Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0520 and Echvi_0521 are separated by 83 nucleotides Echvi_0521 and Echvi_0522 are separated by 12 nucleotides Echvi_0522 and Echvi_0523 are separated by 11 nucleotides
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Echvi_0521: Echvi_0521 - hypothetical protein, at 586,054 to 586,737
_0521
Echvi_0522: Echvi_0522 - SusD family., at 586,750 to 588,612
_0522
Echvi_0523: Echvi_0523 - TonB-linked outer membrane protein, SusC/RagA family, at 588,624 to 591,827
_0523
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand at 586.024 kb on + strand at 586.024 kb on + strand at 586.025 kb on - strand at 586.045 kb on - strand at 586.055 kb on + strand at 586.086 kb on - strand at 586.120 kb on + strand at 586.120 kb on + strand at 586.132 kb on + strand, within Echvi_0521 at 586.133 kb on - strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.269 kb on - strand, within Echvi_0521 at 586.335 kb on + strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.355 kb on + strand, within Echvi_0521 at 586.360 kb on - strand, within Echvi_0521 at 586.379 kb on + strand, within Echvi_0521 at 586.484 kb on + strand, within Echvi_0521 at 586.623 kb on - strand, within Echvi_0521 at 586.665 kb on + strand, within Echvi_0521 at 586.670 kb on + strand at 586.690 kb on - strand at 586.725 kb on + strand at 586.730 kb on - strand at 586.730 kb on - strand at 586.737 kb on + strand at 586.795 kb on - strand at 586.814 kb on + strand at 586.814 kb on + strand at 586.817 kb on + strand at 586.817 kb on + strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.885 kb on - strand at 586.885 kb on - strand at 586.919 kb on + strand at 586.920 kb on - strand at 586.933 kb on - strand at 586.934 kb on + strand at 586.941 kb on + strand, within Echvi_0522 at 586.941 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.963 kb on - strand, within Echvi_0522 at 586.984 kb on + strand, within Echvi_0522 at 587.000 kb on + strand, within Echvi_0522 at 587.001 kb on - strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.073 kb on + strand, within Echvi_0522 at 587.115 kb on + strand, within Echvi_0522 at 587.212 kb on + strand, within Echvi_0522 at 587.213 kb on - strand, within Echvi_0522 at 587.213 kb on - strand, within Echvi_0522 at 587.221 kb on - strand, within Echvi_0522 at 587.226 kb on + strand, within Echvi_0522 at 587.257 kb on + strand, within Echvi_0522 at 587.258 kb on - strand, within Echvi_0522 at 587.261 kb on + strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.274 kb on - strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.291 kb on - strand, within Echvi_0522 at 587.329 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.396 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.472 kb on + strand, within Echvi_0522 at 587.473 kb on - strand, within Echvi_0522 at 587.478 kb on + strand, within Echvi_0522 at 587.483 kb on + strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.485 kb on + strand, within Echvi_0522 at 587.485 kb on + strand, within Echvi_0522 at 587.532 kb on - strand, within Echvi_0522 at 587.532 kb on - strand, within Echvi_0522 at 587.580 kb on + strand, within Echvi_0522 at 587.591 kb on + strand, within Echvi_0522 at 587.592 kb on - strand, within Echvi_0522 at 587.597 kb on + strand, within Echvi_0522 at 587.674 kb on - strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.679 kb on - strand, within Echvi_0522 at 587.679 kb on - strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.801 kb on + strand, within Echvi_0522 at 587.801 kb on + strand, within Echvi_0522 at 587.802 kb on - strand, within Echvi_0522 at 587.802 kb on - strand, within Echvi_0522 at 587.804 kb on - strand, within Echvi_0522 at 587.804 kb on - strand, within Echvi_0522 at 587.931 kb on + strand, within Echvi_0522 at 587.937 kb on - strand, within Echvi_0522 at 588.033 kb on + strand, within Echvi_0522 at 588.061 kb on + strand, within Echvi_0522 at 588.061 kb on + strand, within Echvi_0522 at 588.071 kb on + strand, within Echvi_0522 at 588.072 kb on - strand, within Echvi_0522 at 588.088 kb on - strand, within Echvi_0522 at 588.107 kb on + strand, within Echvi_0522 at 588.108 kb on - strand, within Echvi_0522 at 588.111 kb on + strand, within Echvi_0522 at 588.111 kb on + strand, within Echvi_0522 at 588.222 kb on + strand, within Echvi_0522 at 588.265 kb on + strand, within Echvi_0522 at 588.266 kb on - strand, within Echvi_0522 at 588.303 kb on + strand, within Echvi_0522 at 588.303 kb on + strand, within Echvi_0522 at 588.304 kb on - strand, within Echvi_0522 at 588.304 kb on - strand, within Echvi_0522 at 588.306 kb on - strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.336 kb on - strand, within Echvi_0522 at 588.356 kb on + strand, within Echvi_0522 at 588.369 kb on + strand, within Echvi_0522 at 588.369 kb on + strand, within Echvi_0522 at 588.371 kb on + strand, within Echvi_0522 at 588.466 kb on + strand at 588.466 kb on + strand at 588.496 kb on + strand at 588.496 kb on + strand at 588.497 kb on - strand at 588.511 kb on + strand at 588.514 kb on + strand at 588.514 kb on + strand at 588.514 kb on + strand at 588.515 kb on - strand at 588.516 kb on + strand at 588.517 kb on - strand at 588.578 kb on - strand at 588.604 kb on + strand at 588.638 kb on + strand at 588.638 kb on + strand at 588.639 kb on - strand at 588.639 kb on - strand at 588.765 kb on + strand at 588.837 kb on + strand at 588.842 kb on - strand at 588.913 kb on + strand at 588.913 kb on + strand at 588.917 kb on + strand at 588.918 kb on - strand at 588.948 kb on + strand, within Echvi_0523 at 588.948 kb on + strand, within Echvi_0523 at 588.949 kb on - strand, within Echvi_0523 at 588.980 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.090 kb on + strand, within Echvi_0523 at 589.091 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.107 kb on + strand, within Echvi_0523 at 589.108 kb on - strand at 589.123 kb on + strand, within Echvi_0523 at 589.123 kb on + strand, within Echvi_0523 at 589.124 kb on - strand, within Echvi_0523 at 589.258 kb on + strand, within Echvi_0523 at 589.258 kb on + strand, within Echvi_0523 at 589.301 kb on + strand, within Echvi_0523 at 589.303 kb on + strand, within Echvi_0523 at 589.393 kb on - strand, within Echvi_0523 at 589.457 kb on + strand, within Echvi_0523 at 589.457 kb on + strand, within Echvi_0523 at 589.460 kb on - strand, within Echvi_0523 at 589.469 kb on + strand, within Echvi_0523 at 589.469 kb on + strand, within Echvi_0523 at 589.485 kb on - strand, within Echvi_0523 at 589.488 kb on + strand, within Echvi_0523 at 589.527 kb on + strand, within Echvi_0523 at 589.527 kb on + strand, within Echvi_0523 at 589.552 kb on + strand, within Echvi_0523 at 589.553 kb on - strand, within Echvi_0523
