Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0551

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0550 and Echvi_0551 are separated by 280 nucleotidesEchvi_0551 and Echvi_0552 are separated by 25 nucleotidesEchvi_0552 and Echvi_0553 overlap by 52 nucleotides Echvi_0550: Echvi_0550 - hypothetical protein, at 621,095 to 622,906 _0550 Echvi_0551: Echvi_0551 - hypothetical protein, at 623,187 to 623,294 _0551 Echvi_0552: Echvi_0552 - hypothetical protein, at 623,320 to 623,439 _0552 Echvi_0553: Echvi_0553 - hypothetical protein, at 623,388 to 623,882 _0553 Position (kb) 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 622.236 kb on + strand, within Echvi_0550at 622.236 kb on + strand, within Echvi_0550at 622.237 kb on - strand, within Echvi_0550at 622.237 kb on - strand, within Echvi_0550at 622.237 kb on - strand, within Echvi_0550at 622.269 kb on + strand, within Echvi_0550at 622.269 kb on + strand, within Echvi_0550at 622.270 kb on - strand, within Echvi_0550at 622.270 kb on - strand, within Echvi_0550at 622.270 kb on - strand, within Echvi_0550at 622.270 kb on - strand, within Echvi_0550at 622.273 kb on + strand, within Echvi_0550at 622.273 kb on + strand, within Echvi_0550at 622.273 kb on + strand, within Echvi_0550at 622.274 kb on - strand, within Echvi_0550at 622.274 kb on - strand, within Echvi_0550at 622.274 kb on - strand, within Echvi_0550at 622.294 kb on + strand, within Echvi_0550at 622.307 kb on - strand, within Echvi_0550at 622.331 kb on + strand, within Echvi_0550at 622.371 kb on + strand, within Echvi_0550at 622.390 kb on + strand, within Echvi_0550at 622.390 kb on + strand, within Echvi_0550at 622.398 kb on + strand, within Echvi_0550at 622.399 kb on - strand, within Echvi_0550at 622.406 kb on + strand, within Echvi_0550at 622.406 kb on + strand, within Echvi_0550at 622.407 kb on - strand, within Echvi_0550at 622.426 kb on + strand, within Echvi_0550at 622.426 kb on + strand, within Echvi_0550at 622.427 kb on - strand, within Echvi_0550at 622.427 kb on - strand, within Echvi_0550at 622.427 kb on - strand, within Echvi_0550at 622.427 kb on - strand, within Echvi_0550at 622.427 kb on - strand, within Echvi_0550at 622.428 kb on + strand, within Echvi_0550at 622.428 kb on + strand, within Echvi_0550at 622.429 kb on - strand, within Echvi_0550at 622.429 kb on - strand, within Echvi_0550at 622.429 kb on - strand, within Echvi_0550at 622.450 kb on + strand, within Echvi_0550at 622.450 kb on + strand, within Echvi_0550at 622.451 kb on - strand, within Echvi_0550at 622.451 kb on - strand, within Echvi_0550at 622.451 kb on - strand, within Echvi_0550at 622.523 kb on - strand, within Echvi_0550at 622.537 kb on + strand, within Echvi_0550at 622.559 kb on + strand, within Echvi_0550at 622.559 kb on + strand, within Echvi_0550at 622.560 kb on - strand, within Echvi_0550at 622.560 kb on - strand, within Echvi_0550at 622.579 kb on + strand, within Echvi_0550at 622.580 kb on - strand, within Echvi_0550at 622.580 kb on - strand, within Echvi_0550at 622.580 kb on - strand, within Echvi_0550at 622.604 kb on + strand, within Echvi_0550at 622.605 kb on - strand, within Echvi_0550at 622.622 kb on - strand, within Echvi_0550at 622.647 kb on - strand, within Echvi_0550at 622.748 kb on + strandat 622.749 kb on - strandat 622.866 kb on - strandat 622.882 kb on + strandat 623.006 kb on + strandat 623.006 kb on + strandat 623.071 kb on - strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.074 kb on - strandat 623.107 kb on + strandat 623.188 kb on + strandat 623.188 