Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0494 and Echvi_0495 are separated by 72 nucleotides Echvi_0495 and Echvi_0496 are separated by 18 nucleotides
Echvi_0494: Echvi_0494 - hypothetical protein, at 550,082 to 551,230
_0494
Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301
_0495
Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318
_0496
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 550.458 kb on + strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.499 kb on + strand, within Echvi_0494 at 550.501 kb on + strand, within Echvi_0494 at 550.502 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.616 kb on + strand, within Echvi_0494 at 550.617 kb on - strand, within Echvi_0494 at 550.631 kb on - strand, within Echvi_0494 at 550.641 kb on - strand, within Echvi_0494 at 550.650 kb on - strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.654 kb on - strand, within Echvi_0494 at 550.703 kb on + strand, within Echvi_0494 at 550.744 kb on + strand, within Echvi_0494 at 550.745 kb on - strand, within Echvi_0494 at 550.810 kb on + strand, within Echvi_0494 at 550.832 kb on + strand at 550.833 kb on - strand, within Echvi_0494 at 550.865 kb on - strand, within Echvi_0494 at 550.876 kb on + strand, within Echvi_0494 at 550.983 kb on + strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 551.074 kb on + strand, within Echvi_0494 at 551.150 kb on - strand at 551.215 kb on + strand at 551.216 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.259 kb on - strand at 551.259 kb on - strand at 551.302 kb on - strand at 551.304 kb on + strand at 551.308 kb on + strand at 551.308 kb on + strand at 551.309 kb on - strand at 551.318 kb on + strand at 551.319 kb on - strand at 551.362 kb on + strand at 551.541 kb on + strand, within Echvi_0495 at 551.541 kb on + strand, within Echvi_0495 at 551.684 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.688 kb on - strand, within Echvi_0495 at 551.785 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.982 kb on + strand, within Echvi_0495 at 551.983 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.995 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.998 kb on - strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.164 kb on + strand, within Echvi_0495 at 552.166 kb on + strand, within Echvi_0495 at 552.167 kb on - strand, within Echvi_0495 at 552.324 kb on + strand at 552.324 kb on + strand at 552.325 kb on - strand at 552.387 kb on + strand at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.454 kb on - strand, within Echvi_0496 at 552.462 kb on + strand, within Echvi_0496 at 552.463 kb on - strand, within Echvi_0496 at 552.476 kb on - strand, within Echvi_0496 at 552.502 kb on + strand, within Echvi_0496 at 552.571 kb on + strand, within Echvi_0496 at 552.572 kb on - strand, within Echvi_0496 at 552.577 kb on - strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.620 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.718 kb on + strand, within Echvi_0496 at 552.719 kb on - strand, within Echvi_0496 at 552.729 kb on + strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.732 kb on + strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.937 kb on - strand, within Echvi_0496 at 552.939 kb on + strand, within Echvi_0496 at 552.940 kb on - strand, within Echvi_0496 at 552.943 kb on + strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.972 kb on + strand, within Echvi_0496 at 552.973 kb on - strand, within Echvi_0496 at 553.081 kb on + strand, within Echvi_0496 at 553.082 kb on - strand, within Echvi_0496 at 553.119 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.168 kb on - strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.233 kb on + strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 550,458 + Echvi_0494 0.33 +1.9 550,459 - Echvi_0494 0.33 -0.7 550,459 - Echvi_0494 0.33 +1.6 550,499 + Echvi_0494 0.36 +3.8 550,501 + Echvi_0494 0.36 +1.3 550,502 - Echvi_0494 0.37 -1.8 550,521 - Echvi_0494 0.38 -1.3 550,521 - Echvi_0494 0.38 -0.3 550,583 - Echvi_0494 0.44 +2.0 550,583 - Echvi_0494 0.44 +1.7 550,616 + Echvi_0494 0.46 +1.0 550,617 - Echvi_0494 0.47 +0.5 550,631 - Echvi_0494 0.48 -0.8 550,641 - Echvi_0494 0.49 -2.0 550,650 - Echvi_0494 0.49 -0.5 550,653 + Echvi_0494 0.50 -0.1 550,653 + Echvi_0494 0.50 -1.6 550,653 + Echvi_0494 0.50 +1.1 550,654 - Echvi_0494 0.50 +0.9 550,703 + Echvi_0494 0.54 -1.3 550,744 + Echvi_0494 0.58 +1.2 550,745 - Echvi_0494 0.58 -0.7 550,810 + Echvi_0494 0.63 +1.0 550,832 + +5.3 550,833 - Echvi_0494 0.65 +1.2 550,865 - Echvi_0494 0.68 +0.6 550,876 + Echvi_0494 0.69 -1.4 550,983 + Echvi_0494 0.78 +0.2 550,986 - Echvi_0494 0.79 +0.3 550,986 - Echvi_0494 0.79 -0.2 551,074 + Echvi_0494 0.86 -2.8 551,150 - -2.6 551,215 + -2.1 551,216 - -0.3 551,218 - +2.3 551,218 - +0.3 551,218 - -0.1 551,218 - +1.2 551,218 - -2.2 551,256 + +3.7 551,256 + +0.8 551,256 + -2.0 551,259 - -0.4 551,259 - +0.5 551,302 - +1.3 551,304 + -2.6 551,308 + -1.9 551,308 + +2.7 551,309 - -3.4 551,318 + -0.3 551,319 - -1.3 551,362 + -2.7 551,541 + Echvi_0495 0.24 -2.2 551,541 + Echvi_0495 0.24 -0.1 551,684 + Echvi_0495 0.38 -2.0 551,687 + Echvi_0495 0.38 +2.5 551,687 + Echvi_0495 0.38 -1.0 551,688 - Echvi_0495 0.39 +1.9 551,785 + Echvi_0495 0.48 -2.6 551,787 + Echvi_0495 0.48 -1.8 551,787 + Echvi_0495 0.48 +1.3 551,788 - Echvi_0495 0.49 +0.9 551,788 - Echvi_0495 0.49 -1.2 551,900 + Echvi_0495 0.60 +0.4 551,900 + Echvi_0495 0.60 -2.3 551,900 + Echvi_0495 0.60 -1.4 551,901 - Echvi_0495 0.60 -1.0 551,901 - Echvi_0495 0.60 -1.5 551,982 + Echvi_0495 0.68 -2.3 551,983 - Echvi_0495 0.68 -2.3 551,986 - Echvi_0495 0.68 +0.4 551,986 - Echvi_0495 0.68 -0.3 551,995 + Echvi_0495 0.69 +0.6 551,997 + Echvi_0495 0.69 +2.1 551,997 + Echvi_0495 0.69 -1.2 551,997 + Echvi_0495 0.69 -1.8 551,998 - Echvi_0495 0.70 -2.5 552,133 + Echvi_0495 0.83 -0.8 552,133 + Echvi_0495 0.83 +0.1 552,134 - Echvi_0495 0.83 -2.4 552,134 - Echvi_0495 0.83 -2.0 552,134 - Echvi_0495 0.83 +0.8 552,136 - Echvi_0495 0.83 -2.9 552,136 - Echvi_0495 0.83 -1.2 552,136 - Echvi_0495 0.83 +1.9 552,136 - Echvi_0495 0.83 -2.4 552,136 - Echvi_0495 0.83 -1.6 552,136 - Echvi_0495 0.83 +0.0 552,138 + Echvi_0495 0.84 +0.9 552,138 + Echvi_0495 0.84 -0.1 552,139 - Echvi_0495 0.84 -1.8 552,139 - Echvi_0495 0.84 -0.8 552,139 - Echvi_0495 0.84 -3.7 552,164 + Echvi_0495 0.86 -0.1 552,166 + Echvi_0495 0.86 -0.9 552,167 - Echvi_0495 0.86 -0.7 552,324 + +1.2 552,324 + +1.2 552,325 - -2.8 552,387 + +1.7 552,453 + Echvi_0496 0.13 -0.5 552,453 + Echvi_0496 0.13 +0.2 552,453 + Echvi_0496 0.13 -1.1 552,454 - Echvi_0496 0.13 +1.0 552,462 + Echvi_0496 0.14 +0.5 552,463 - Echvi_0496 0.14 -1.0 552,476 - Echvi_0496 0.16 -1.9 552,502 + Echvi_0496 0.18 +1.3 552,571 + Echvi_0496 0.25 -0.1 552,572 - Echvi_0496 0.25 -0.4 552,577 - Echvi_0496 0.26 -2.9 552,618 + Echvi_0496 0.30 +0.9 552,618 + Echvi_0496 0.30 +2.9 552,618 + Echvi_0496 0.30 -2.9 552,619 - Echvi_0496 0.30 +3.0 552,619 - Echvi_0496 0.30 +1.3 552,620 + Echvi_0496 0.30 -0.4 552,709 + Echvi_0496 0.39 -0.2 552,709 + Echvi_0496 0.39 -0.8 552,709 + Echvi_0496 0.39 -0.3 552,709 + Echvi_0496 0.39 -2.5 552,710 - Echvi_0496 0.39 -1.5 552,710 - Echvi_0496 0.39 +1.0 552,718 + Echvi_0496 0.40 -0.3 552,719 - Echvi_0496 0.40 -0.5 552,729 + Echvi_0496 0.41 -2.1 552,730 - Echvi_0496 0.41 -1.6 552,730 - Echvi_0496 0.41 -0.5 552,732 + Echvi_0496 0.41 +0.9 552,733 - Echvi_0496 0.41 +0.7 552,733 - Echvi_0496 0.41 +0.2 552,733 - Echvi_0496 0.41 +0.1 552,733 - Echvi_0496 0.41 -3.0 552,929 - Echvi_0496 0.61 +1.2 552,929 - Echvi_0496 0.61 -0.7 552,930 + Echvi_0496 0.61 +0.5 552,930 + Echvi_0496 0.61 +1.8 552,931 - Echvi_0496 0.61 -0.9 552,931 - Echvi_0496 0.61 +0.8 552,936 + Echvi_0496 0.62 +0.9 552,936 + Echvi_0496 0.62 -3.1 552,936 + Echvi_0496 0.62 -1.7 552,936 + Echvi_0496 0.62 -2.0 552,936 + Echvi_0496 0.62 -2.6 552,936 + Echvi_0496 0.62 -0.9 552,937 - Echvi_0496 0.62 +0.2 552,939 + Echvi_0496 0.62 +0.9 552,940 - Echvi_0496 0.62 +0.9 552,943 + Echvi_0496 0.62 +1.9 552,944 - Echvi_0496 0.62 -1.4 552,944 - Echvi_0496 0.62 -1.7 552,972 + Echvi_0496 0.65 -2.4 552,973 - Echvi_0496 0.65 +0.2 553,081 + Echvi_0496 0.76 +1.3 553,082 - Echvi_0496 0.76 +1.3 553,119 + Echvi_0496 0.80 +2.3 553,167 + Echvi_0496 0.85 -2.0 553,167 + Echvi_0496 0.85 +2.2 553,167 + Echvi_0496 0.85 -0.5 553,168 - Echvi_0496 0.85 +3.0 553,212 + Echvi_0496 0.89 +0.1 553,212 + Echvi_0496 0.89 +1.5 553,212 + Echvi_0496 0.89 -0.1 553,213 - Echvi_0496 0.89 -1.9 553,213 - Echvi_0496 0.89 -1.5 553,233 + -0.2 553,234 - +1.5 553,234 - -1.6 553,234 - -0.8 553,268 - -2.5
Or see this region's nucleotide sequence