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 585,858 + Echvi_0520 0.89 +4.2 585,858 + Echvi_0520 0.89 +1.7 585,861 + Echvi_0520 0.89 +1.5 585,861 + Echvi_0520 0.89 -1.3 585,861 + Echvi_0520 0.89 +1.0 585,862 - Echvi_0520 0.89 +4.5 585,862 - Echvi_0520 0.89 +3.4 585,952 + -0.1 586,024 + +1.9 586,024 + +0.9 586,025 - +1.2 586,045 - +3.3 586,055 + -0.2 586,086 - -1.0 586,120 + -0.4 586,120 + +0.7 586,132 + Echvi_0521 0.11 +0.8 586,133 - Echvi_0521 0.12 +0.5 586,150 + Echvi_0521 0.14 +1.0 586,150 + Echvi_0521 0.14 -0.3 586,150 + Echvi_0521 0.14 +0.6 586,268 + Echvi_0521 0.31 +1.1 586,268 + Echvi_0521 0.31 +1.5 586,269 - Echvi_0521 0.31 +4.0 586,335 + Echvi_0521 0.41 -3.9 586,336 - Echvi_0521 0.41 +2.1 586,336 - Echvi_0521 0.41 +1.4 586,338 + Echvi_0521 0.42 -1.0 586,338 + Echvi_0521 0.42 -0.5 586,338 + Echvi_0521 0.42 +0.7 586,338 + Echvi_0521 0.42 -0.6 586,339 - Echvi_0521 0.42 -0.5 586,339 - Echvi_0521 0.42 +2.9 586,355 + Echvi_0521 0.44 +1.4 586,360 - Echvi_0521 0.45 +3.3 586,379 + Echvi_0521 0.48 -0.4 586,484 + Echvi_0521 0.63 -0.2 586,623 - Echvi_0521 0.83 +1.6 586,665 + Echvi_0521 0.89 -0.1 586,670 + +1.9 586,690 - +0.2 586,725 + -1.0 586,730 - +2.5 586,730 - +1.7 586,737 + -2.0 586,795 - +3.5 586,814 + -1.4 586,814 + +1.0 586,817 + +1.1 586,817 + +3.2 586,818 - -1.2 586,818 - +1.0 586,818 - +1.3 586,818 - -1.4 586,880 + -1.4 586,881 - +2.8 586,881 - +2.5 586,881 - +1.5 586,884 + -3.3 586,884 + +2.7 586,884 + -0.3 586,884 + +0.9 586,885 - +2.6 586,885 - -1.3 586,919 + +0.9 586,920 - +1.4 586,933 - +3.8 586,934 + -0.1 586,941 + Echvi_0522 0.10 +0.2 586,941 + Echvi_0522 0.10 +0.7 586,962 + Echvi_0522 0.11 -0.3 586,962 + Echvi_0522 0.11 -0.9 586,962 + Echvi_0522 0.11 +1.3 586,963 - Echvi_0522 0.11 -1.3 586,984 + Echvi_0522 0.13 +1.4 587,000 + Echvi_0522 0.13 +2.1 587,001 - Echvi_0522 0.13 +2.2 587,062 + Echvi_0522 0.17 -2.0 587,062 + Echvi_0522 0.17 -1.9 587,062 + Echvi_0522 0.17 -1.2 587,073 + Echvi_0522 0.17 -0.7 587,115 + Echvi_0522 0.20 +0.5 587,212 + Echvi_0522 0.25 -1.4 587,213 - Echvi_0522 0.25 +3.0 587,213 - Echvi_0522 0.25 +0.7 587,221 - Echvi_0522 0.25 +1.3 587,226 + Echvi_0522 0.26 -1.1 587,257 + Echvi_0522 0.27 +0.6 587,258 - Echvi_0522 0.27 +0.3 587,261 + Echvi_0522 0.27 +0.1 587,262 - Echvi_0522 0.27 +1.9 587,262 - Echvi_0522 0.27 +1.5 587,262 - Echvi_0522 0.27 +1.4 587,265 + Echvi_0522 0.28 -3.8 587,265 + Echvi_0522 0.28 -1.3 587,265 + Echvi_0522 0.28 +1.4 587,266 - Echvi_0522 0.28 +4.9 587,266 - Echvi_0522 0.28 +0.7 587,266 - Echvi_0522 0.28 +0.5 587,274 - Echvi_0522 0.28 +2.8 587,286 + Echvi_0522 0.29 +0.9 587,286 + Echvi_0522 0.29 -0.3 587,286 + Echvi_0522 0.29 -1.0 587,290 + Echvi_0522 0.29 +2.3 587,290 + Echvi_0522 0.29 -2.2 587,290 + Echvi_0522 0.29 +2.0 587,290 + Echvi_0522 0.29 -0.7 587,290 + Echvi_0522 0.29 -1.0 587,291 - Echvi_0522 0.29 +1.4 587,329 + Echvi_0522 0.31 +2.8 587,391 + Echvi_0522 0.34 +1.0 587,391 + Echvi_0522 0.34 +0.1 587,391 + Echvi_0522 0.34 -2.4 587,391 + Echvi_0522 0.34 +3.0 587,391 + Echvi_0522 0.34 +1.5 587,396 + Echvi_0522 0.35 +0.5 587,437 + Echvi_0522 0.37 +2.3 587,437 + Echvi_0522 0.37 -1.8 587,437 + Echvi_0522 0.37 -2.5 587,472 + Echvi_0522 