Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0497 and Echvi_0498 are separated by 68 nucleotides Echvi_0498 and Echvi_0499 are separated by 191 nucleotides
Echvi_0497: Echvi_0497 - Beta-xylosidase, at 553,517 to 554,560
_0497
Echvi_0498: Echvi_0498 - hypothetical protein, at 554,629 to 555,726
_0498
Echvi_0499: Echvi_0499 - Glycosyl hydrolases family 43., at 555,918 to 556,859
_0499
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 553.667 kb on - strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.670 kb on - strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.684 kb on - strand, within Echvi_0497 at 553.698 kb on + strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.736 kb on + strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.787 kb on - strand, within Echvi_0497 at 553.795 kb on - strand, within Echvi_0497 at 553.799 kb on - strand, within Echvi_0497 at 553.876 kb on + strand, within Echvi_0497 at 553.886 kb on - strand, within Echvi_0497 at 553.908 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 554.057 kb on - strand, within Echvi_0497 at 554.071 kb on - strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.147 kb on - strand, within Echvi_0497 at 554.160 kb on - strand, within Echvi_0497 at 554.363 kb on + strand, within Echvi_0497 at 554.467 kb on - strand at 554.546 kb on - strand at 554.546 kb on - strand at 554.549 kb on + strand at 554.549 kb on + strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.550 kb on - strand at 554.587 kb on + strand at 554.587 kb on + strand at 554.588 kb on - strand at 554.588 kb on - strand at 554.588 kb on - strand at 554.606 kb on + strand at 554.607 kb on - strand at 554.609 kb on - strand at 554.752 kb on - strand, within Echvi_0498 at 554.777 kb on - strand, within Echvi_0498 at 554.777 kb on - strand, within Echvi_0498 at 554.825 kb on + strand, within Echvi_0498 at 554.826 kb on - strand, within Echvi_0498 at 554.829 kb on + strand, within Echvi_0498 at 554.834 kb on + strand, within Echvi_0498 at 554.930 kb on + strand, within Echvi_0498 at 555.039 kb on + strand, within Echvi_0498 at 555.075 kb on + strand, within Echvi_0498 at 555.075 kb on + strand, within Echvi_0498 at 555.119 kb on + strand, within Echvi_0498 at 555.119 kb on + strand, within Echvi_0498 at 555.122 kb on + strand, within Echvi_0498 at 555.122 kb on + strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.123 kb on - strand, within Echvi_0498 at 555.156 kb on + strand, within Echvi_0498 at 555.158 kb on + strand, within Echvi_0498 at 555.161 kb on + strand, within Echvi_0498 at 555.161 kb on + strand, within Echvi_0498 at 555.162 kb on - strand, within Echvi_0498 at 555.191 kb on + strand, within Echvi_0498 at 555.220 kb on + strand, within Echvi_0498 at 555.238 kb on - strand, within Echvi_0498 at 555.280 kb on - strand, within Echvi_0498 at 555.391 kb on + strand, within Echvi_0498 at 555.391 kb on + strand, within Echvi_0498 at 555.438 kb on + strand, within Echvi_0498 at 555.439 kb on - strand, within Echvi_0498 at 555.439 kb on - strand, within Echvi_0498 at 555.629 kb on - strand at 555.652 kb on - strand at 555.652 kb on - strand at 