Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0484

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0483 and Echvi_0484 are separated by 34 nucleotidesEchvi_0484 and Echvi_0485 are separated by 270 nucleotides Echvi_0483: Echvi_0483 - hypothetical protein, at 531,703 to 532,836 _0483 Echvi_0484: Echvi_0484 - hypothetical protein, at 532,871 to 532,999 _0484 Echvi_0485: Echvi_0485 - Beta-galactosidase/beta-glucuronidase, at 533,270 to 536,386 _0485 Position (kb) 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 531.916 kb on - strand, within Echvi_0483at 531.973 kb on - strand, within Echvi_0483at 531.986 kb on - strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.004 kb on + strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.005 kb on - strand, within Echvi_0483at 532.057 kb on + strand, within Echvi_0483at 532.058 kb on - strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.100 kb on + strand, within Echvi_0483at 532.101 kb on - strand, within Echvi_0483at 532.101 kb on - strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.104 kb on + strand, within Echvi_0483at 532.105 kb on - strand, within Echvi_0483at 532.105 kb on - strand, within Echvi_0483at 532.110 kb on - strand, within Echvi_0483at 532.116 kb on + strand, within Echvi_0483at 532.116 kb on + strand, within Echvi_0483at 532.122 kb on - strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.181 kb on + strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.182 kb on - strand, within Echvi_0483at 532.211 kb on + strand, within Echvi_0483at 532.313 kb on + strand, within Echvi_0483at 532.314 kb on - strand, within Echvi_0483at 532.350 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.469 kb on - strand, within Echvi_0483at 532.483 kb on + strand, within Echvi_0483at 532.529 kb on + strand, within Echvi_0483at 532.534 kb on + strand, within Echvi_0483at 532.676 kb on + strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.679 kb on + strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.719 kb on + strand, within Echvi_0483at 532.806 kb on + strandat 532.812 kb on + strandat 532.812 kb on + strandat 532.814 kb on + strandat 532.847 kb on + strandat 532.897 kb on + strand, within Echvi_0484at 532.915 kb on - strand, within Echvi_0484at 532.998 kb on - strandat 533.022 kb on + strandat 533.063 kb on + strandat 533.064 kb on - strandat 533.064 kb on - strandat 533.067 kb on - strandat 533.135 kb on + strandat 533.139 kb on + strandat 533.140 kb on - strandat 533.202 kb on + strandat 533.209 kb on + strandat 533.210 kb on - strandat 533.249 kb on - strandat 533.256 kb on + strandat 533.292 kb on + strandat 533.292 kb on + strandat 533.293 kb on - strandat 533.299 kb on - strandat 533.356 kb on + strandat 533.357 kb on - strandat 533.416 kb on + strandat 533.417 kb on - strandat 533.425 kb on + strandat 533.426 kb on - strandat 533.426 kb on - strandat 533.504 kb on + strandat 533.504 kb on + strandat 533.505 kb on - strandat 533.534 kb on - strandat 533.559 kb on - strandat 533.595 kb on + strand, within Echvi_0485at 533.595 kb on + strand, within Echvi_0485at 533.596 kb on - strand, within Echvi_0485at 533.631 kb on + strand, within Echvi_0485at 533.631 kb on + strand, within Echvi_0485at 533.632 kb on - strand, within Echvi_0485at 533.691 kb on + strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.694 kb on + strand, within Echvi_0485at 533.789 kb on + strand, within Echvi_0485at 533.820 kb on + strand, within Echvi_0485at 533.859 kb on + strand, within Echvi_0485at 533.877 kb on - strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.966 kb on - strand, within Echvi_0485at 533.966 kb on - strand, within Echvi_0485

