Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0627 and Echvi_0628 are separated by 50 nucleotides Echvi_0628 and Echvi_0629 are separated by 25 nucleotides
Echvi_0627: Echvi_0627 - hypothetical protein, at 704,731 to 706,461
_0627
Echvi_0628: Echvi_0628 - putative oxygen-independent coproporphyrinogen III oxidase, at 706,512 to 707,636
_0628
Echvi_0629: Echvi_0629 - Protein of unknown function (DUF721)., at 707,662 to 707,976
_0629
Position (kb) 706
707
708 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 705.529 kb on + strand, within Echvi_0627 at 705.530 kb on - strand, within Echvi_0627 at 705.530 kb on - strand, within Echvi_0627 at 705.565 kb on + strand, within Echvi_0627 at 705.584 kb on + strand, within Echvi_0627 at 705.585 kb on - strand, within Echvi_0627 at 705.614 kb on + strand, within Echvi_0627 at 705.615 kb on - strand, within Echvi_0627 at 705.641 kb on + strand, within Echvi_0627 at 705.641 kb on + strand, within Echvi_0627 at 705.642 kb on - strand, within Echvi_0627 at 705.678 kb on + strand, within Echvi_0627 at 705.711 kb on + strand, within Echvi_0627 at 705.714 kb on + strand, within Echvi_0627 at 705.714 kb on + strand, within Echvi_0627 at 705.715 kb on - strand, within Echvi_0627 at 705.755 kb on + strand, within Echvi_0627 at 705.756 kb on - strand, within Echvi_0627 at 705.808 kb on - strand, within Echvi_0627 at 705.809 kb on + strand, within Echvi_0627 at 705.810 kb on - strand, within Echvi_0627 at 705.810 kb on - strand, within Echvi_0627 at 705.810 kb on - strand, within Echvi_0627 at 705.810 kb on - strand, within Echvi_0627 at 705.810 kb on - strand, within Echvi_0627 at 705.831 kb on + strand, within Echvi_0627 at 705.831 kb on + strand, within Echvi_0627 at 705.831 kb on + strand, within Echvi_0627 at 705.832 kb on - strand, within Echvi_0627 at 705.832 kb on - strand, within Echvi_0627 at 705.832 kb on - strand, within Echvi_0627 at 705.967 kb on + strand, within Echvi_0627 at 706.015 kb on - strand, within Echvi_0627 at 706.015 kb on - strand, within Echvi_0627 at 706.079 kb on - strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.087 kb on + strand, within Echvi_0627 at 706.088 kb on - strand, within Echvi_0627 at 706.228 kb on - strand, within Echvi_0627 at 706.228 kb on - strand, within Echvi_0627 at 706.344 kb on + strand at 706.388 kb on + strand at 706.388 kb on + strand at 706.388 kb on + strand at 706.414 kb on - strand at 706.441 kb on + strand at 706.441 kb on + strand at 706.441 kb on + strand at 706.444 kb on - strand at 706.444 kb on - strand at 706.522 kb on + strand at 706.522 kb on + strand at 706.522 kb on + strand at 706.522 kb on + strand at 706.522 kb on + strand at 706.522 kb on + strand at 706.523 kb on - strand at 706.523 kb on - strand at 706.523 kb on - strand at 706.523 kb on - strand at 706.524 kb on + strand at 706.524 kb on + strand at 706.525 kb on - strand at 