555.721 kb on - strand at 555.721 kb on - strand at 555.721 kb on - strand at 555.794 kb on + strand at 555.850 kb on + strand at 555.850 kb on + strand at 555.850 kb on + strand at 555.850 kb on + strand at 555.851 kb on - strand at 555.866 kb on - strand at 555.880 kb on - strand at 555.880 kb on - strand at 555.883 kb on - strand at 555.887 kb on + strand at 555.888 kb on - strand at 555.914 kb on - strand at 555.917 kb on + strand at 556.045 kb on - strand, within Echvi_0499 at 556.086 kb on - strand, within Echvi_0499 at 556.139 kb on + strand, within Echvi_0499 at 556.140 kb on - strand, within Echvi_0499 at 556.209 kb on + strand, within Echvi_0499 at 556.210 kb on - strand, within Echvi_0499 at 556.312 kb on - strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.332 kb on + strand, within Echvi_0499 at 556.333 kb on - strand, within Echvi_0499 at 556.334 kb on + strand, within Echvi_0499 at 556.334 kb on + strand, within Echvi_0499 at 556.335 kb on - strand, within Echvi_0499 at 556.352 kb on + strand, within Echvi_0499 at 556.352 kb on + strand, within Echvi_0499 at 556.353 kb on - strand, within Echvi_0499 at 556.355 kb on + strand, within Echvi_0499 at 556.402 kb on - strand, within Echvi_0499 at 556.409 kb on + strand, within Echvi_0499 at 556.409 kb on + strand, within Echvi_0499 at 556.409 kb on + strand, within Echvi_0499 at 556.410 kb on - strand, within Echvi_0499 at 556.410 kb on - strand, within Echvi_0499 at 556.416 kb on + strand, within Echvi_0499 at 556.416 kb on + strand, within Echvi_0499 at 556.416 kb on + strand, within Echvi_0499 at 556.416 kb on + strand, within Echvi_0499 at 556.417 kb on - strand, within Echvi_0499 at 556.417 kb on - strand, within Echvi_0499 at 556.421 kb on + strand, within Echvi_0499 at 556.422 kb on - strand, within Echvi_0499 at 556.422 kb on - strand, within Echvi_0499 at 556.521 kb on + strand, within Echvi_0499 at 556.522 kb on - strand, within Echvi_0499 at 556.522 kb on - strand, within Echvi_0499 at 556.697 kb on + strand, within Echvi_0499 at 556.701 kb on + strand, within Echvi_0499 at 556.701 kb on + strand, within Echvi_0499 at 556.701 kb on + strand, within Echvi_0499 at 556.702 kb on - strand, within Echvi_0499
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 553,667 - Echvi_0497 0.14 -0.7 553,669 + Echvi_0497 0.15 -1.0 553,669 + Echvi_0497 0.15 +0.2 553,670 - Echvi_0497 0.15 +1.3 553,683 + Echvi_0497 0.16 -1.0 553,683 + Echvi_0497 0.16 +1.4 553,684 - Echvi_0497 0.16 +1.7 553,698 + Echvi_0497 0.17 -0.1 553,708 - Echvi_0497 0.18 -3.1 553,708 - Echvi_0497 0.18 -0.3 553,736 + Echvi_0497 0.21 -0.1 553,783 - Echvi_0497 0.25 +0.9 553,783 - Echvi_0497 0.25 +1.4 553,787 - Echvi_0497 0.26 +0.2 553,795 - Echvi_0497 0.27 +3.0 553,799 - Echvi_0497 0.27 -0.2 553,876 + Echvi_0497 0.34 +3.2 553,886 - Echvi_0497 0.35 +2.4 553,908 + Echvi_0497 0.37 -0.8 553,950 + Echvi_0497 0.41 +1.5 553,950 + Echvi_0497 0.41 -3.4 553,951 - Echvi_0497 0.42 +1.6 553,951 - Echvi_0497 0.42 +1.3 553,951 - Echvi_0497 0.42 -0.3 553,951 - Echvi_0497 0.42 +0.9 554,057 - Echvi_0497 0.52 +0.8 554,071 - Echvi_0497 0.53 -3.2 554,146 + Echvi_0497 0.60 +2.7 554,146 + Echvi_0497 0.60 +1.1 