Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0516 and Echvi_0517 are separated by 43 nucleotides Echvi_0517 and Echvi_0518 are separated by 99 nucleotides
Echvi_0516: Echvi_0516 - Alpha-L-arabinofuranosidase, at 577,516 to 579,066
_0516
Echvi_0517: Echvi_0517 - Glycoside hydrolase 97., at 579,110 to 581,041
_0517
Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495
_0518
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 578.119 kb on - strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.144 kb on + strand, within Echvi_0516 at 578.145 kb on - strand, within Echvi_0516 at 578.145 kb on - strand, within Echvi_0516 at 578.274 kb on + strand, within Echvi_0516 at 578.275 kb on - strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.276 kb on + strand, within Echvi_0516 at 578.277 kb on - strand, within Echvi_0516 at 578.277 kb on - strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.279 kb on + strand, within Echvi_0516 at 578.280 kb on - strand, within Echvi_0516 at 578.418 kb on - strand, within Echvi_0516 at 578.418 kb on - strand, within Echvi_0516 at 578.418 kb on - strand, within Echvi_0516 at 578.438 kb on + strand, within Echvi_0516 at 578.439 kb on - strand, within Echvi_0516 at 578.441 kb on + strand, within Echvi_0516 at 578.495 kb on + strand, within Echvi_0516 at 578.548 kb on - strand, within Echvi_0516 at 578.554 kb on + strand, within Echvi_0516 at 578.555 kb on - strand, within Echvi_0516 at 578.571 kb on + strand, within Echvi_0516 at 578.572 kb on - strand, within Echvi_0516 at 578.573 kb on + strand, within Echvi_0516 at 578.574 kb on - strand, within Echvi_0516 at 578.574 kb on - strand, within Echvi_0516 at 578.574 kb on - strand, within Echvi_0516 at 578.626 kb on - strand at 578.628 kb on + strand, within Echvi_0516 at 578.628 kb on + strand, within Echvi_0516 at 578.628 kb on + strand, within Echvi_0516 at 578.630 kb on + strand, within Echvi_0516 at 578.630 kb on + strand, within Echvi_0516 at 578.630 kb on + strand, within Echvi_0516 at 578.653 kb on + strand, within Echvi_0516 at 578.849 kb on + strand, within Echvi_0516 at 578.900 kb on + strand, within Echvi_0516 at 578.900 kb on + strand, within Echvi_0516 at 578.901 kb on - strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.902 kb on + strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.903 kb on - strand, within Echvi_0516 at 578.904 kb on + strand, within Echvi_0516 at 578.905 kb on - strand, within Echvi_0516 at 578.941 kb on - strand at 579.007 kb on - strand at 579.025 kb on + strand at 579.049 kb on + strand at 579.050 kb on - strand at 579.155 kb on + strand at 579.155 kb on + strand at 579.205 kb on + strand at 579.235 kb on + strand at 579.309 kb on + strand, within Echvi_0517 at 579.480 kb on + strand, within Echvi_0517 at 579.480 kb on + strand, within Echvi_0517 at 579.481 kb on - strand, within Echvi_0517 at 579.482 kb on + strand, within Echvi_0517 at 579.482 kb on + strand, within Echvi_0517 at 579.483 kb on - strand, within Echvi_0517 at 579.483 kb on - strand, within Echvi_0517 at 579.485 kb on + strand, within Echvi_0517 