706.525 kb on - strand at 706.525 kb on - strand at 706.526 kb on + strand at 706.526 kb on + strand at 706.527 kb on - strand at 706.532 kb on + strand at 706.647 kb on + strand, within Echvi_0628 at 706.819 kb on + strand, within Echvi_0628 at 706.819 kb on + strand, within Echvi_0628 at 706.820 kb on - strand, within Echvi_0628 at 706.820 kb on - strand, within Echvi_0628 at 706.885 kb on + strand, within Echvi_0628 at 706.896 kb on + strand, within Echvi_0628 at 706.899 kb on - strand, within Echvi_0628 at 706.987 kb on - strand, within Echvi_0628 at 707.070 kb on + strand, within Echvi_0628 at 707.070 kb on + strand, within Echvi_0628 at 707.083 kb on + strand, within Echvi_0628 at 707.083 kb on + strand, within Echvi_0628 at 707.083 kb on + strand, within Echvi_0628 at 707.084 kb on - strand, within Echvi_0628 at 707.084 kb on - strand, within Echvi_0628 at 707.199 kb on + strand, within Echvi_0628 at 707.262 kb on + strand, within Echvi_0628 at 707.262 kb on + strand, within Echvi_0628 at 707.273 kb on + strand, within Echvi_0628 at 707.273 kb on + strand, within Echvi_0628 at 707.274 kb on - strand, within Echvi_0628 at 707.274 kb on - strand, within Echvi_0628 at 707.274 kb on - strand, within Echvi_0628 at 707.356 kb on - strand, within Echvi_0628 at 707.438 kb on + strand, within Echvi_0628 at 707.438 kb on + strand, within Echvi_0628 at 707.438 kb on + strand, within Echvi_0628 at 707.479 kb on + strand, within Echvi_0628 at 707.497 kb on + strand, within Echvi_0628 at 707.498 kb on - strand, within Echvi_0628 at 707.510 kb on + strand, within Echvi_0628 at 707.610 kb on + strand at 707.610 kb on + strand at 707.610 kb on + strand at 707.610 kb on + strand at 707.610 kb on + strand at 707.611 kb on - strand at 707.611 kb on - strand at 707.612 kb on + strand at 707.612 kb on + strand at 707.612 kb on + strand at 707.612 kb on + strand at 707.613 kb on - strand at 707.613 kb on - strand at 707.641 kb on + strand at 707.641 kb on + strand at 707.641 kb on + strand at 707.649 kb on - strand at 707.977 kb on + strand at 707.978 kb on - strand at 708.185 kb on + strand at 708.186 kb on - strand at 708.312 kb on + strand at 708.312 kb on + strand at 708.320 kb on - strand at 708.320 kb on - strand at 708.386 kb on + strand at 708.405 kb on - strand at 708.500 kb on + strand at 708.506 kb on + strand at 708.593 kb on - strand at 708.593 kb on - strand at 708.596 kb on + strand at 708.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 705,529 + Echvi_0627 0.46 +1.5 705,530 - Echvi_0627 0.46 -3.2 705,530 - Echvi_0627 0.46 -0.6 705,565 + Echvi_0627 0.48 +2.6 705,584 + Echvi_0627 0.49 +2.3 705,585 - Echvi_0627 0.49 -0.1 705,614 + Echvi_0627 0.51 +2.9 705,615 - Echvi_0627 0.51 -1.5 705,641 + Echvi_0627 0.53 -1.7 705,641 + Echvi_0627 0.53 -1.0 705,642 - Echvi_0627 0.53 +1.1 705,678 + Echvi_0627 0.55 +0.6 705,711 + Echvi_0627 0.57 -2.1 705,714 + Echvi_0627 