Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0451

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0449 and Echvi_0450 are separated by 80 nucleotidesEchvi_0450 and Echvi_0451 are separated by 120 nucleotidesEchvi_0451 and Echvi_0452 are separated by 8 nucleotidesEchvi_0452 and Echvi_0453 are separated by 199 nucleotides Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480 _0449 Echvi_0450: Echvi_0450 - hypothetical protein, at 493,561 to 494,091 _0450 Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504 _0451 Echvi_0452: Echvi_0452 - hypothetical protein, at 495,513 to 496,055 _0452 Echvi_0453: Echvi_0453 - RNA polymerase sigma factor, sigma-70 family, at 496,255 to 496,812 _0453 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 493.246 kb on + strand, within Echvi_0449at 493.247 kb on - strand, within Echvi_0449at 493.276 kb on + strand, within Echvi_0449at 493.286 kb on - strand, within Echvi_0449at 493.432 kb on + strandat 493.432 kb on + strandat 493.433 kb on - strandat 493.433 kb on - strandat 493.435 kb on + strandat 493.435 kb on + strandat 493.436 kb on - strandat 493.437 kb on + strandat 493.438 kb on - strandat 493.451 kb on + strandat 493.451 kb on + strandat 493.451 kb on + strandat 493.452 kb on - strandat 493.452 kb on - strandat 493.475 kb on + strandat 493.476 kb on - strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.488 kb on - strandat 493.490 kb on + strandat 493.491 kb on - strandat 493.527 kb on - strandat 493.550 kb on + strandat 493.563 kb on - strandat 493.661 kb on - strand, within Echvi_0450at 493.702 kb on - strand, within Echvi_0450at 493.717 kb on + strand, within Echvi_0450at 493.718 kb on - strand, within Echvi_0450at 493.825 kb on - strand, within Echvi_0450at 493.863 kb on + strand, within Echvi_0450at 493.919 kb on + strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.963 kb on + strand, within Echvi_0450at 493.963 kb on + strand, within Echvi_0450at 493.964 kb on - strand, within Echvi_0450at 494.074 kb on + strandat 494.116 kb on + strandat 494.126 kb on + strandat 494.128 kb on + strandat 494.177 kb on - strandat 494.210 kb on + strandat 494.213 kb on + strandat 494.220 kb on + strandat 494.220 kb on + strandat 494.238 kb on - strandat 494.243 kb on - strandat 494.271 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.292 kb on + strandat 494.348 kb on + strand, within Echvi_0451at 494.349 kb on - strand, within Echvi_0451at 494.407 kb on - strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.409 kb on - strand, within Echvi_0451at 494.409 kb on - strand, within Echvi_0451at 494.507 kb on + strand, within Echvi_0451at 494.510 kb on + strand, within Echvi_0451at 494.620 kb on + strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.625 kb on - strand, within Echvi_0451at 494.637 kb on + strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.692 kb on + strand, within Echvi_0451at 494.693 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.759 kb on + strand, within Echvi_0451at 494.772 kb on + strand, within Echvi_0451at 494.804 kb on + strand, within Echvi_0451at 494.814 kb on + strand, within Echvi_0451at 494.815 kb on - strand, within Echvi_0451at 494.817 kb on + strand, within Echvi_0451at 494.824 kb on + strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.826 kb on + strand, within Echvi_0451at 494.959 kb on + strand, within Echvi_0451at 495.086 kb on - strand, within Echvi_0451at 495.090 kb on + strand, within Echvi_0451at 495.190 kb on + strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.218 kb on - strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.221 kb on + strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.222 kb on - strand, within Echvi_0451at 495.224 kb on - strand, within Echvi_0451at 495.264 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.309 kb on - strand, within Echvi_0451at 495.355 kb on - strand, within Echvi_0451at 495.424 kb on - strandat 495.507 kb on + strandat 495.519 kb on - strandat 495.589 kb on + strand, within Echvi_0452at 495.745 kb on + strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.820 kb on + strand, within Echvi_0452at 495.889 kb on + strand, within Echvi_0452at 495.899 kb on + strand, within Echvi_0452at 495.900 kb on - strand, within Echvi_0452at 495.907 kb on - strand, within Echvi_0452at 495.925 kb on + strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.972 kb on - strand, within Echvi_0452at 496.124 kb on + strandat 496.156 kb on + strandat 496.156 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.192 kb on + strandat 496.192 kb on + strandat 496.230 kb on + strandat 496.238 kb on - strandat 496.252 kb on + strandat 496.287 kb on - strandat 496.290 kb on + strandat 496.291 kb on - strandat 496.291 kb on - strandat 496.321 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.324 kb on - strand, within Echvi_0453at 496.363 kb on + strand, within Echvi_0453at 496.368 kb on + strand, within Echvi_0453at 496.380 kb on + strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.413 kb on - strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.433 kb on + strand, within Echvi_0453at 496.497 kb on + strand, within Echvi_0453

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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493,246 + Echvi_0449 0.79 -3.6
493,247 - Echvi_0449 0.79 -2.0
493,276 + Echvi_0449 0.82 +3.9
493,286 - Echvi_0449 0.83 -0.1
493,432 + -0.8
493,432 + -3.2
493,433 - +0.4
493,433 - -1.8
493,435 + -2.3
493,435 + -0.7
493,436 - +1.1
493,437 + -0.5
493,438 - -3.5
493,451 + +0.5
493,451 + -3.1
493,451 + +0.9
493,452 - +1.9
493,452 - +0.9
493,475 + +0.9
493,476 - -2.7
493,487 + -2.3
493,487 + -2.2
493,487 + +0.1
493,487 + -0.1
493,488 - -3.2
493,490 + -0.1
493,491 - +1.2
493,527 - +0.3
493,550 + -2.3
493,563 - -0.8
493,661 - Echvi_0450 0.19 +2.5
493,702 - Echvi_0450 0.27 +0.1
493,717 + Echvi_0450 0.29 -1.7
493,718 - Echvi_0450 0.30 +1.5
493,825 - Echvi_0450 0.50 -1.0
493,863 + Echvi_0450 0.57 +0.0
493,919 + Echvi_0450 0.67 -3.4
493,920 - Echvi_0450 0.68 -1.7
493,920 - Echvi_0450 0.68 -1.3
493,920 - Echvi_0450 0.68 +0.5
493,963 + Echvi_0450 0.76 +0.2
493,963 + Echvi_0450 0.76 -1.0
493,964 - Echvi_0450 0.76 -0.9
494,074 + +0.6
494,116 + -0.3
494,126 + -0.5
494,128 + -1.1
494,177 - -3.1
494,210 + -0.1
494,213 + -1.3
494,220 + +0.6
494,220 + +0.8
494,238 - +1.2
494,243 - -0.5
494,271 + -0.7
494,273 + -1.3
494,273 + +3.3
494,273 + -1.6
494,273 + +0.9
494,292 + +0.8
494,348 + Echvi_0451 0.11 -2.4