0.39 +2.0 587,473 - Echvi_0522 0.39 +3.6 587,478 + Echvi_0522 0.39 -2.0 587,483 + Echvi_0522 0.39 -0.3 587,484 - Echvi_0522 0.39 +0.9 587,484 - Echvi_0522 0.39 +4.7 587,484 - Echvi_0522 0.39 -1.0 587,484 - Echvi_0522 0.39 +2.1 587,485 + Echvi_0522 0.39 +2.1 587,485 + Echvi_0522 0.39 -2.0 587,532 - Echvi_0522 0.42 -0.5 587,532 - Echvi_0522 0.42 -1.0 587,580 + Echvi_0522 0.45 -1.4 587,591 + Echvi_0522 0.45 -1.2 587,592 - Echvi_0522 0.45 +2.7 587,597 + Echvi_0522 0.45 -0.6 587,674 - Echvi_0522 0.50 +2.6 587,678 + Echvi_0522 0.50 +0.4 587,678 + Echvi_0522 0.50 +0.9 587,678 + Echvi_0522 0.50 -1.3 587,679 - Echvi_0522 0.50 +0.5 587,679 - Echvi_0522 0.50 +0.7 587,799 + Echvi_0522 0.56 -2.5 587,799 + Echvi_0522 0.56 -0.7 587,799 + Echvi_0522 0.56 -0.8 587,800 - Echvi_0522 0.56 +2.3 587,800 - Echvi_0522 0.56 -0.7 587,800 - Echvi_0522 0.56 +2.1 587,801 + Echvi_0522 0.56 +3.5 587,801 + Echvi_0522 0.56 -2.8 587,802 - Echvi_0522 0.56 -0.6 587,802 - Echvi_0522 0.56 +2.0 587,804 - Echvi_0522 0.57 +3.0 587,804 - Echvi_0522 0.57 -1.0 587,931 + Echvi_0522 0.63 +1.7 587,937 - Echvi_0522 0.64 -0.1 588,033 + Echvi_0522 0.69 +0.6 588,061 + Echvi_0522 0.70 -2.3 588,061 + Echvi_0522 0.70 -3.0 588,071 + Echvi_0522 0.71 +2.1 588,072 - Echvi_0522 0.71 +3.0 588,088 - Echvi_0522 0.72 +1.5 588,107 + Echvi_0522 0.73 -0.3 588,108 - Echvi_0522 0.73 -0.5 588,111 + Echvi_0522 0.73 +2.5 588,111 + Echvi_0522 0.73 -2.5 588,222 + Echvi_0522 0.79 +0.3 588,265 + Echvi_0522 0.81 +0.8 588,266 - Echvi_0522 0.81 +0.7 588,303 + Echvi_0522 0.83 +0.3 588,303 + Echvi_0522 0.83 +1.8 588,304 - Echvi_0522 0.83 +2.5 588,304 - Echvi_0522 0.83 -2.2 588,306 - Echvi_0522 0.84 -1.5 588,335 + Echvi_0522 0.85 +0.4 588,335 + Echvi_0522 0.85 -1.9 588,335 + Echvi_0522 0.85 -0.1 588,336 - Echvi_0522 0.85 +0.2 588,356 + Echvi_0522 0.86 -0.8 588,369 + Echvi_0522 0.87 +3.0 588,369 + Echvi_0522 0.87 +0.9 588,371 + Echvi_0522 0.87 +1.0 588,466 + -1.2 588,466 + +0.2 588,496 + -1.0 588,496 + +2.7 588,497 - -0.3 588,511 + +1.1 588,514 + +1.5 588,514 + +3.7 588,514 + -1.1 588,515 - +4.1 588,516 + +1.6 588,517 - +0.5 588,578 - +3.3 588,604 + +0.9 588,638 + -0.2 588,638 + +1.5 588,639 - +3.2 588,639 - +1.0 588,765 + -1.7 588,837 + +0.5 588,842 - +1.5 588,913 + -2.0 588,913 + +0.9 588,917 + -0.8 588,918 - -0.8 588,948 + Echvi_0523 0.10 +0.2 588,948 + Echvi_0523 0.10 +2.0 588,949 - Echvi_0523 0.10 +1.4 588,980 + Echvi_0523 0.11 +0.1 589,049 + Echvi_0523 0.13 +0.7 589,049 + Echvi_0523 0.13 -0.6 589,049 + Echvi_0523 0.13 -0.3 589,090 + Echvi_0523 0.15 +2.8 589,091 - Echvi_0523 0.15 +3.1 589,095 - Echvi_0523 0.15 +0.7 589,095 - Echvi_0523 0.15 +1.3 589,095 - Echvi_0523 0.15 +2.5 589,107 + Echvi_0523 0.15 +0.8 589,108 - +1.5 589,123 + Echvi_0523 0.16 +0.0 589,123 + Echvi_0523 0.16 -2.6 589,124 - Echvi_0523 0.16 +3.1 589,258 + Echvi_0523 0.20 +0.5 589,258 + Echvi_0523 0.20 +1.4 589,301 + Echvi_0523 0.21 +0.9 589,303 + Echvi_0523 0.21 +0.5 589,393 - Echvi_0523 0.24 -0.4 589,457 + Echvi_0523 0.26 -0.2 589,457 + Echvi_0523 0.26 -1.3 589,460 - Echvi_0523 0.26 +1.9 589,469 + Echvi_0523 0.26 +0.3 589,469 + Echvi_0523 0.26 -2.7 589,485 - Echvi_0523 0.27 +1.5 589,488 + Echvi_0523 0.27 +2.5 589,527 + Echvi_0523 0.28 -0.6 589,527 + Echvi_0523 0.28 -0.1 589,552 + Echvi_0523 0.29 +0.5 589,553 - Echvi_0523 0.29 +0.7
Or see this region's nucleotide sequence