0.57 +0.2 705,714 + Echvi_0627 0.57 +1.5 705,715 - Echvi_0627 0.57 -2.3 705,755 + Echvi_0627 0.59 -2.5 705,756 - Echvi_0627 0.59 -2.2 705,808 - Echvi_0627 0.62 -0.8 705,809 + Echvi_0627 0.62 -1.7 705,810 - Echvi_0627 0.62 -1.7 705,810 - Echvi_0627 0.62 -0.1 705,810 - Echvi_0627 0.62 -1.0 705,810 - Echvi_0627 0.62 +0.9 705,810 - Echvi_0627 0.62 +0.5 705,831 + Echvi_0627 0.64 -0.5 705,831 + Echvi_0627 0.64 +0.7 705,831 + Echvi_0627 0.64 +1.6 705,832 - Echvi_0627 0.64 +0.5 705,832 - Echvi_0627 0.64 +0.2 705,832 - Echvi_0627 0.64 -2.4 705,967 + Echvi_0627 0.71 +0.4 706,015 - Echvi_0627 0.74 +1.6 706,015 - Echvi_0627 0.74 -0.3 706,079 - Echvi_0627 0.78 -0.1 706,087 + Echvi_0627 0.78 -0.3 706,087 + Echvi_0627 0.78 -0.6 706,087 + Echvi_0627 0.78 +0.9 706,087 + Echvi_0627 0.78 -1.4 706,087 + Echvi_0627 0.78 +0.8 706,087 + Echvi_0627 0.78 -1.3 706,088 - Echvi_0627 0.78 -1.0 706,228 - Echvi_0627 0.86 -0.7 706,228 - Echvi_0627 0.86 +1.1 706,344 + -1.5 706,388 + +0.1 706,388 + -1.3 706,388 + -1.0 706,414 - +1.9 706,441 + +0.6 706,441 + -3.1 706,441 + +0.7 706,444 - +0.2 706,444 - +1.3 706,522 + +1.3 706,522 + -0.7 706,522 + -1.9 706,522 + -1.8 706,522 + -0.1 706,522 + +0.3 706,523 - -0.1 706,523 - +0.4 706,523 - -1.4 706,523 - -2.0 706,524 + -2.5 706,524 + -2.4 706,525 - +0.9 706,525 - +1.2 706,525 - -0.7 706,526 + -0.1 706,526 + -3.1 706,527 - -3.3 706,532 + -1.0 706,647 + Echvi_0628 0.12 -1.1 706,819 + Echvi_0628 0.27 -0.5 706,819 + Echvi_0628 0.27 -1.1 706,820 - Echvi_0628 0.27 +1.5 706,820 - Echvi_0628 0.27 -2.0 706,885 + Echvi_0628 0.33 -2.4 706,896 + Echvi_0628 0.34 -2.4 706,899 - Echvi_0628 0.34 +2.5 706,987 - Echvi_0628 0.42 -0.2 707,070 + Echvi_0628 0.50 +0.2 707,070 + Echvi_0628 0.50 +0.3 707,083 + Echvi_0628 0.51 +1.8 707,083 + Echvi_0628 0.51 +0.3 707,083 + Echvi_0628 0.51 -2.6 707,084 - Echvi_0628 0.51 -1.3 707,084 - Echvi_0628 0.51 -0.6 707,199 + Echvi_0628 0.61 +0.5 707,262 + Echvi_0628 0.67 -0.9 707,262 + Echvi_0628 0.67 -2.8 707,273 + Echvi_0628 0.68 -1.3 707,273 + Echvi_0628 0.68 -0.2 707,274 - Echvi_0628 0.68 -2.9 707,274 - Echvi_0628 0.68 -1.1 707,274 - Echvi_0628 0.68 -1.9 707,356 - Echvi_0628 0.75 -2.5 707,438 + Echvi_0628 0.82 +0.7 707,438 + Echvi_0628 0.82 -0.9 707,438 + Echvi_0628 0.82 -0.2 707,479 + Echvi_0628 0.86 +1.0 707,497 + Echvi_0628 0.88 +1.2 707,498 - Echvi_0628 0.88 +0.3 707,510 + Echvi_0628 0.89 -1.1 707,610 + -0.5 707,610 + +0.2 707,610 + -3.9 707,610 + -3.1 707,610 + -1.2 707,611 - +1.5 707,611 - -1.3 707,612 + -2.3 707,612 + +0.2 707,612 + -4.0 707,612 + -1.3 707,613 - +1.6 707,613 - +2.2 707,641 + +0.5 707,641 + +0.7 707,641 + -2.1 707,649 - +0.6 707,977 + -0.3 707,978 - +0.6 708,185 + -1.1 708,186 - -2.9 708,312 + -0.3 708,312 + -2.3 708,320 - -1.8 708,320 - +0.3 708,386 + -0.8 708,405 - -1.4 708,500 + +1.4 708,506 + -1.0 708,593 - +1.2 708,593 - -0.5 708,596 + -1.1 708,619 - +0.6
Or see this region's nucleotide sequence