554,146 + Echvi_0497 0.60 -0.8 554,146 + Echvi_0497 0.60 -3.6 554,147 - Echvi_0497 0.60 -2.2 554,160 - Echvi_0497 0.62 +0.3 554,363 + Echvi_0497 0.81 -0.8 554,467 - -2.2 554,546 - -2.4 554,546 - +0.8 554,549 + -3.1 554,549 + +2.5 554,550 - -2.0 554,550 - -1.5 554,550 - +1.5 554,550 - +0.1 554,587 + +0.1 554,587 + -2.9 554,588 - -0.8 554,588 - -1.9 554,588 - +0.7 554,606 + -1.7 554,607 - -2.3 554,609 - -0.3 554,752 - Echvi_0498 0.11 +2.5 554,777 - Echvi_0498 0.13 -0.0 554,777 - Echvi_0498 0.13 -2.1 554,825 + Echvi_0498 0.18 +0.7 554,826 - Echvi_0498 0.18 -0.7 554,829 + Echvi_0498 0.18 +0.2 554,834 + Echvi_0498 0.19 +0.5 554,930 + Echvi_0498 0.27 -0.6 555,039 + Echvi_0498 0.37 +2.0 555,075 + Echvi_0498 0.41 -1.6 555,075 + Echvi_0498 0.41 +0.1 555,119 + Echvi_0498 0.45 +0.8 555,119 + Echvi_0498 0.45 +1.6 555,122 + Echvi_0498 0.45 -1.4 555,122 + Echvi_0498 0.45 +1.5 555,123 - Echvi_0498 0.45 +1.3 555,123 - Echvi_0498 0.45 -0.8 555,123 - Echvi_0498 0.45 -0.7 555,123 - Echvi_0498 0.45 -0.6 555,156 + Echvi_0498 0.48 -2.0 555,158 + Echvi_0498 0.48 -0.1 555,161 + Echvi_0498 0.48 +0.9 555,161 + Echvi_0498 0.48 -0.5 555,162 - Echvi_0498 0.49 -0.1 555,191 + Echvi_0498 0.51 -2.1 555,220 + Echvi_0498 0.54 -1.0 555,238 - Echvi_0498 0.55 +1.6 555,280 - Echvi_0498 0.59 -1.2 555,391 + Echvi_0498 0.69 -1.4 555,391 + Echvi_0498 0.69 -1.2 555,438 + Echvi_0498 0.74 +2.9 555,439 - Echvi_0498 0.74 -1.4 555,439 - Echvi_0498 0.74 -2.4 555,629 - -1.6 555,652 - -0.8 555,652 - +1.3 555,721 - -1.4 555,721 - +1.5 555,721 - -2.2 555,794 + +0.8 555,850 + +0.5 555,850 + -1.7 555,850 + +0.8 555,850 + +0.2 555,851 - -0.2 555,866 - -1.3 555,880 - -1.1 555,880 - -0.9 555,883 - -2.5 555,887 + -2.4 555,888 - -0.1 555,914 - -0.3 555,917 + +1.4 556,045 - Echvi_0499 0.13 +0.5 556,086 - Echvi_0499 0.18 +0.5 556,139 + Echvi_0499 0.23 -2.4 556,140 - Echvi_0499 0.24 +1.9 556,209 + Echvi_0499 0.31 +3.0 556,210 - Echvi_0499 0.31 -0.5 556,312 - Echvi_0499 0.42 -2.2 556,332 + Echvi_0499 0.44 -0.8 556,332 + Echvi_0499 0.44 +1.1 556,332 + Echvi_0499 0.44 -1.9 556,332 + Echvi_0499 0.44 +1.3 556,332 + Echvi_0499 0.44 +0.8 556,332 + Echvi_0499 0.44 +2.8 556,332 + Echvi_0499 0.44 +1.1 556,333 - Echvi_0499 0.44 -1.0 556,334 + Echvi_0499 0.44 -0.7 556,334 + Echvi_0499 0.44 +1.5 556,335 - Echvi_0499 0.44 -1.6 556,352 + Echvi_0499 0.46 -1.2 556,352 + Echvi_0499 0.46 +0.8 556,353 - Echvi_0499 0.46 -0.3 556,355 + Echvi_0499 0.46 -1.2 556,402 - Echvi_0499 0.51 -0.5 556,409 + Echvi_0499 0.52 +0.2 556,409 + Echvi_0499 0.52 -1.5 556,409 + Echvi_0499 0.52 -1.2 556,410 - Echvi_0499 0.52 -1.2 556,410 - Echvi_0499 0.52 -1.8 556,416 + Echvi_0499 0.53 +1.5 556,416 + Echvi_0499 0.53 +0.9 556,416 + Echvi_0499 0.53 -0.8 556,416 + Echvi_0499 0.53 -1.7 556,417 - Echvi_0499 0.53 -3.5 556,417 - Echvi_0499 0.53 -1.0 556,421 + Echvi_0499 0.53 +2.7 556,422 - Echvi_0499 0.54 +0.2 556,422 - Echvi_0499 0.54 +0.4 556,521 + Echvi_0499 0.64 -2.0 556,522 - Echvi_0499 0.64 -2.0 556,522 - Echvi_0499 0.64 -2.0 556,697 + Echvi_0499 0.83 -2.6 556,701 + Echvi_0499 0.83 -0.3 556,701 + Echvi_0499 0.83 -2.0 556,701 + Echvi_0499 0.83 +1.4 556,702 - Echvi_0499 0.83 +2.0
Or see this region's nucleotide sequence