Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0430

Experiment: m.b. D-Cycloserine 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0427 and Echvi_0428 are separated by 81 nucleotidesEchvi_0428 and Echvi_0429 are separated by 163 nucleotidesEchvi_0429 and Echvi_0430 are separated by 33 nucleotidesEchvi_0430 and Echvi_0431 are separated by 309 nucleotidesEchvi_0431 and Echvi_0432 are separated by 15 nucleotides Echvi_0427: Echvi_0427 - hypothetical protein, at 471,518 to 471,616 _0427 Echvi_0428: Echvi_0428 - Helix-turn-helix., at 471,698 to 471,904 _0428 Echvi_0429: Echvi_0429 - hypothetical protein, at 472,068 to 472,493 _0429 Echvi_0430: Echvi_0430 - hypothetical protein, at 472,527 to 473,333 _0430 Echvi_0431: Echvi_0431 - hypothetical protein, at 473,643 to 473,750 _0431 Echvi_0432: Echvi_0432 - hypothetical protein, at 473,766 to 474,407 _0432 Position (kb) 472 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 471.548 kb on + strand, within Echvi_0427at 471.705 kb on + strandat 471.705 kb on + strandat 471.714 kb on + strandat 471.759 kb on + strand, within Echvi_0428at 471.759 kb on + strand, within Echvi_0428at 471.760 kb on - strand, within Echvi_0428at 471.767 kb on - strand, within Echvi_0428at 471.768 kb on + strand, within Echvi_0428at 471.788 kb on + strand, within Echvi_0428at 471.788 kb on + strand, within Echvi_0428at 471.789 kb on - strand, within Echvi_0428at 471.789 kb on - strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.844 kb on + strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.845 kb on - strand, within Echvi_0428at 471.847 kb on + strand, within Echvi_0428at 471.847 kb on + strand, within Echvi_0428at 471.848 kb on - strand, within Echvi_0428at 471.848 kb on - strand, within Echvi_0428at 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.904 kb on + strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.905 kb on - strandat 471.908 kb on + strandat 471.909 kb on - strandat 471.909 kb on - strandat 471.909 kb on - strandat 471.934 kb on + strandat 471.970 kb on + strandat 471.987 kb on - strandat 472.067 kb on + strandat 472.067 kb on + strandat 472.091 kb on + strandat 472.325 kb on + strand, within Echvi_0429at 472.325 kb on + strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.326 kb on - strand, within Echvi_0429at 472.429 kb on - strand, within Echvi_0429at 472.513 kb on - strandat 472.525 kb on + strandat 472.630 kb on + strand, within Echvi_0430at 472.630 kb on + strand, within Echvi_0430at 472.679 kb on - strand, within Echvi_0430at 472.696 kb on + strand, within Echvi_0430at 472.697 kb on - strand, within Echvi_0430at 472.703 kb on + strand, within Echvi_0430at 472.704 kb on - strand, within Echvi_0430at 472.706 kb on - strand, within Echvi_0430at 472.733 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.740 kb on + strand, within Echvi_0430at 472.741 kb on - strand, within Echvi_0430at 472.741 kb on - strand, within Echvi_0430at 472.742 kb on + strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.743 kb on - strand, within Echvi_0430at 472.767 kb on - strand, within Echvi_0430at 472.787 kb on - strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.798 kb on + strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.799 kb on - strand, within Echvi_0430at 472.826 kb on - strand, within Echvi_0430at 472.838 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.870 kb on + strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.871 kb on - strand, within Echvi_0430at 472.905 kb on + strand, within Echvi_0430at 472.937 