kb on + strandat 623.189 kb on - strandat 623.189 kb on - strandat 623.208 kb on + strand, within Echvi_0551at 623.209 kb on - strand, within Echvi_0551at 623.214 kb on + strand, within Echvi_0551at 623.225 kb on - strand, within Echvi_0551at 623.225 kb on - strand, within Echvi_0551at 623.225 kb on - strand, within Echvi_0551at 623.225 kb on - strand, within Echvi_0551at 623.225 kb on - strand, within Echvi_0551at 623.228 kb on + strand, within Echvi_0551at 623.228 kb on + strand, within Echvi_0551at 623.229 kb on - strand, within Echvi_0551at 623.290 kb on - strandat 623.309 kb on + strandat 623.382 kb on - strand, within Echvi_0552at 623.432 kb on + strandat 623.479 kb on + strand, within Echvi_0553at 623.541 kb on - strand, within Echvi_0553at 623.568 kb on - strand, within Echvi_0553at 623.603 kb on - strand, within Echvi_0553at 623.611 kb on + strand, within Echvi_0553at 623.612 kb on - strand, within Echvi_0553at 623.612 kb on - strand, within Echvi_0553at 623.684 kb on - strand, within Echvi_0553at 623.706 kb on - strand, within Echvi_0553at 623.706 kb on - strand, within Echvi_0553at 623.713 kb on + strand, within Echvi_0553at 623.713 kb on + strand, within Echvi_0553at 623.714 kb on - strand, within Echvi_0553at 623.780 kb on + strand, within Echvi_0553at 623.780 kb on + strand, within Echvi_0553at 623.781 kb on - strand, within Echvi_0553at 623.781 kb on - strand, within Echvi_0553at 623.781 kb on - strand, within Echvi_0553at 623.781 kb on - strand, within Echvi_0553at 623.782 kb on + strand, within Echvi_0553at 623.782 kb on + strand, within Echvi_0553at 623.783 kb on - strand, within Echvi_0553at 623.783 kb on - strand, within Echvi_0553at 623.847 kb on + strandat 623.847 kb on + strandat 623.847 kb on + strandat 623.848 kb on - strandat 623.848 kb on - strandat 623.848 kb on - strandat 623.848 kb on - strandat 623.849 kb on + strandat 623.850 kb on - strandat 623.850 kb on - strandat 623.859 kb on - strandat 623.928 kb on + strandat 623.929 kb on - strandat 623.929 kb on - strandat 623.929 kb on - strandat 623.939 kb on + strandat 623.960 kb on + strandat 623.960 kb on + strandat 623.960 kb on + strandat 623.961 kb on - strandat 623.961 kb on - strandat 623.967 kb on + strandat 624.010 kb on - strandat 624.019 kb on + strandat 624.019 kb on + strandat 624.019 kb on + strandat 624.019 kb on + strandat 624.028 kb on + strandat 624.075 kb on - strandat 624.079 kb on + strandat 624.080 kb on - strandat 624.080 kb on - strandat 624.140 kb on - strandat 624.143 kb on + strandat 624.144 kb on - strandat 624.160 kb on - strandat 624.164 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.212 kb on - strandat 624.224 kb on - strandat 624.224 kb on - strandat 624.224 kb on - strandat 624.224 kb on - strandat 624.224 kb on - strandat 624.227 kb on + strandat 624.227 kb on + strandat 624.227 kb on + strandat 624.277 kb on - strandat 624.287 kb on - strandat 624.287 kb on - strandat 624.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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622,236 + Echvi_0550 0.63 +1.1
622,236 + Echvi_0550 0.63 +0.3
622,237 - Echvi_0550 0.63 -1.2
622,237 - Echvi_0550 0.63 -1.5
622,237 - Echvi_0550 0.63 -1.0
622,269 + Echvi_0550 0.65 +0.7
622,269 + Echvi_0550 0.65 -1.5
622,270 - Echvi_0550 0.65 -2.3
622,270 - Echvi_0550 0.65 -0.7
622,270 - Echvi_0550 0.65 -1.7
622,270 - Echvi_0550 0.65 -3.3
622,273 + Echvi_0550 0.65 +0.3
622,273 + Echvi_0550 0.65 -0.3
622,273 + Echvi_0550 0.65 +1.5
622,274 - Echvi_0550 0.65 -3.0
622,274 - Echvi_0550 0.65 +0.9
