Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0405 and Echvi_0406 are separated by 177 nucleotides Echvi_0406 and Echvi_0407 are separated by 12 nucleotides
Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245
_0405
Echvi_0406: Echvi_0406 - hypothetical protein, at 442,423 to 443,328
_0406
Echvi_0407: Echvi_0407 - SusD family., at 443,341 to 444,927
_0407
Position (kb) 442
443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.631 kb on - strand, within Echvi_0405 at 441.639 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.651 kb on + strand, within Echvi_0405 at 441.652 kb on - strand, within Echvi_0405 at 441.682 kb on + strand, within Echvi_0405 at 441.682 kb on + strand, within Echvi_0405 at 441.683 kb on - strand, within Echvi_0405 at 441.831 kb on - strand, within Echvi_0405 at 441.842 kb on + strand, within Echvi_0405 at 441.843 kb on - strand, within Echvi_0405 at 441.861 kb on - strand, within Echvi_0405 at 441.874 kb on - strand, within Echvi_0405 at 441.896 kb on - strand, within Echvi_0405 at 441.901 kb on - strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.951 kb on - strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.972 kb on + strand, within Echvi_0405 at 441.972 kb on + strand, within Echvi_0405 at 442.048 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.062 kb on + strand, within Echvi_0405 at 442.087 kb on + strand, within Echvi_0405 at 442.088 kb on - strand, within Echvi_0405 at 442.139 kb on + strand at 442.140 kb on - strand at 442.148 kb on + strand at 442.304 kb on + strand at 442.319 kb on + strand at 442.320 kb on - strand at 442.320 kb on - strand at 442.323 kb on + strand at 442.324 kb on - strand at 442.328 kb on + strand at 442.403 kb on + strand at 442.403 kb on + strand at 442.403 kb on + strand at 442.404 kb on - strand at 442.408 kb on + strand at 442.410 kb on + strand at 442.410 kb on + strand at 442.411 kb on - strand at 442.411 kb on - strand at 442.411 kb on - strand at 442.413 kb on + strand at 442.414 kb on - strand at 442.424 kb on + strand at 442.425 kb on - strand at 442.467 kb on + strand at 442.467 kb on + strand at 442.468 kb on - strand at 442.468 kb on - strand at 442.477 kb on + strand at 442.477 kb on + strand at 442.477 kb on + strand at 442.478 kb on - strand at 442.478 kb on - strand at 442.478 kb on - strand at 442.485 kb on - strand at 442.511 kb on + strand at 442.511 kb on + strand at 442.511 kb on + strand at 442.512 kb on - strand at 442.512 kb on - strand at 442.512 kb on - strand at 442.525 kb on - strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.528 kb on - strand, within Echvi_0406 at 442.528 kb on - strand, within Echvi_0406 at 442.530 kb on - strand, within Echvi_0406 at 442.531 kb on + strand, within Echvi_0406 at 442.532 kb on - strand, within Echvi_0406 at 442.564 kb on + strand, within Echvi_0406 at 442.566 kb on + strand, within Echvi_0406 at 442.566 kb on + strand, within Echvi_0406 at 442.655 kb on + strand, within Echvi_0406 at 442.673 kb on + strand, within Echvi_0406 at 442.674 kb on - strand, within Echvi_0406 at 442.728 kb on + strand, within Echvi_0406 at 442.749 kb on + strand, within Echvi_0406 at 442.795 kb on - strand, within Echvi_0406 at 442.832 kb on - strand, within Echvi_0406 at 442.840 kb on - strand, within Echvi_0406 at 442.899 kb on - strand, within Echvi_0406 at 442.930 kb on + strand, within Echvi_0406 at 442.981 kb on - strand, within Echvi_0406 at 443.055 kb on + strand, within Echvi_0406 at 443.177 kb on + strand, within Echvi_0406 at 443.184 kb on + strand, within Echvi_0406 at 443.203 kb on - strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.220 kb on + strand, within Echvi_0406 at 443.220 kb on + strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.240 kb on - strand at 443.266 kb on + strand at 443.267 kb on - strand at 443.308 kb on + strand at 443.311 kb on + strand at 443.328 kb on + strand at 443.329 kb on - strand at 443.333 kb on - strand at 443.345 kb on + strand at 443.440 kb on + strand at 443.440 kb on + strand at 443.440 kb on + strand at 443.441 kb on - strand at 443.483 kb on + strand at 443.484 kb on - strand at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.697 kb on - strand, within Echvi_0407 at 443.701 kb on + strand, within Echvi_0407 at 443.709 kb on + strand, within Echvi_0407 at 443.822 kb on + strand, within Echvi_0407 at 443.838 kb on + strand, within Echvi_0407 at 443.870 kb on + strand, within Echvi_0407 at 443.870 kb on + strand, within Echvi_0407 at 443.879 kb on - strand, within Echvi_0407 at 443.893 kb on + strand, within Echvi_0407 at 443.893 kb on + strand, within Echvi_0407 at 443.894 kb on - strand, within Echvi_0407 at 443.897 kb on + strand, within Echvi_0407 at 443.897 kb on + strand, within Echvi_0407 at 443.901 kb on + strand, within Echvi_0407 at 443.901 kb on + strand, within Echvi_0407 at 443.902 kb on - strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.912 kb on - strand, within Echvi_0407 at 443.979 kb on - strand, within Echvi_0407 at 444.049 kb on + strand, within Echvi_0407 at 444.049 kb on + strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.051 kb on + strand, within Echvi_0407 at 444.052 kb on - strand, within Echvi_0407 at 444.052 kb on - strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.074 kb on + strand, within Echvi_0407 at 444.074 kb on + strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.079 kb on - strand, within Echvi_0407 at 444.079 kb on - strand, within Echvi_0407 at 444.080 kb on + strand, within Echvi_0407 at 444.080 kb on + strand, within Echvi_0407 at 444.081 kb on - strand, within Echvi_0407 at 444.081 kb on - strand, within Echvi_0407 at 444.147 kb on - strand, within Echvi_0407 at 444.182 kb on + strand, within Echvi_0407 at 444.253 kb on - strand, within Echvi_0407 at 444.307 kb on - strand, within Echvi_0407 at 444.307 kb on - strand, within Echvi_0407