kb on + strand, within Echvi_0430at 472.937 kb on + strand, within Echvi_0430at 472.942 kb on + strand, within Echvi_0430at 472.943 kb on - strand, within Echvi_0430at 472.994 kb on + strand, within Echvi_0430at 472.995 kb on - strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.998 kb on + strand, within Echvi_0430at 472.999 kb on - strand, within Echvi_0430at 472.999 kb on - strand, within Echvi_0430at 473.026 kb on - strand, within Echvi_0430at 473.037 kb on - strand, within Echvi_0430at 473.038 kb on + strand, within Echvi_0430at 473.039 kb on - strand, within Echvi_0430at 473.039 kb on - strand, within Echvi_0430at 473.048 kb on + strand, within Echvi_0430at 473.049 kb on - strand, within Echvi_0430at 473.049 kb on - strand, within Echvi_0430at 473.087 kb on + strand, within Echvi_0430at 473.113 kb on + strand, within Echvi_0430at 473.159 kb on + strand, within Echvi_0430at 473.298 kb on - strandat 473.429 kb on - strandat 473.443 kb on - strandat 473.484 kb on + strandat 473.564 kb on + strandat 473.565 kb on - strandat 473.611 kb on + strandat 473.611 kb on + strandat 473.611 kb on + strandat 473.612 kb on - strandat 473.612 kb on - strandat 473.613 kb on + strandat 473.620 kb on - strandat 473.620 kb on - strandat 473.650 kb on + strandat 473.680 kb on + strand, within Echvi_0431at 473.680 kb on + strand, within Echvi_0431at 473.680 kb on + strand, within Echvi_0431at 473.681 kb on - strand, within Echvi_0431at 473.681 kb on - strand, within Echvi_0431at 473.687 kb on + strand, within Echvi_0431at 473.688 kb on - strand, within Echvi_0431at 473.717 kb on + strand, within Echvi_0431at 473.752 kb on + strandat 473.761 kb on - strandat 473.765 kb on + strandat 473.766 kb on - strandat 473.766 kb on - strandat 473.770 kb on + strandat 473.850 kb on + strand, within Echvi_0432at 473.850 kb on + strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.926 kb on - strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.962 kb on + strand, within Echvi_0432at 473.993 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.023 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.100 kb on + strand, within Echvi_0432at 474.142 kb on + strand, within Echvi_0432at 474.167 kb on + strand, within Echvi_0432at 474.168 kb on - strand, within Echvi_0432at 474.229 kb on + strand, within Echvi_0432at 474.321 kb on + strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
remove
471,548 + Echvi_0427 0.30 -1.3
471,705 + -1.8
471,705 + -0.4
471,714 + +0.6
471,759 + Echvi_0428 0.29 +1.6
471,759 + Echvi_0428 0.29 -0.1
471,760 - Echvi_0428 0.30 +1.2
471,767 - Echvi_0428 0.33 -0.1
471,768 + Echvi_0428 0.34 +1.2
471,788 + Echvi_0428 0.43 +2.8
471,788 + Echvi_0428 0.43 +1.0
471,789 - Echvi_0428 0.44 +1.0
471,789 - Echvi_0428 0.44 +0.8
471,844 + Echvi_0428 0.71 +2.2
471,844 + Echvi_0428 0.71 -0.2
471,844 + Echvi_0428 0.71 +2.3
471,844 + Echvi_0428 0.71 -2.0
471,845 - Echvi_0428 0.71 -3.0
471,845 - Echvi_0428 0.71 +1.0
471,845 - Echvi_0428 0.71 -1.1
471,847 + Echvi_0428 0.72 +1.6
471,847 + Echvi_0428 0.72 -1.5
471,848 - Echvi_0428 0.72 +0.7
471,848 - Echvi_0428 0.72 +4.1
471,904 + -0.6
471,904 + -1.9
471,904 + +1.7
471,904 + -1.2
471,904 + +4.1
471,905 - +1.9
471,905 - -0.5
471,905 - -1.4
471,905 - +1.8
471,908 + +0.6
471,909 - -0.1
471,909 - -2.8
471,909 - -0.1
471,934 + +1.4
471,970 + -2.3
471,987 - +2.3
472,067 + -2.9
472,067 + +1.4
472,091 + -0.5
472,325 + Echvi_0429 0.60 +0.1
472,325 + Echvi_0429 0.60 -0.5
472,326 - Echvi_0429 0.61 -1.3
472,326 - Echvi_0429 0.61 -1.0
472,326 - Echvi_0429 0.61 +0.5
