Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0516

Experiment: m.b. D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0515 and Echvi_0516 are separated by 130 nucleotidesEchvi_0516 and Echvi_0517 are separated by 43 nucleotides Echvi_0515: Echvi_0515 - Ribulokinase (EC 2.7.1.16) (from data), at 575,697 to 577,385 _0515 Echvi_0516: Echvi_0516 - Alpha-L-arabinofuranosidase, at 577,516 to 579,066 _0516 Echvi_0517: Echvi_0517 - Glycoside hydrolase 97., at 579,110 to 581,041 _0517 Position (kb) 577 578 579 580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 576.546 kb on + strand, within Echvi_0515at 576.671 kb on - strand, within Echvi_0515at 576.765 kb on - strand, within Echvi_0515at 576.931 kb on + strand, within Echvi_0515at 576.931 kb on + strand, within Echvi_0515at 576.932 kb on - strand, within Echvi_0515at 576.946 kb on + strand, within Echvi_0515at 576.955 kb on + strand, within Echvi_0515at 576.955 kb on + strand, within Echvi_0515at 577.230 kb on - strandat 577.329 kb on + strandat 577.354 kb on + strandat 577.359 kb on + strandat 577.428 kb on - strandat 577.430 kb on + strandat 577.431 kb on - strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.486 kb on + strandat 577.487 kb on - strandat 577.487 kb on - strandat 577.512 kb on + strandat 577.512 kb on + strandat 577.517 kb on + strandat 577.531 kb on + strandat 577.534 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.564 kb on + strandat 577.565 kb on - strandat 577.565 kb on - strandat 577.609 kb on + strandat 577.610 kb on - strandat 577.706 kb on - strand, within Echvi_0516at 577.895 kb on + strand, within Echvi_0516at 577.895 kb on + strand, within Echvi_0516at 577.899 kb on + strand, within Echvi_0516at 577.918 kb on - strand, within Echvi_0516at 578.076 kb on + strand, within Echvi_0516at 578.119 kb on - strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.274 kb on + strand, within Echvi_0516at 578.275 kb on - strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.280 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.438 kb on + strand, within Echvi_0516at 578.439 kb on - strand, within Echvi_0516at 578.441 kb on + strand, within Echvi_0516at 578.495 kb on + strand, within Echvi_0516at 578.548 kb on - strand, within Echvi_0516at 578.554 kb on + strand, within Echvi_0516at 578.555 kb on - strand, within Echvi_0516at 578.571 kb on + strand, within Echvi_0516at 578.572 kb on - strand, within Echvi_0516at 578.573 kb on + strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.626 kb on - strandat 578.628 kb on + strand, within Echvi_0516at 578.628 kb on + strand, within Echvi_0516at 578.628 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.653 kb on + strand, within Echvi_0516at 578.849 kb on + strand, within Echvi_0516at 578.900 kb on + strand, within Echvi_0516at 578.900 kb on + strand, within Echvi_0516at 578.901 kb on - strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.904 kb on + strand, within Echvi_0516at 578.905 kb on - strand, within Echvi_0516at 578.941 kb on - strandat 579.007 kb on - strandat 579.025 kb on + strandat 579.049 kb on + strandat 579.050 kb on - strandat 579.155 kb on + strandat 579.155 kb on + strandat 579.205 kb on + strandat 579.235 kb on + strandat 579.309 kb on + strand, within Echvi_0517at 579.480 kb on + strand, within Echvi_0517at 579.480 kb on + strand, within Echvi_0517at 579.481 kb on - strand, within Echvi_0517at 579.482 kb on + strand, within Echvi_0517at 579.482 kb on + strand, within Echvi_0517at 579.483 kb on - strand, within Echvi_0517at 579.483 kb on - strand, within Echvi_0517at 579.485 kb on + strand, within Echvi_0517at 579.485 kb on + strand, within Echvi_0517at 579.560 kb on - strand, within Echvi_0517at 579.666 kb on - strand, within Echvi_0517at 579.716 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.773 kb on - strand, within Echvi_0517at 579.773 kb on - strandat 579.773 kb on - strand, within Echvi_0517at 579.773 kb on - strand, within Echvi_0517at 579.859 kb on + strand, within Echvi_0517at 579.943 kb on - strand, within Echvi_0517at 579.995 kb on + strand, within Echvi_0517