622,274 - Echvi_0550 0.65 -2.7
622,294 + Echvi_0550 0.66 +1.2
622,307 - Echvi_0550 0.67 +1.5
622,331 + Echvi_0550 0.68 -0.4
622,371 + Echvi_0550 0.70 -2.0
622,390 + Echvi_0550 0.71 +0.1
622,390 + Echvi_0550 0.71 +3.0
622,398 + Echvi_0550 0.72 +3.1
622,399 - Echvi_0550 0.72 -1.3
622,406 + Echvi_0550 0.72 -2.2
622,406 + Echvi_0550 0.72 +0.5
622,407 - Echvi_0550 0.72 -2.2
622,426 + Echvi_0550 0.73 -0.2
622,426 + Echvi_0550 0.73 -2.9
622,427 - Echvi_0550 0.74 -2.8
622,427 - Echvi_0550 0.74 -2.6
622,427 - Echvi_0550 0.74 +3.4
622,427 - Echvi_0550 0.74 -2.4
622,427 - Echvi_0550 0.74 -2.6
622,428 + Echvi_0550 0.74 +2.2
622,428 + Echvi_0550 0.74 -1.2
622,429 - Echvi_0550 0.74 -0.7
622,429 - Echvi_0550 0.74 -0.6
622,429 - Echvi_0550 0.74 -1.3
622,450 + Echvi_0550 0.75 -0.8
622,450 + Echvi_0550 0.75 +1.2
622,451 - Echvi_0550 0.75 -2.0
622,451 - Echvi_0550 0.75 -2.2
622,451 - Echvi_0550 0.75 -1.8
622,523 - Echvi_0550 0.79 -1.7
622,537 + Echvi_0550 0.80 -2.7
622,559 + Echvi_0550 0.81 -1.8
622,559 + Echvi_0550 0.81 +1.5
622,560 - Echvi_0550 0.81 -2.0
622,560 - Echvi_0550 0.81 +0.1
622,579 + Echvi_0550 0.82 -3.7
622,580 - Echvi_0550 0.82 -1.4
622,580 - Echvi_0550 0.82 -1.5
622,580 - Echvi_0550 0.82 -0.8
622,604 + Echvi_0550 0.83 -0.6
622,605 - Echvi_0550 0.83 -1.2
622,622 - Echvi_0550 0.84 +0.9
622,647 - Echvi_0550 0.86 -0.3
622,748 + -1.6
622,749 - -2.9
622,866 - +2.6
622,882 + +1.2
623,006 + -2.0
623,006 + -0.3
623,071 - -0.7
623,073 + -0.4
623,073 + -0.8
623,073 + +0.7
623,074 - -1.5
623,107 + -0.1
623,188 + -1.7
623,188 + -1.1
623,189 - -2.1
623,189 - -1.8
623,208 + Echvi_0551 0.19 -1.8
623,209 - Echvi_0551 0.20 -0.5
623,214 + Echvi_0551 0.25 -2.0
623,225 - Echvi_0551 0.35 -2.0
623,225 - Echvi_0551 0.35 -3.1
623,225 - Echvi_0551 0.35 -3.0
623,225 - Echvi_0551 0.35 -1.2
623,225 - Echvi_0551 0.35 -2.7
623,228 + Echvi_0551 0.38 +0.1
623,228 + Echvi_0551 0.38 +0.0
623,229 - Echvi_0551 0.39 -3.4
623,290 - +1.3
623,309 + -2.0
623,382 - Echvi_0552 0.52 -0.1
623,432 + -1.2
623,479 + Echvi_0553 0.18 +2.1
623,541 - Echvi_0553 0.31 -3.5
623,568 - Echvi_0553 0.36 -0.4
623,603 - Echvi_0553 0.43 -2.1
623,611 + Echvi_0553 0.45 -0.1
623,612 - Echvi_0553 0.45 -1.1
623,612 - Echvi_0553 0.45 +0.3
623,684 - Echvi_0553 0.60 -1.2
623,706 - Echvi_0553 0.64 +0.9
623,706 - Echvi_0553 0.64 -2.3
623,713 + Echvi_0553 0.66 +1.8
623,713 + Echvi_0553 0.66 -1.6
623,714 - Echvi_0553 0.66 +1.9
623,780 + Echvi_0553 0.79 +1.8
623,780 + Echvi_0553 0.79 +2.5
623,781 - Echvi_0553 0.79 -0.8
623,781 - Echvi_0553 0.79 +0.3
623,781 - Echvi_0553 0.79 -2.9
623,781 - Echvi_0553 0.79 -2.7
623,782 + Echvi_0553 0.80 -3.1
623,782 + Echvi_0553 0.80 -0.1
623,783 - Echvi_0553 0.80 -1.2
623,783 - Echvi_0553 0.80 +2.9
623,847 + +2.1
623,847 + +0.0
623,847 + -1.5
623,848 - -2.1
623,848 - -1.5
623,848 - -0.7
623,848 - -0.3
623,849 + -0.8
623,850 - -1.8
623,850 - -1.4
623,859 - +1.7
623,928 + +1.6
623,929 - -1.0
623,929 - -1.4
623,929 - -0.4
623,939 + -1.6
623,960 + +3.1
623,960 + +1.3
623,960 + -1.6
623,961 - +0.9
623,961 - -0.8
623,967 + -0.8
624,010 - +1.3
624,019 + +2.8
624,019 + +0.8
624,019 + -1.1
624,019 + -0.7
624,028 + -1.2
624,075 - +0.9
624,079 + -2.3
624,080 - +1.0
624,080 - -2.5
624,140 - -0.7
624,143 + +0.0
624,144 - -1.2
624,160 - -2.0
624,164 - +1.4
624,212 - -0.2
624,212 - -0.1
624,212 - +0.3
624,224 - -1.0
624,224 - +2.1
624,224 - -3.2
624,224 - +1.2
624,224 - -2.1
624,227 + +1.2
624,227 + +0.3
624,227 + -0.1
624,277 - +0.9
624,287 - -2.6
624,287 - +1.9
624,287 - +0.6

Or see this region's nucleotide sequence