Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0641 and Echvi_0642 are separated by 653 nucleotides Echvi_0642 and Echvi_0643 are separated by 27 nucleotides
Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405
_0641
Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153
_0642
Echvi_0643: Echvi_0643 - 1-aminocyclopropane-1-carboxylate deaminase, at 727,181 to 728,110
_0643
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 725.176 kb on - strand, within Echvi_0641 at 725.658 kb on - strand at 725.658 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.682 kb on - strand at 725.688 kb on - strand at 725.698 kb on + strand at 725.699 kb on - strand at 725.708 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.773 kb on + strand at 725.774 kb on - strand at 725.774 kb on - strand at 725.776 kb on + strand at 725.777 kb on - strand at 725.808 kb on + strand at 725.992 kb on - strand at 725.999 kb on - strand at 726.078 kb on + strand at 726.208 kb on + strand, within Echvi_0642 at 726.209 kb on - strand, within Echvi_0642 at 726.235 kb on - strand, within Echvi_0642 at 726.309 kb on + strand, within Echvi_0642 at 726.375 kb on + strand at 726.376 kb on - strand at 726.376 kb on - strand, within Echvi_0642 at 726.418 kb on + strand, within Echvi_0642 at 726.440 kb on + strand, within Echvi_0642 at 726.532 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.534 kb on + strand, within Echvi_0642 at 726.735 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.827 kb on + strand, within Echvi_0642 at 726.828 kb on - strand, within Echvi_0642 at 726.854 kb on + strand, within Echvi_0642 at 726.889 kb on + strand, within Echvi_0642 at 726.923 kb on - strand, within Echvi_0642 at 727.031 kb on + strand, within Echvi_0642 at 727.032 kb on - strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.036 kb on + strand, within Echvi_0642 at 727.047 kb on + strand at 727.146 kb on - strand at 727.185 kb on + strand at 727.185 kb on + strand at 727.317 kb on - strand, within Echvi_0643 at 727.325 kb on - strand, within Echvi_0643 at 727.328 kb on + strand, within Echvi_0643 at 727.368 kb on + strand, within Echvi_0643 at 727.399 kb on + strand, within Echvi_0643 at 727.400 kb on - strand, within Echvi_0643 at 727.400 kb on - strand, within Echvi_0643 at 727.604 kb on + strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.649 kb on - strand, within Echvi_0643 at 727.691 kb on - strand, within Echvi_0643 at 727.691 kb on - strand, within Echvi_0643 at 727.975 kb on - strand, within Echvi_0643 at 727.975 kb on - strand, within Echvi_0643 at 727.997 kb on - strand, within Echvi_0643 at 727.999 kb on + strand, within Echvi_0643 at 727.999 kb on + strand, within Echvi_0643 at 728.064 kb on + strand at 728.064 kb on + strand at 728.065 kb on - strand at 728.065 kb on - strand at 728.065 kb on - strand at 728.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 725,176 - Echvi_0641 0.81 +1.3 725,658 - -0.2 725,658 - -2.9 725,667 + -2.8 725,667 + -1.0 725,668 - -0.5 725,682 - +0.4 725,688 - -0.7 725,698 + -0.5 725,699 - +1.0 725,708 + +0.1 725,773 + -0.4 725,773 + -2.3 725,773 + +0.3 725,774 - +2.8 725,774 - +0.9 725,776 + +0.1 725,777 - +1.0 725,808 + -1.8 725,992 - +2.4 725,999 - -1.0 726,078 + -1.3 726,208 + Echvi_0642 0.14 +0.9 726,209 - Echvi_0642 0.14 -1.8 726,235 - Echvi_0642 0.16 -2.4 726,309 + Echvi_0642 0.23 -1.0 726,375 + +1.5 726,376 - +0.5 726,376 - Echvi_0642 0.29 +0.5 726,418 + Echvi_0642 0.33 +0.2 726,440 + Echvi_0642 0.35 -0.1 726,532 + Echvi_0642 0.43 -1.8 726,534 + Echvi_0642 0.43 +0.2 726,534 + Echvi_0642 0.43 -3.1 726,534 + Echvi_0642 0.43 -1.7 726,534 + Echvi_0642 0.43 -2.3 726,534 + Echvi_0642 0.43 -1.3 726,735 + Echvi_0642 0.62 -0.2 726,827 + Echvi_0642 0.70 -0.1 726,827 + Echvi_0642 0.70 -0.3 726,827 + Echvi_0642 0.70 -2.4 726,828 - Echvi_0642 0.70 -0.7 726,854 + Echvi_0642 0.73 -1.4 726,889 + Echvi_0642 0.76 +2.5 726,923 - Echvi_0642 0.79 -0.7 727,031 + Echvi_0642 0.89 -1.2 727,032 - Echvi_0642 0.89 -1.6 727,036 + Echvi_0642 0.89 +0.9 727,036 + Echvi_0642 0.89 -1.5 727,036 + Echvi_0642 0.89 -2.1 727,047 + -0.7 727,146 - +2.1 727,185 + +1.5 727,185 + -0.2 727,317 - Echvi_0643 0.15 +1.7 727,325 - Echvi_0643 0.15 -0.6 727,328 + Echvi_0643 0.16 -1.4 727,368 + Echvi_0643 0.20 +1.8 727,399 + Echvi_0643 0.23 -1.8 727,400 - Echvi_0643 0.24 +0.2 727,400 - Echvi_0643 0.24 +1.8 727,604 + Echvi_0643 0.45 -0.3 727,649 - Echvi_0643 0.50 +3.0 727,649 - Echvi_0643 0.50 +1.7 727,649 - Echvi_0643 0.50 +0.4 727,691 - Echvi_0643 0.55 -0.3 727,691 - Echvi_0643 0.55 -0.7 727,975 - Echvi_0643 0.85 +0.2 727,975 - Echvi_0643 0.85 +0.5 727,997 - Echvi_0643 0.88 -0.8 727,999 + Echvi_0643 0.88 +1.0 727,999 + Echvi_0643 0.88 +1.5 728,064 + +0.2 728,064 + +0.7 728,065 - +0.3 728,065 - +0.4 728,065 - -2.1 728,113 + +0.8
Or see this region's nucleotide sequence