Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0568 and Echvi_0569 are separated by 50 nucleotides Echvi_0569 and Echvi_0570 are separated by 86 nucleotides Echvi_0570 and Echvi_0571 overlap by 38 nucleotides Echvi_0571 and Echvi_0572 are separated by 23 nucleotides
Echvi_0568: Echvi_0568 - hypothetical protein, at 647,633 to 647,890
_0568
Echvi_0569: Echvi_0569 - hypothetical protein, at 647,941 to 648,777
_0569
Echvi_0570: Echvi_0570 - hypothetical protein, at 648,864 to 650,018
_0570
Echvi_0571: Echvi_0571 - hypothetical protein, at 649,981 to 650,226
_0571
Echvi_0572: Echvi_0572 - hypothetical protein, at 650,250 to 651,383
_0572
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 647.865 kb on + strand at 647.902 kb on - strand at 647.902 kb on - strand at 648.016 kb on - strand at 648.116 kb on - strand, within Echvi_0569 at 648.250 kb on - strand, within Echvi_0569 at 648.261 kb on - strand, within Echvi_0569 at 648.299 kb on - strand, within Echvi_0569 at 648.318 kb on + strand, within Echvi_0569 at 648.319 kb on - strand, within Echvi_0569 at 648.319 kb on - strand, within Echvi_0569 at 648.320 kb on + strand, within Echvi_0569 at 648.321 kb on - strand, within Echvi_0569 at 648.321 kb on - strand, within Echvi_0569 at 648.377 kb on + strand, within Echvi_0569 at 648.377 kb on + strand, within Echvi_0569 at 648.383 kb on + strand, within Echvi_0569 at 648.384 kb on - strand, within Echvi_0569 at 648.384 kb on - strand, within Echvi_0569 at 648.479 kb on - strand, within Echvi_0569 at 648.583 kb on - strand, within Echvi_0569 at 648.605 kb on + strand, within Echvi_0569 at 648.605 kb on + strand, within Echvi_0569 at 648.638 kb on + strand, within Echvi_0569 at 648.654 kb on - strand, within Echvi_0569 at 648.654 kb on - strand, within Echvi_0569 at 648.654 kb on - strand, within Echvi_0569 at 648.726 kb on + strand at 648.767 kb on - strand at 648.777 kb on + strand at 648.792 kb on + strand at 648.796 kb on + strand at 648.797 kb on - strand at 648.806 kb on + strand at 648.834 kb on + strand at 648.834 kb on + strand at 648.834 kb on + strand at 648.834 kb on + strand at 648.834 kb on + strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.835 kb on - strand at 648.842 kb on + strand at 648.889 kb on + strand at 648.890 kb on - strand at 648.890 kb on - strand at 648.935 kb on + strand at 648.935 kb on + strand at 648.936 kb on - strand at 648.944 kb on + strand at 648.954 kb on + strand at 648.954 kb on + strand at 648.954 kb on + strand at 648.955 kb on - strand at 648.955 kb on - strand at 648.968 kb on + strand at 648.969 kb on - strand at 648.969 kb on - strand at 649.070 kb on + strand, within Echvi_0570 at 649.095 kb on + strand, within Echvi_0570 at 649.105 kb on - strand, within Echvi_0570 at 649.105 kb on - strand, within Echvi_0570 at 649.141 kb on + strand, within Echvi_0570 at 649.142 kb on - strand, within Echvi_0570 at 649.195 kb on + strand, within Echvi_0570 at 649.196 kb on - strand, within Echvi_0570 at 649.268 kb on + strand, within Echvi_0570 at 649.272 kb on + strand, within Echvi_0570 at 649.288 kb on - strand, within Echvi_0570 at 649.319 kb on - strand, within Echvi_0570 at 649.324 kb on + strand, within Echvi_0570 at 649.324 kb on + strand, within Echvi_0570 at 649.324 kb on + strand, within Echvi_0570 at 649.324 kb on + strand, within Echvi_0570 at 649.324 kb on + strand, within Echvi_0570 at 649.325 kb on - strand, within Echvi_0570 at 649.325 kb on - strand, within Echvi_0570 at 649.325 kb on - strand, within Echvi_0570 at 649.325 kb on - strand, within Echvi_0570 at 649.331 kb on + strand, within Echvi_0570 at 649.332 kb on - strand, within Echvi_0570 at 649.332 kb on - strand, within Echvi_0570 at 649.458 kb on - strand, within Echvi_0570 at 649.521 kb on - strand, within Echvi_0570 at 649.571 kb on - strand, within Echvi_0570 at 649.609 kb on + strand, within Echvi_0570 at 649.613 kb on + strand, within Echvi_0570 at 649.613 kb on + strand, within Echvi_0570 at 649.614 kb on - strand, within Echvi_0570 at 649.614 kb on - strand, within Echvi_0570 at 649.616 kb on + strand, within Echvi_0570 at 649.712 kb on + strand, within Echvi_0570 at 649.712 kb on + strand, within Echvi_0570 at 649.768 kb on - strand, within Echvi_0570 at 649.769 kb on + strand, within Echvi_0570 at 649.769 kb on + strand, within Echvi_0570 at 649.770 kb on - strand, within Echvi_0570 at 649.770 kb on - strand, within Echvi_0570 at 649.916 kb on + strand at 649.916 kb on + strand at 649.916 kb on + strand at 649.917 kb on - strand at 649.948 kb on - strand at 650.004 kb on + strand at 650.005 kb on - strand at 650.028 kb on + strand, within Echvi_0571 at 650.028 kb on + strand, within Echvi_0571 at 650.029 kb on - strand, within Echvi_0571 at 650.029 kb on - strand, within Echvi_0571 at 650.032 kb on - strand, within Echvi_0571 at 650.039 kb on + strand, within Echvi_0571 at 650.039 kb on + strand, within Echvi_0571 at 650.039 kb on + strand, within Echvi_0571 at 650.039 kb on + strand, within Echvi_0571 at 650.040 kb on - strand, within Echvi_0571 at 650.040 kb on - strand, within Echvi_0571 at 650.043 kb on + strand, within Echvi_0571 at 650.043 kb on + strand, within Echvi_0571 at 650.043 kb on + strand, within Echvi_0571 at 650.043 kb on + strand, within Echvi_0571 at 650.044 kb on - strand, within Echvi_0571 at 650.044 kb on - strand, within Echvi_0571 at 650.044 kb on - strand, within Echvi_0571 at 650.044 kb on - strand, within Echvi_0571 at 650.044 kb on - strand, within Echvi_0571 at 650.045 kb on + strand, within Echvi_0571 at 650.046 kb on - strand, within Echvi_0571 at 650.066 kb on - strand, within Echvi_0571 at 650.094 kb on + strand, within Echvi_0571 at 650.095 kb on - strand, within Echvi_0571 at 650.099 kb on - strand, within Echvi_0571 at 650.110 kb on + strand, within Echvi_0571 at 650.173 kb on - strand, within Echvi_0571 at 650.173 kb on - strand, within Echvi_0571 at 650.195 kb on - strand, within Echvi_0571 at 650.195 kb on - strand, within Echvi_0571 at 650.228 kb on + strand at 650.228 kb on + strand at 650.229 kb on - strand at 650.240 kb on + strand at 650.262 kb on + strand at 650.263 kb on - strand at 650.263 kb on - strand at 650.275 kb on + strand at 650.275 kb on + strand at 650.275 kb on + strand at 650.276 kb on - strand at 650.276 kb on - strand at 650.276 kb on - strand at 650.279 kb on - strand at 650.279 kb on - strand at 650.279 kb on - strand at 650.280 kb on + strand at 650.400 kb on + strand, within Echvi_0572 at 650.401 kb on - strand, within Echvi_0572 at 650.401 kb on - strand, within Echvi_0572 at 650.451 kb on - strand, within Echvi_0572 at 650.451 kb on - strand, within Echvi_0572 at 650.454 kb on + strand, within Echvi_0572 at 650.485 kb on + strand, within Echvi_0572 at 650.485 kb on + strand, within Echvi_0572 at 650.490 kb on - strand, within Echvi_0572 at 650.512 kb on + strand, within Echvi_0572 at 650.515 kb on + strand, within Echvi_0572 at 650.515 kb on + strand, within Echvi_0572 at 650.515 kb on + strand, within Echvi_0572 at 650.520 kb on + strand, within Echvi_0572 at 650.520 kb on + strand, within Echvi_0572 at 650.520 kb on + strand, within Echvi_0572 at 650.520 kb on + strand, within Echvi_0572 at 650.520 kb on + strand, within Echvi_0572 at 650.521 kb on - strand, within Echvi_0572 at 650.521 kb on - strand, within Echvi_0572 at 650.521 kb on - strand, within Echvi_0572 at 650.553 kb on + strand, within Echvi_0572 at 650.554 kb on - strand, within Echvi_0572 at 650.554 kb on - strand, within Echvi_0572 at 650.578 kb on + strand, within Echvi_0572 at 650.578 kb on + strand, within Echvi_0572 at 650.579 kb on - strand, within Echvi_0572 at 650.579 kb on - strand, within Echvi_0572 at 650.579 kb on - strand, within Echvi_0572 at 650.586 kb on - strand, within Echvi_0572 at 650.671 kb on - strand, within Echvi_0572 at 650.671 kb on - strand, within Echvi_0572 at 650.727 kb on - strand, within Echvi_0572 at 650.727 kb on - strand, within Echvi_0572 at 650.727 kb on - strand, within Echvi_0572 at 650.728 kb on + strand, within Echvi_0572 at 650.730 kb on + strand, within Echvi_0572 at 650.753 kb on + strand, within Echvi_0572 at 650.755 kb on + strand, within Echvi_0572 at 650.773 kb on + strand, within Echvi_0572 at 650.786 kb on + strand, within Echvi_0572 at 650.791 kb on + strand, within Echvi_0572 at 650.792 kb on - strand, within Echvi_0572 at 650.795 kb on + strand, within Echvi_0572 at 650.795 kb on + strand, within Echvi_0572 at 650.861 kb on - strand, within Echvi_0572 at 650.861 kb on - strand, within Echvi_0572 at 650.861 kb on - strand, within Echvi_0572 at 650.863 kb on + strand, within Echvi_0572 at 650.864 kb on - strand, within Echvi_0572 at 650.882 kb on + strand, within Echvi_0572 at 650.883 kb on - strand, within Echvi_0572 at 650.958 kb on - strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.994 kb on + strand, within Echvi_0572 at 650.995 kb on - strand, within Echvi_0572 at 650.995 kb on - strand, within Echvi_0572 at 650.995 kb on - strand, within Echvi_0572 at 650.995 kb on - strand, within Echvi_0572 at 650.996 kb on + strand, within Echvi_0572