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
remove
576,546 + Echvi_0515 0.50 -3.8
576,671 - Echvi_0515 0.58 +1.6
576,765 - Echvi_0515 0.63 -0.1
576,931 + Echvi_0515 0.73 -0.0
576,931 + Echvi_0515 0.73 -0.8
576,932 - Echvi_0515 0.73 +2.9
576,946 + Echvi_0515 0.74 +0.2
576,955 + Echvi_0515 0.74 +0.8
576,955 + Echvi_0515 0.74 +0.4
577,230 - +1.6
577,329 + -0.3
577,354 + +0.3
577,359 + -3.0
577,428 - +4.5
577,430 + -3.1
577,431 - +4.8
577,486 + +1.3
577,486 + -2.7
577,486 + -0.1
577,486 + +1.4
577,486 + -0.8
577,486 + +0.9
577,487 - +2.7
577,487 - +2.9
577,512 + -0.1
577,512 + -3.5
577,517 + +3.0
577,531 + +1.2
577,534 + -0.0
577,564 + +2.0
577,564 + -1.5
577,564 + -0.8
577,564 + +0.2
577,565 - +4.8
577,565 - +3.9
577,609 + -2.8
577,610 - +4.7
577,706 - Echvi_0516 0.12 +0.2
577,895 + Echvi_0516 0.24 -0.3
577,895 + Echvi_0516 0.24 -0.7
577,899 + Echvi_0516 0.25 -0.3
577,918 - Echvi_0516 0.26 +3.4
578,076 + Echvi_0516 0.36 -2.3
578,119 - Echvi_0516 0.39 +2.5
578,144 + Echvi_0516 0.40 +1.3
578,144 + Echvi_0516 0.40 -0.1
578,144 + Echvi_0516 0.40 -0.8
578,145 - Echvi_0516 0.41 +2.5
578,145 - Echvi_0516 0.41 -0.3
578,274 + Echvi_0516 0.49 +0.6
578,275 - Echvi_0516 0.49 +3.4
578,276 + Echvi_0516 0.49 -1.8
578,276 + Echvi_0516 0.49 -2.7
578,276 + Echvi_0516 0.49 -2.9
578,277 - Echvi_0516 0.49 +1.5
578,277 - Echvi_0516 0.49 +3.0
578,279 + Echvi_0516 0.49 -1.2
578,279 + Echvi_0516 0.49 +1.0
578,279 + Echvi_0516 0.49 -0.1
578,280 - Echvi_0516 0.49 +3.4
578,418 - Echvi_0516 0.58 +2.0
578,418 - Echvi_0516 0.58 +2.4
578,418 - Echvi_0516 0.58 +2.7
578,438 + Echvi_0516 0.59 -1.9
578,439 - Echvi_0516 0.60 +0.5
578,441 + Echvi_0516 0.60 -0.1
578,495 + Echvi_0516 0.63 -0.3
578,548 - Echvi_0516 0.67 +4.8
578,554 + Echvi_0516 0.67 -1.3
578,555 - Echvi_0516 0.67 +3.2
578,571 + Echvi_0516 0.68 -0.7
578,572 - Echvi_0516 0.68 +2.8
578,573 + Echvi_0516 0.68 -1.1
578,574 - Echvi_0516 0.68 +3.8
578,574 - Echvi_0516 0.68 +3.2
578,574 - Echvi_0516 0.68 +3.2
578,626 - +1.5
578,628 + Echvi_0516 0.72 +0.2
578,628 + Echvi_0516 0.72 +2.3
578,628 + Echvi_0516 0.72 -2.1
578,630 + Echvi_0516 0.72 -1.3
578,630 + Echvi_0516 0.72 -1.7
578,630 + Echvi_0516 0.72 +0.5
578,653 + Echvi_0516 0.73 -0.8
578,849 + Echvi_0516 0.86 +0.7
578,900 + Echvi_0516 0.89 -2.7
578,900 + Echvi_0516 0.89 -0.1
578,901 - Echvi_0516 0.89 +3.7
578,902 + Echvi_0516 0.89 +1.5
578,902 + Echvi_0516 0.89 -2.0
578,902 + Echvi_0516 0.89 +2.6
578,902 + Echvi_0516 0.89 +1.7
578,902 + Echvi_0516 0.89 -2.8
578,902 + Echvi_0516 0.89 -0.4
578,902 + Echvi_0516 0.89 +2.5
578,902 + Echvi_0516 0.89 -2.6
578,902 + Echvi_0516 0.89 -2.9
578,903 - Echvi_0516 0.89 +2.0
578,903 - Echvi_0516 0.89 +0.5
578,903 - Echvi_0516 0.89 -0.1
578,903 - Echvi_0516 0.89 +2.5
578,903 - Echvi_0516 0.89 -0.4
578,903 - Echvi_0516 0.89 +4.0
578,904 + Echvi_0516 0.89 -1.7
578,905 - Echvi_0516 0.90 -0.3
578,941 - +2.2
579,007 - +3.3
579,025 + +1.0
579,049 + +0.7
579,050 - +0.9
579,155 + -0.2
579,155 + +0.0
579,205 + +2.3
579,235 + +0.7
579,309 + Echvi_0517 0.10 -0.7
579,480 + Echvi_0517 0.19 +1.4
579,480 + Echvi_0517 0.19 -0.5
579,481 - Echvi_0517 0.19 +3.2
579,482 + Echvi_0517 0.19 +1.6
579,482 + Echvi_0517 0.19 +3.3
579,483 - Echvi_0517 0.19 +3.5
579,483 - Echvi_0517 0.19 +3.9
579,485 + Echvi_0517 0.19 -1.3
579,485 + Echvi_0517 0.19 +0.9
579,560 - Echvi_0517 0.23 +3.9
579,666 - Echvi_0517 0.29 +1.9
579,716 + Echvi_0517 0.31 +0.5
579,772 + Echvi_0517 0.34 +0.5
579,772 + Echvi_0517 0.34 -0.3
579,772 + Echvi_0517 0.34 +3.1
579,772 + Echvi_0517 0.34 -0.9
579,772 + Echvi_0517 0.34 -1.3
579,772 + Echvi_0517 0.34 +2.5
579,772 + Echvi_0517 0.34 -1.0
579,773 - Echvi_0517 0.34 +1.2
579,773 - +1.5
579,773 - Echvi_0517 0.34 +4.4
579,773 - Echvi_0517 0.34 +4.3
579,859 + Echvi_0517 0.39 -2.6
579,943 - Echvi_0517 0.43 +3.5
579,995 + Echvi_0517 0.46 +2.7

Or see this region's nucleotide sequence