at 579.485 kb on + strand, within Echvi_0517 at 579.560 kb on - strand, within Echvi_0517 at 579.666 kb on - strand, within Echvi_0517 at 579.716 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.772 kb on + strand, within Echvi_0517 at 579.773 kb on - strand, within Echvi_0517 at 579.773 kb on - strand at 579.773 kb on - strand, within Echvi_0517 at 579.773 kb on - strand, within Echvi_0517 at 579.859 kb on + strand, within Echvi_0517 at 579.943 kb on - strand, within Echvi_0517 at 579.995 kb on + strand, within Echvi_0517 at 580.095 kb on + strand, within Echvi_0517 at 580.095 kb on + strand, within Echvi_0517 at 580.095 kb on + strand, within Echvi_0517 at 580.096 kb on - strand, within Echvi_0517 at 580.096 kb on - strand, within Echvi_0517 at 580.219 kb on + strand, within Echvi_0517 at 580.534 kb on + strand, within Echvi_0517 at 580.538 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.612 kb on + strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.613 kb on - strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.616 kb on + strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.617 kb on - strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.740 kb on + strand, within Echvi_0517 at 580.776 kb on + strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.777 kb on - strand, within Echvi_0517 at 580.833 kb on - strand, within Echvi_0517 at 580.874 kb on + strand at 580.874 kb on + strand at 580.874 kb on + strand at 580.875 kb on - strand at 580.875 kb on - strand at 580.898 kb on - strand at 581.009 kb on - strand at 581.009 kb on - strand at 581.031 kb on - strand at 581.107 kb on + strand at 581.142 kb on + strand at 581.142 kb on + strand at 581.400 kb on + strand, within Echvi_0518 at 581.458 kb on + strand, within Echvi_0518 at 581.637 kb on - strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.643 kb on + strand, within Echvi_0518 at 581.644 kb on - strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.681 kb on + strand, within Echvi_0518 at 581.974 kb on + strand, within Echvi_0518
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 578,119 - Echvi_0516 0.39 +2.5 578,144 + Echvi_0516 0.40 +1.3 578,144 + Echvi_0516 0.40 -0.1 578,144 + Echvi_0516 0.40 -0.8 578,145 - Echvi_0516 0.41 +2.5 578,145 - Echvi_0516 0.41 -0.3 578,274 + Echvi_0516 0.49 +0.6 578,275 - Echvi_0516 0.49 +3.4 578,276 + Echvi_0516 0.49 -1.8 578,276 + Echvi_0516 0.49 -2.7 578,276 + Echvi_0516 0.49 -2.9 578,277 - Echvi_0516 0.49 +1.5 578,277 - Echvi_0516 0.49 +3.0 578,279 + Echvi_0516 0.49 -1.2 578,279 + Echvi_0516 0.49 +1.0 578,279 + Echvi_0516 0.49 -0.1 578,280 - Echvi_0516 0.49 +3.4 578,418 - Echvi_0516 0.58 +2.0 578,418 - Echvi_0516 0.58 +2.4 578,418 - Echvi_0516 0.58 +2.7 578,438 + Echvi_0516 0.59 -1.9 578,439 - Echvi_0516 0.60 +0.5 578,441 + Echvi_0516 0.60 -0.1 578,495 + Echvi_0516 0.63 -0.3 578,548 - Echvi_0516 0.67 +4.8 578,554 + Echvi_0516 0.67 -1.3 578,555 - Echvi_0516 0.67 +3.2 578,571 + Echvi_0516 0.68 -0.7 578,572 - Echvi_0516 0.68 +2.8 578,573 + Echvi_0516 0.68 -1.1 578,574 - Echvi_0516 0.68 +3.8 578,574 - Echvi_0516 0.68 +3.2 