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 441,630 + Echvi_0405 0.59 -1.6 441,630 + Echvi_0405 0.59 -0.3 441,630 + Echvi_0405 0.59 +1.7 441,630 + Echvi_0405 0.59 -2.1 441,631 - Echvi_0405 0.59 -2.2 441,639 + Echvi_0405 0.59 +3.1 441,649 + Echvi_0405 0.60 +1.7 441,649 + Echvi_0405 0.60 +0.9 441,649 + Echvi_0405 0.60 +1.7 441,649 + Echvi_0405 0.60 +0.8 441,649 + Echvi_0405 0.60 -2.4 441,650 - Echvi_0405 0.60 +0.5 441,650 - Echvi_0405 0.60 -1.9 441,651 + Echvi_0405 0.60 +0.9 441,652 - Echvi_0405 0.60 -0.5 441,682 + Echvi_0405 0.62 +0.9 441,682 + Echvi_0405 0.62 +0.3 441,683 - Echvi_0405 0.62 +0.7 441,831 - Echvi_0405 0.72 -1.2 441,842 + Echvi_0405 0.73 +2.8 441,843 - Echvi_0405 0.73 -0.3 441,861 - Echvi_0405 0.74 +0.6 441,874 - Echvi_0405 0.75 -1.2 441,896 - Echvi_0405 0.77 -1.3 441,901 - Echvi_0405 0.77 -1.5 441,904 + Echvi_0405 0.77 +1.3 441,904 + Echvi_0405 0.77 +1.2 441,904 + Echvi_0405 0.77 +3.3 441,904 + Echvi_0405 0.77 +0.9 441,904 + Echvi_0405 0.77 +2.1 441,951 - Echvi_0405 0.80 -1.4 441,954 + Echvi_0405 0.80 -0.6 441,954 + Echvi_0405 0.80 -0.1 441,954 + Echvi_0405 0.80 +2.5 441,954 + Echvi_0405 0.80 -1.4 441,954 + Echvi_0405 0.80 -0.8 441,954 + Echvi_0405 0.80 +1.5 441,954 + Echvi_0405 0.80 -0.1 441,954 + Echvi_0405 0.80 +1.5 441,954 + Echvi_0405 0.80 -3.0 441,954 + Echvi_0405 0.80 +1.5 441,955 - Echvi_0405 0.80 +3.1 441,955 - Echvi_0405 0.80 -1.8 441,955 - Echvi_0405 0.80 -2.2 441,955 - Echvi_0405 0.80 -1.0 441,972 + Echvi_0405 0.82 +0.7 441,972 + Echvi_0405 0.82 +0.2 442,048 + Echvi_0405 0.87 +1.7 442,053 + Echvi_0405 0.87 -0.1 442,053 + Echvi_0405 0.87 -0.6 442,053 + Echvi_0405 0.87 +2.0 442,062 + Echvi_0405 0.88 +0.3 442,087 + Echvi_0405 0.89 -1.2 442,088 - Echvi_0405 0.89 +1.8 442,139 + -0.8 442,140 - -0.8 442,148 + +1.0 442,304 + +2.0 442,319 + -2.9 442,320 - +0.1 442,320 - +0.7 442,323 + +1.5 442,324 - -0.8 442,328 + +0.4 442,403 + +0.6 442,403 + -1.3 442,403 + -1.2 442,404 - +0.5 442,408 + +0.9 442,410 + +3.8 442,410 + -0.5 442,411 - -0.7 442,411 - +1.5 442,411 - +0.6 442,413 + -0.4 442,414 - +2.5 442,424 + +2.5 442,425 - +1.5 442,467 + -3.3 442,467 + +1.1 442,468 - +0.3 442,468 - +0.2 442,477 + -0.3 442,477 + +1.4 442,477 + +0.6 442,478 - -1.1 442,478 - -1.0 442,478 - -0.2 442,485 - -1.4 442,511 + +0.3 442,511 + -1.8 442,511 + +0.2 442,512 - -1.8 442,512 - +0.7 442,512 - -0.3 442,525 - Echvi_0406 0.11 +0.2 442,527 + Echvi_0406 0.11 -0.0 442,527 + Echvi_0406 0.11 +0.5 442,527 + Echvi_0406 0.11 -2.4 442,527 + Echvi_0406 0.11 -1.1 442,527 + Echvi_0406 0.11 +0.1 442,527 + Echvi_0406 0.11 +0.5 442,527 + Echvi_0406 0.11 -1.0 442,527 + Echvi_0406 0.11 +0.5 442,527 + Echvi_0406 0.11 -1.6 442,527 + Echvi_0406 0.11 -2.6 442,527 + Echvi_0406 0.11 +0.5 442,527 + Echvi_0406 0.11 -2.6 442,528 - Echvi_0406 0.12 -0.1 442,528 - Echvi_0406 0.12 -1.7 442,530 - Echvi_0406 0.12 -0.8 442,531 + Echvi_0406 0.12 -1.2 442,532 - Echvi_0406 0.12 -1.5 442,564 + Echvi_0406 0.16 +1.3 442,566 + Echvi_0406 0.16 -2.1 442,566 + Echvi_0406 0.16 +0.4 442,655 + Echvi_0406 0.26 +0.2 442,673 + Echvi_0406 0.28 +1.1 442,674 - Echvi_0406 0.28 -2.3 442,728 + Echvi_0406 0.34 -0.7 442,749 + Echvi_0406 0.36 +2.8 442,795 - Echvi_0406 0.41 -0.1 442,832 - Echvi_0406 0.45 +1.0 442,840 - Echvi_0406 0.46 +1.2 442,899 - Echvi_0406 0.53 +0.7 442,930 + Echvi_0406 0.56 -1.8 442,981 - Echvi_0406 0.62 -1.1 443,055 + Echvi_0406 0.70 -0.0 443,177 + Echvi_0406 0.83 +4.7 443,184 + Echvi_0406 0.84 -2.4 443,203 - Echvi_0406 0.86 -2.6 443,214 + Echvi_0406 0.87 -0.5 443,214 + Echvi_0406 0.87 +3.3 443,214 + Echvi_0406 0.87 -2.4 443,214 + Echvi_0406 0.87 +1.5 443,214 + Echvi_0406 0.87 +1.5 443,216 + Echvi_0406 0.88 -0.9 443,216 + Echvi_0406 0.88 -3.5 443,216 + Echvi_0406 0.88 -0.7 443,217 - Echvi_0406 0.88 +2.9 443,217 - Echvi_0406 0.88 -0.3 443,217 - Echvi_0406 0.88 +0.5 443,217 - Echvi_0406 0.88 +3.0 443,220 + Echvi_0406 0.88 -2.2 443,220 + Echvi_0406 0.88 +0.4 443,221 - Echvi_0406 0.88 -0.3 443,221 - Echvi_0406 0.88 +0.2 443,221 - Echvi_0406 0.88 +1.6 443,240 - +2.5 443,266 + -0.5 443,267 - +0.9 443,308 + -1.0 443,311 + +0.8 443,328 + -2.3 443,329 - -3.2 443,333 - -2.4 443,345 + -0.6 443,440 + -1.3 443,440 + +0.6 443,440 + -0.3 443,441 - +0.6 443,483 + +1.5 443,484 - -1.3 443,696 + Echvi_0407 0.22 +3.0 443,696 + Echvi_0407 0.22 -0.8 443,696 + Echvi_0407 0.22 -2.5 443,696 + Echvi_0407 0.22 -0.7 443,697 - Echvi_0407 0.22 +0.3 443,701 + Echvi_0407 0.23 +0.5 443,709 + Echvi_0407 0.23 +1.7 443,822 + Echvi_0407 0.30 -2.0 443,838 + Echvi_0407 0.31 -1.6 443,870 + Echvi_0407 0.33 -1.2 443,870 + Echvi_0407 0.33 +0.9 443,879 - Echvi_0407 0.34 +0.7 443,893 + Echvi_0407 0.35 +1.4 443,893 + Echvi_0407 0.35 +0.8 443,894 - Echvi_0407 0.35 +0.2 443,897 + Echvi_0407 0.35 +0.2 443,897 + Echvi_0407 0.35 +1.4 443,901 + Echvi_0407 0.35 -1.1 443,901 + Echvi_0407 0.35 -1.5 443,902 - Echvi_0407 0.35 -1.7 443,911 + Echvi_0407 0.36 +3.4 443,911 + Echvi_0407 0.36 -1.4 443,911 + Echvi_0407 0.36 -1.7 443,912 - Echvi_0407 0.36 -1.3 443,979 - Echvi_0407 0.40 +1.7 444,049 + Echvi_0407 0.45 +1.7 444,049 + Echvi_0407 0.45 -2.5 444,050 - Echvi_0407 0.45 +2.7 444,050 - Echvi_0407 0.45 -2.5 444,050 - Echvi_0407 0.45 -0.7 444,050 - Echvi_0407 0.45 -2.2 444,050 - Echvi_0407 0.45 +1.6 444,050 - Echvi_0407 0.45 -3.0 444,051 + Echvi_0407 0.45 -2.2 444,052 - Echvi_0407 0.45 -0.9 444,052 - Echvi_0407 0.45 -2.0 444,071 + Echvi_0407 0.46 -0.2 444,071 + Echvi_0407 0.46 +0.3 444,071 + Echvi_0407 0.46 +2.9 444,071 + Echvi_0407 0.46 +0.6 444,072 - Echvi_0407 0.46 -1.8 444,072 - Echvi_0407 0.46 -1.2 444,072 - Echvi_0407 0.46 -1.6 444,072 - Echvi_0407 0.46 +1.5 444,074 + Echvi_0407 0.46 -0.8 444,074 + Echvi_0407 0.46 -4.2 444,075 - Echvi_0407 0.46 -2.5 444,075 - Echvi_0407 0.46 +0.9 444,075 - Echvi_0407 0.46 +1.8 444,075 - Echvi_0407 0.46 +1.7 444,075 - Echvi_0407 0.46 +0.9 444,075 - Echvi_0407 0.46 -0.1 444,078 + Echvi_0407 0.46 -0.7 444,078 + Echvi_0407 0.46 -0.1 444,078 + Echvi_0407 0.46 -0.1 444,078 + Echvi_0407 0.46 +0.0 444,079 - Echvi_0407 0.47 +2.8 444,079 - Echvi_0407 0.47 +4.2 444,080 + Echvi_0407 0.47 -1.1 444,080 + Echvi_0407 0.47 +0.2 444,081 - Echvi_0407 0.47 +0.9 444,081 - Echvi_0407 0.47 -0.1 444,147 - Echvi_0407 0.51 +0.5 444,182 + Echvi_0407 0.53 -1.0 444,253 - Echvi_0407 0.57 +0.2 444,307 - Echvi_0407 0.61 -0.9 444,307 - Echvi_0407 0.61 +1.1
Or see this region's nucleotide sequence