0.6
743,122 + Echvi_0658 0.86 -2.0
743,122 + Echvi_0658 0.86 -0.7
743,122 + Echvi_0658 0.86 +0.6
743,122 + Echvi_0658 0.86 -0.7
743,165 - +0.8
743,192 + -2.7
743,192 + +3.5
743,192 + -2.6
743,239 - +0.7
743,261 + Echvi_0659 0.14 -0.1
743,289 - Echvi_0659 0.19 -0.8
743,394 - Echvi_0659 0.38 -3.6
743,394 - Echvi_0659 0.38 +1.6

Or see this region's nucleotide sequence