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 647,865 + -2.8 647,902 - -1.5 647,902 - +4.2 648,016 - +1.1 648,116 - Echvi_0569 0.21 -3.2 648,250 - Echvi_0569 0.37 +1.4 648,261 - Echvi_0569 0.38 +0.2 648,299 - Echvi_0569 0.43 -2.9 648,318 + Echvi_0569 0.45 +1.2 648,319 - Echvi_0569 0.45 -1.0 648,319 - Echvi_0569 0.45 +0.2 648,320 + Echvi_0569 0.45 +1.1 648,321 - Echvi_0569 0.45 -0.2 648,321 - Echvi_0569 0.45 -0.5 648,377 + Echvi_0569 0.52 -0.9 648,377 + Echvi_0569 0.52 -1.1 648,383 + Echvi_0569 0.53 +0.8 648,384 - Echvi_0569 0.53 +0.5 648,384 - Echvi_0569 0.53 -1.3 648,479 - Echvi_0569 0.64 +0.5 648,583 - Echvi_0569 0.77 +1.8 648,605 + Echvi_0569 0.79 -1.5 648,605 + Echvi_0569 0.79 -0.5 648,638 + Echvi_0569 0.83 +1.9 648,654 - Echvi_0569 0.85 +0.2 648,654 - Echvi_0569 0.85 -0.5 648,654 - Echvi_0569 0.85 +1.8 648,726 + -1.1 648,767 - -3.6 648,777 + +1.3 648,792 + +0.8 648,796 + +0.7 648,797 - +0.3 648,806 + +2.0 648,834 + -1.6 648,834 + +0.6 648,834 + -2.1 648,834 + +1.0 648,834 + -1.7 648,835 - -0.4 648,835 - -0.8 648,835 - -1.2 648,835 - -1.9 648,835 - +1.6 648,835 - +0.5 648,835 - +0.2 648,842 + +0.1 648,889 + -1.3 648,890 - +2.0 648,890 - -0.1 648,935 + -0.8 648,935 + +2.8 648,936 - +0.9 648,944 + +1.6 648,954 + -1.1 648,954 + -0.7 648,954 + +0.1 648,955 - -0.3 648,955 - -1.2 648,968 + +3.6 648,969 - -0.1 648,969 - +0.4 649,070 + Echvi_0570 0.18 +1.4 649,095 + Echvi_0570 0.20 +0.9 649,105 - Echvi_0570 0.21 -1.6 649,105 - Echvi_0570 0.21 +1.5 649,141 + Echvi_0570 0.24 -1.3 649,142 - Echvi_0570 0.24 +0.8 649,195 + Echvi_0570 0.29 +0.5 649,196 - Echvi_0570 0.29 -1.1 649,268 + Echvi_0570 0.35 +2.5 649,272 + Echvi_0570 0.35 +1.8 649,288 - Echvi_0570 0.37 +3.4 649,319 - Echvi_0570 0.39 -1.5 649,324 + Echvi_0570 0.40 +1.8 649,324 + Echvi_0570 0.40 +1.4 649,324 + Echvi_0570 0.40 -1.3 649,324 + Echvi_0570 0.40 +1.4 649,324 + Echvi_0570 0.40 -0.2 649,325 - Echvi_0570 0.40 +0.0 649,325 - Echvi_0570 0.40 +3.2 649,325 - Echvi_0570 0.40 -0.1 649,325 - Echvi_0570 0.40 -1.8 649,331 + Echvi_0570 0.40 +0.8 649,332 - Echvi_0570 0.41 +0.5 649,332 - Echvi_0570 0.41 -0.1 649,458 - Echvi_0570 0.51 -1.0 649,521 - Echvi_0570 0.57 +0.0 649,571 - Echvi_0570 0.61 -0.2 649,609 + Echvi_0570 0.65 +1.7 649,613 + Echvi_0570 0.65 +2.7 649,613 + Echvi_0570 0.65 -0.7 649,614 - Echvi_0570 0.65 -1.1 649,614 - Echvi_0570 0.65 +0.2 649,616 + Echvi_0570 0.65 -0.6 649,712 + Echvi_0570 0.73 +0.1 649,712 + Echvi_0570 0.73 -1.3 649,768 - Echvi_0570 0.78 -0.3 649,769 + Echvi_0570 0.78 +1.8 649,769 + Echvi_0570 0.78 +3.4 649,770 - Echvi_0570 0.78 -1.2 649,770 - Echvi_0570 0.78 -1.0 649,916 + -1.7 649,916 + -3.1 649,916 + -0.7 649,917 - +1.6 649,948 - -1.0 650,004 + +0.9 650,005 - +0.8 650,028 + Echvi_0571 0.19 +0.3 650,028 + Echvi_0571 0.19 +0.2 650,029 - Echvi_0571 0.20 +1.2 650,029 - Echvi_0571 0.20 -2.5 650,032 - Echvi_0571 0.21 +2.4 650,039 + Echvi_0571 0.24 -1.0 650,039 + Echvi_0571 0.24 +1.1 650,039 + Echvi_0571 0.24 +1.8 650,039 + Echvi_0571 0.24 +2.5 650,040 - Echvi_0571 0.24 +0.4 650,040 - Echvi_0571 0.24 +0.9 650,043 + Echvi_0571 0.25 -2.9 650,043 + Echvi_0571 0.25 -0.3 650,043 + Echvi_0571 0.25 +0.0 650,043 + Echvi_0571 0.25 +0.5 650,044 - Echvi_0571 0.26 +2.8 650,044 - Echvi_0571 0.26 -1.7 650,044 - Echvi_0571 0.26 +0.8 650,044 - Echvi_0571 0.26 +1.7 650,044 - Echvi_0571 0.26 +0.9 650,045 + Echvi_0571 0.26 +0.7 650,046 - Echvi_0571 0.26 +0.8 650,066 - Echvi_0571 0.35 -1.2 650,094 + Echvi_0571 0.46 +0.0 650,095 - Echvi_0571 0.46 -2.4 650,099 - Echvi_0571 0.48 +2.1 650,110 + Echvi_0571 0.52 -2.0 650,173 - Echvi_0571 0.78 -1.1 650,173 - Echvi_0571 0.78 +1.0 650,195 - Echvi_0571 0.87 +3.2 650,195 - Echvi_0571 0.87 +0.2 650,228 + +1.1 650,228 + +1.4 650,229 - -0.5 650,240 + +1.1 650,262 + -0.5 650,263 - +1.7 650,263 - +2.1 650,275 + +0.3 650,275 + -2.2 650,275 + +0.2 650,276 - -1.6 650,276 - -1.6 650,276 - -1.1 650,279 - -2.5 650,279 - -0.8 650,279 - -0.6 650,280 + +1.7 650,400 + Echvi_0572 0.13 -2.2 650,401 - Echvi_0572 0.13 -1.7 650,401 - Echvi_0572 0.13 -0.9 650,451 - Echvi_0572 0.18 -1.2 650,451 - Echvi_0572 0.18 -0.7 650,454 + Echvi_0572 0.18 -1.2 650,485 + Echvi_0572 0.21 -0.3 650,485 + Echvi_0572 0.21 -1.7 650,490 - Echvi_0572 0.21 +0.9 650,512 + Echvi_0572 0.23 +3.1 650,515 + Echvi_0572 0.23 +1.0 650,515 + Echvi_0572 0.23 -1.5 650,515 + Echvi_0572 0.23 -0.1 650,520 + Echvi_0572 0.24 +0.3 650,520 + Echvi_0572 0.24 -0.7 650,520 + Echvi_0572 0.24 -1.1 650,520 + Echvi_0572 0.24 -0.3 650,520 + Echvi_0572 0.24 -1.1 650,521 - Echvi_0572 0.24 +0.9 650,521 - Echvi_0572 0.24 -2.1 650,521 - Echvi_0572 0.24 +0.3 650,553 + Echvi_0572 0.27 -0.4 650,554 - Echvi_0572 0.27 -0.1 650,554 - Echvi_0572 0.27 +0.9 650,578 + Echvi_0572 0.29 -1.7 650,578 + Echvi_0572 0.29 +0.7 650,579 - Echvi_0572 0.29 -3.0 650,579 - Echvi_0572 0.29 -0.7 650,579 - Echvi_0572 0.29 -0.9 650,586 - Echvi_0572 0.30 +1.0 650,671 - Echvi_0572 0.37 +1.8 650,671 - Echvi_0572 0.37 -0.8 650,727 - Echvi_0572 0.42 -0.4 650,727 - Echvi_0572 0.42 +1.8 650,727 - Echvi_0572 0.42 +0.7 650,728 + Echvi_0572 0.42 +0.5 650,730 + Echvi_0572 0.42 +2.1 650,753 + Echvi_0572 0.44 +0.2 650,755 + Echvi_0572 0.45 +3.4 650,773 + Echvi_0572 0.46 -0.2 650,786 + Echvi_0572 0.47 +0.2 650,791 + Echvi_0572 0.48 +2.8 650,792 - Echvi_0572 0.48 +2.8 650,795 + Echvi_0572 0.48 +1.2 650,795 + Echvi_0572 0.48 +1.3 650,861 - Echvi_0572 0.54 -2.1 650,861 - Echvi_0572 0.54 +2.8 650,861 - Echvi_0572 0.54 -0.9 650,863 + Echvi_0572 0.54 +2.3 650,864 - Echvi_0572 0.54 -0.1 650,882 + Echvi_0572 0.56 +2.1 650,883 - Echvi_0572 0.56 +1.0 650,958 - Echvi_0572 0.62 +2.0 650,994 + Echvi_0572 0.66 +0.5 650,994 + Echvi_0572 0.66 -0.8 650,994 + Echvi_0572 0.66 -0.7 650,994 + Echvi_0572 0.66 -3.3 650,994 + Echvi_0572 0.66 +3.5 650,994 + Echvi_0572 0.66 -0.2 650,995 - Echvi_0572 0.66 +1.5 650,995 - Echvi_0572 0.66 -0.1 650,995 - Echvi_0572 0.66 -1.9 650,995 - Echvi_0572 0.66 -1.9 650,996 + Echvi_0572 0.66 -1.3
Or see this region's nucleotide sequence