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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531,916 - Echvi_0483 0.19 -0.8
531,973 - Echvi_0483 0.24 -1.1
531,986 - Echvi_0483 0.25 +0.7
532,004 + Echvi_0483 0.27 +4.1
532,004 + Echvi_0483 0.27 -0.1
532,004 + Echvi_0483 0.27 -3.6
532,004 + Echvi_0483 0.27 -1.2
532,005 - Echvi_0483 0.27 +1.3
532,005 - Echvi_0483 0.27 -1.8
532,005 - Echvi_0483 0.27 +0.7
532,057 + Echvi_0483 0.31 -0.1
532,058 - Echvi_0483 0.31 +2.5
532,100 + Echvi_0483 0.35 +1.0
532,100 + Echvi_0483 0.35 -0.1
532,100 + Echvi_0483 0.35 -1.8
532,101 - Echvi_0483 0.35 -0.4
532,101 - Echvi_0483 0.35 -1.3
532,104 + Echvi_0483 0.35 -0.0
532,104 + Echvi_0483 0.35 +1.3
532,104 + Echvi_0483 0.35 -3.3
532,105 - Echvi_0483 0.35 -3.1
532,105 - Echvi_0483 0.35 +0.7
532,110 - Echvi_0483 0.36 -0.9
532,116 + Echvi_0483 0.36 +1.7
532,116 + Echvi_0483 0.36 -1.0
532,122 - Echvi_0483 0.37 +0.2
532,181 + Echvi_0483 0.42 -2.1
532,181 + Echvi_0483 0.42 +1.2
532,181 + Echvi_0483 0.42 -2.9
532,182 - Echvi_0483 0.42 +0.3
532,182 - Echvi_0483 0.42 -1.1
532,182 - Echvi_0483 0.42 -1.6
532,211 + Echvi_0483 0.45 -1.2
532,313 + Echvi_0483 0.54 -1.2
532,314 - Echvi_0483 0.54 +0.2
532,350 + Echvi_0483 0.57 -0.6
532,352 + Echvi_0483 0.57 +1.0
532,352 + Echvi_0483 0.57 -1.5
532,353 - Echvi_0483 0.57 -1.6
532,353 - Echvi_0483 0.57 -1.3
532,469 - Echvi_0483 0.68 -1.6
532,483 + Echvi_0483 0.69 -0.7
532,529 + Echvi_0483 0.73 +1.9
532,534 + Echvi_0483 0.73 -2.2
532,676 + Echvi_0483 0.86 +1.8
532,677 - Echvi_0483 0.86 -0.5
532,677 - Echvi_0483 0.86 -0.2
532,677 - Echvi_0483 0.86 -0.1
532,677 - Echvi_0483 0.86 +0.9
532,679 + Echvi_0483 0.86 -1.9
532,680 - Echvi_0483 0.86 +1.8
532,680 - Echvi_0483 0.86 +0.9
532,680 - Echvi_0483 0.86 -0.7
532,719 + Echvi_0483 0.90 +1.1
532,806 + +0.9
532,812 + -2.4
532,812 + -1.3
532,814 + -0.6
532,847 + +1.9
532,897 + Echvi_0484 0.20 -0.5
532,915 - Echvi_0484 0.34 -3.4
532,998 - +1.7
533,022 + -2.9
533,063 + +0.2
533,064 - -2.4
533,064 - +1.0
533,067 - -0.1
533,135 + -0.4
533,139 + -0.4
533,140 - -0.3
533,202 + +0.2
533,209 + +0.4
533,210 - +0.2
533,249 - -2.6
533,256 + +0.9
533,292 + +0.5
533,292 + +1.1
533,293 - +1.1
533,299 - +0.4
533,356 + -1.9
533,357 - +0.3
533,416 + -2.4
533,417 - -0.3
533,425 + +0.9
533,426 - -0.8
533,426 - -0.2
533,504 + -0.3
533,504 + -0.8
533,505 - -2.3
533,534 - +0.2
533,559 - -2.5
533,595 + Echvi_0485 0.10 -0.6
533,595 + Echvi_0485 0.10 -0.6
533,596 - Echvi_0485 0.10 -2.3
533,631 + Echvi_0485 0.12 -2.8
533,631 + Echvi_0485 0.12 -0.5
533,632 - Echvi_0485 0.12 -1.7
533,691 + Echvi_0485 0.14 +1.5
533,692 - Echvi_0485 0.14 -1.8
533,692 - Echvi_0485 0.14 -2.3
533,692 - Echvi_0485 0.14 -0.9
533,694 + Echvi_0485 0.14 -2.6
533,789 + Echvi_0485 0.17 +0.5
533,820 + Echvi_0485 0.18 +0.5
533,859 + Echvi_0485 0.19 +1.2
533,877 - Echvi_0485 0.19 +3.9
533,965 + Echvi_0485 0.22 -1.3
533,965 + Echvi_0485 0.22 +3.1
533,965 + Echvi_0485 0.22 +0.8
533,966 - Echvi_0485 0.22 -1.8
533,966 - Echvi_0485 0.22 -1.7

Or see this region's nucleotide sequence