472,326 - Echvi_0429 0.61 -2.9
472,429 - Echvi_0429 0.85 +0.6
472,513 - +0.3
472,525 + +0.8
472,630 + Echvi_0430 0.13 +0.5
472,630 + Echvi_0430 0.13 -2.5
472,679 - Echvi_0430 0.19 +1.3
472,696 + Echvi_0430 0.21 -1.4
472,697 - Echvi_0430 0.21 -1.4
472,703 + Echvi_0430 0.22 -0.1
472,704 - Echvi_0430 0.22 +0.5
472,706 - Echvi_0430 0.22 +2.3
472,733 + Echvi_0430 0.26 +0.8
472,740 + Echvi_0430 0.26 +2.9
472,740 + Echvi_0430 0.26 +1.2
472,740 + Echvi_0430 0.26 +2.2
472,740 + Echvi_0430 0.26 +1.5
472,741 - Echvi_0430 0.27 +3.0
472,741 - Echvi_0430 0.27 +2.6
472,742 + Echvi_0430 0.27 -1.0
472,743 - Echvi_0430 0.27 +1.9
472,743 - Echvi_0430 0.27 -1.4
472,743 - Echvi_0430 0.27 +2.3
472,743 - Echvi_0430 0.27 -0.0
472,767 - Echvi_0430 0.30 +0.9
472,787 - Echvi_0430 0.32 -2.7
472,798 + Echvi_0430 0.34 -1.3
472,798 + Echvi_0430 0.34 -1.7
472,798 + Echvi_0430 0.34 -0.5
472,799 - Echvi_0430 0.34 +0.9
472,799 - Echvi_0430 0.34 -0.8
472,799 - Echvi_0430 0.34 +1.6
472,799 - Echvi_0430 0.34 +3.0
472,826 - Echvi_0430 0.37 -0.9
472,838 + Echvi_0430 0.39 -3.5
472,870 + Echvi_0430 0.43 +2.5
472,870 + Echvi_0430 0.43 +1.9
472,871 - Echvi_0430 0.43 +0.5
472,871 - Echvi_0430 0.43 +1.5
472,871 - Echvi_0430 0.43 -0.7
472,871 - Echvi_0430 0.43 -0.3
472,871 - Echvi_0430 0.43 +1.7
472,905 + Echvi_0430 0.47 -1.3
472,937 + Echvi_0430 0.51 -3.6
472,937 + Echvi_0430 0.51 +0.8
472,942 + Echvi_0430 0.51 -2.4
472,943 - Echvi_0430 0.52 -1.5
472,994 + Echvi_0430 0.58 +0.4
472,995 - Echvi_0430 0.58 +3.2
472,998 + Echvi_0430 0.58 -0.5
472,998 + Echvi_0430 0.58 -0.0
472,998 + Echvi_0430 0.58 +0.3
472,999 - Echvi_0430 0.58 +0.9
472,999 - Echvi_0430 0.58 +1.5
473,026 - Echvi_0430 0.62 -1.6
473,037 - Echvi_0430 0.63 +0.6
473,038 + Echvi_0430 0.63 -0.9
473,039 - Echvi_0430 0.63 +0.1
473,039 - Echvi_0430 0.63 -0.6
473,048 + Echvi_0430 0.65 +0.5
473,049 - Echvi_0430 0.65 -2.5
473,049 - Echvi_0430 0.65 +3.1
473,087 + Echvi_0430 0.69 +2.2
473,113 + Echvi_0430 0.73 +0.6
473,159 + Echvi_0430 0.78 -0.2
473,298 - +1.6
473,429 - -2.5
473,443 - -2.6
473,484 + -2.2
473,564 + -2.4
473,565 - -2.9
473,611 + -1.6
473,611 + +2.4
473,611 + -2.2
473,612 - +0.4
473,612 - -2.2
473,613 + -1.3
473,620 - -1.9
473,620 - -2.8
473,650 + +3.1
473,680 + Echvi_0431 0.34 +2.3
473,680 + Echvi_0431 0.34 +0.6
473,680 + Echvi_0431 0.34 +2.2
473,681 - Echvi_0431 0.35 +0.5
473,681 - Echvi_0431 0.35 +1.1
473,687 + Echvi_0431 0.41 -0.9
473,688 - Echvi_0431 0.42 -1.0
473,717 + Echvi_0431 0.69 +0.1
473,752 + -2.7
473,761 - +1.7
473,765 + +0.7
473,766 - -1.3
473,766 - +2.3
473,770 + +1.1
473,850 + Echvi_0432 0.13 +0.9
473,850 + Echvi_0432 0.13 -1.9
473,851 - Echvi_0432 0.13 -3.1
473,851 - Echvi_0432 0.13 -1.3
473,851 - Echvi_0432 0.13 +3.2
473,851 - Echvi_0432 0.13 +1.9
473,851 - Echvi_0432 0.13 +1.4
473,925 + Echvi_0432 0.25 +1.4
473,925 + Echvi_0432 0.25 +1.1
473,926 - Echvi_0432 0.25 -0.3
473,927 + Echvi_0432 0.25 -0.6
473,927 + Echvi_0432 0.25 +1.5
473,933 - Echvi_0432 0.26 -1.9
473,933 - Echvi_0432 0.26 -0.8
473,933 - Echvi_0432 0.26 -0.2
473,962 + Echvi_0432 0.31 +0.9
473,993 + Echvi_0432 0.35 -2.1
474,010 + Echvi_0432 0.38 -0.1
474,010 + Echvi_0432 0.38 -2.1
474,010 + Echvi_0432 0.38 +0.1
474,023 + Echvi_0432 0.40 +1.4
474,029 + Echvi_0432 0.41 -0.2
474,029 + Echvi_0432 0.41 +2.2
474,029 + Echvi_0432 0.41 +0.1
474,100 + Echvi_0432 0.52 +1.3
474,142 + Echvi_0432 0.59 -2.5
474,167 + Echvi_0432 0.62 +0.2
474,168 - Echvi_0432 0.63 -1.1
474,229 + Echvi_0432 0.72 +0.6
474,321 + Echvi_0432 0.86 -3.1
474,322 - Echvi_0432 0.87 -1.2
474,322 - Echvi_0432 0.87 +1.5

Or see this region's nucleotide sequence