578,574 - Echvi_0516 0.68 +3.2 578,626 - +1.5 578,628 + Echvi_0516 0.72 +0.2 578,628 + Echvi_0516 0.72 +2.3 578,628 + Echvi_0516 0.72 -2.1 578,630 + Echvi_0516 0.72 -1.3 578,630 + Echvi_0516 0.72 -1.7 578,630 + Echvi_0516 0.72 +0.5 578,653 + Echvi_0516 0.73 -0.8 578,849 + Echvi_0516 0.86 +0.7 578,900 + Echvi_0516 0.89 -2.7 578,900 + Echvi_0516 0.89 -0.1 578,901 - Echvi_0516 0.89 +3.7 578,902 + Echvi_0516 0.89 +1.5 578,902 + Echvi_0516 0.89 -2.0 578,902 + Echvi_0516 0.89 +2.6 578,902 + Echvi_0516 0.89 +1.7 578,902 + Echvi_0516 0.89 -2.8 578,902 + Echvi_0516 0.89 -0.4 578,902 + Echvi_0516 0.89 +2.5 578,902 + Echvi_0516 0.89 -2.6 578,902 + Echvi_0516 0.89 -2.9 578,903 - Echvi_0516 0.89 +2.0 578,903 - Echvi_0516 0.89 +0.5 578,903 - Echvi_0516 0.89 -0.1 578,903 - Echvi_0516 0.89 +2.5 578,903 - Echvi_0516 0.89 -0.4 578,903 - Echvi_0516 0.89 +4.0 578,904 + Echvi_0516 0.89 -1.7 578,905 - Echvi_0516 0.90 -0.3 578,941 - +2.2 579,007 - +3.3 579,025 + +1.0 579,049 + +0.7 579,050 - +0.9 579,155 + -0.2 579,155 + +0.0 579,205 + +2.3 579,235 + +0.7 579,309 + Echvi_0517 0.10 -0.7 579,480 + Echvi_0517 0.19 +1.4 579,480 + Echvi_0517 0.19 -0.5 579,481 - Echvi_0517 0.19 +3.2 579,482 + Echvi_0517 0.19 +1.6 579,482 + Echvi_0517 0.19 +3.3 579,483 - Echvi_0517 0.19 +3.5 579,483 - Echvi_0517 0.19 +3.9 579,485 + Echvi_0517 0.19 -1.3 579,485 + Echvi_0517 0.19 +0.9 579,560 - Echvi_0517 0.23 +3.9 579,666 - Echvi_0517 0.29 +1.9 579,716 + Echvi_0517 0.31 +0.5 579,772 + Echvi_0517 0.34 +0.5 579,772 + Echvi_0517 0.34 -0.3 579,772 + Echvi_0517 0.34 +3.1 579,772 + Echvi_0517 0.34 -0.9 579,772 + Echvi_0517 0.34 -1.3 579,772 + Echvi_0517 0.34 +2.5 579,772 + Echvi_0517 0.34 -1.0 579,773 - Echvi_0517 0.34 +1.2 579,773 - +1.5 579,773 - Echvi_0517 0.34 +4.4 579,773 - Echvi_0517 0.34 +4.3 579,859 + Echvi_0517 0.39 -2.6 579,943 - Echvi_0517 0.43 +3.5 579,995 + Echvi_0517 0.46 +2.7 580,095 + Echvi_0517 0.51 +1.9 580,095 + Echvi_0517 0.51 -0.5 580,095 + Echvi_0517 0.51 -0.5 580,096 - Echvi_0517 0.51 +0.2 580,096 - Echvi_0517 0.51 +6.4 580,219 + Echvi_0517 0.57 +0.6 580,534 + Echvi_0517 0.74 +1.0 580,538 + Echvi_0517 0.74 -1.8 580,612 + Echvi_0517 0.78 +1.8 580,612 + Echvi_0517 0.78 -1.1 580,613 - Echvi_0517 0.78 +2.2 580,613 - Echvi_0517 0.78 +2.2 580,616 + Echvi_0517 0.78 -1.0 580,616 + Echvi_0517 0.78 +0.2 580,616 + Echvi_0517 0.78 +0.3 580,617 - Echvi_0517 0.78 +1.0 580,617 - Echvi_0517 0.78 -1.0 580,617 - Echvi_0517 0.78 +1.4 580,740 + Echvi_0517 0.84 +0.0 580,740 + Echvi_0517 0.84 +1.0 580,776 + Echvi_0517 0.86 +0.8 580,777 - Echvi_0517 0.86 +1.6 580,777 - Echvi_0517 0.86 -0.1 580,833 - Echvi_0517 0.89 +1.3 580,874 + +2.3 580,874 + +0.2 580,874 + -0.9 580,875 - -0.5 580,875 - -0.7 580,898 - -0.3 581,009 - +1.9 581,009 - +3.7 581,031 - +0.5 581,107 + -0.8 581,142 + +2.6 581,142 + +4.8 581,400 + Echvi_0518 0.11 -0.4 581,458 + Echvi_0518 0.13 +0.9 581,637 - Echvi_0518 0.21 +5.9 581,643 + Echvi_0518 0.21 +2.2 581,643 + Echvi_0518 0.21 +1.5 581,644 - Echvi_0518 0.21 +2.7 581,681 + Echvi_0518 0.23 +0.1 581,681 + Echvi_0518 0.23 +1.6 581,974 + Echvi_0518 0.35 +2.4
Or see this region's nucleotide sequence