494,349 - Echvi_0451 0.11 +0.9
494,407 - Echvi_0451 0.15 -2.2
494,408 + Echvi_0451 0.15 -0.1
494,408 + Echvi_0451 0.15 +0.2
494,408 + Echvi_0451 0.15 -0.7
494,408 + Echvi_0451 0.15 -1.8
494,409 - Echvi_0451 0.15 -1.0
494,409 - Echvi_0451 0.15 +0.7
494,507 + Echvi_0451 0.23 -3.7
494,510 + Echvi_0451 0.23 +2.0
494,620 + Echvi_0451 0.32 +0.8
494,621 - Echvi_0451 0.32 +0.7
494,621 - Echvi_0451 0.32 -1.6
494,625 - Echvi_0451 0.32 -2.0
494,637 + Echvi_0451 0.33 -1.6
494,683 - Echvi_0451 0.36 -1.0
494,683 - Echvi_0451 0.36 -0.5
494,685 + Echvi_0451 0.37 -1.0
494,685 + Echvi_0451 0.37 -0.1
494,692 + Echvi_0451 0.37 -2.1
494,693 - Echvi_0451 0.37 +0.2
494,698 - Echvi_0451 0.38 -2.4
494,698 - Echvi_0451 0.38 +1.5
494,759 + Echvi_0451 0.42 +1.9
494,772 + Echvi_0451 0.43 -2.6
494,804 + Echvi_0451 0.46 +0.3
494,814 + Echvi_0451 0.47 +2.5
494,815 - Echvi_0451 0.47 -1.0
494,817 + Echvi_0451 0.47 +0.0
494,824 + Echvi_0451 0.47 +1.3
494,825 - Echvi_0451 0.47 +0.0
494,825 - Echvi_0451 0.47 +1.4
494,825 - Echvi_0451 0.47 +3.5
494,826 + Echvi_0451 0.47 -2.6
494,959 + Echvi_0451 0.58 +1.1
495,086 - Echvi_0451 0.68 -1.4
495,090 + Echvi_0451 0.68 +0.7
495,190 + Echvi_0451 0.76 +0.3
495,218 - Echvi_0451 0.78 +0.9
495,218 - Echvi_0451 0.78 +1.0
495,218 - Echvi_0451 0.78 -1.2
495,218 - Echvi_0451 0.78 -3.2
495,221 + Echvi_0451 0.78 +1.3
495,221 + Echvi_0451 0.78 +1.6
495,221 + Echvi_0451 0.78 -0.7
495,222 - Echvi_0451 0.78 -0.1
495,222 - Echvi_0451 0.78 -3.2
495,222 - Echvi_0451 0.78 +1.9
495,224 - Echvi_0451 0.78 -3.1
495,264 + Echvi_0451 0.81 -1.2
495,308 + Echvi_0451 0.85 +0.9
495,308 + Echvi_0451 0.85 -1.7
495,308 + Echvi_0451 0.85 -1.8
495,308 + Echvi_0451 0.85 -2.2
495,309 - Echvi_0451 0.85 +0.5
495,355 - Echvi_0451 0.88 +2.3
495,424 - -2.9
495,507 + -0.9
495,519 - +0.2
495,589 + Echvi_0452 0.14 -1.2
495,745 + Echvi_0452 0.43 -1.1
495,787 - Echvi_0452 0.50 -2.0
495,787 - Echvi_0452 0.50 -2.0
495,788 + Echvi_0452 0.51 +0.0
495,788 + Echvi_0452 0.51 +0.7
495,789 - Echvi_0452 0.51 -0.6
495,789 - Echvi_0452 0.51 -2.4
495,820 + Echvi_0452 0.57 +2.5
495,889 + Echvi_0452 0.69 +0.5
495,899 + Echvi_0452 0.71 -0.3
495,900 - Echvi_0452 0.71 -0.7
495,907 - Echvi_0452 0.73 -0.8
495,925 + Echvi_0452 0.76 +1.2
495,926 - Echvi_0452 0.76 -0.7
495,926 - Echvi_0452 0.76 +0.0
495,972 - Echvi_0452 0.85 -1.7
496,124 + +0.4
496,156 + +0.7
496,156 + +0.4
496,158 + +5.0
496,158 + -2.6
496,158 + -1.2
496,159 - -0.1
496,159 - -3.0
496,192 + -1.9
496,192 + -1.7
496,230 + +1.6
496,238 - -2.1
496,252 + -0.6
496,287 - -0.1
496,290 + +0.5
496,291 - -0.7
496,291 - -2.0
496,321 + Echvi_0453 0.12 +2.5
496,323 + Echvi_0453 0.12 +1.9
496,323 + Echvi_0453 0.12 +0.7
496,324 - Echvi_0453 0.12 -0.1
496,363 + Echvi_0453 0.19 -0.7
496,368 + Echvi_0453 0.20 +2.2
496,380 + Echvi_0453 0.22 -0.5
496,381 - Echvi_0453 0.23 +1.2
496,381 - Echvi_0453 0.23 +0.3
496,381 - Echvi_0453 0.23 +0.4
496,381 - Echvi_0453 0.23 -1.2
496,412 + Echvi_0453 0.28 -2.2
496,412 + Echvi_0453 0.28 +0.5
496,413 - Echvi_0453 0.28 -0.1
496,415 + Echvi_0453 0.29 +1.5
496,415 + Echvi_0453 0.29 +1.3
496,416 - Echvi_0453 0.29 +1.2
496,416 - Echvi_0453 0.29 -0.0
496,416 - Echvi_0453 0.29 -0.1
496,433 + Echvi_0453 0.32 -1.1
496,497 + Echvi_0453 0.43 +0.2

Or see this region's nucleotide sequence