Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0397

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0396 and Echvi_0397 are separated by 189 nucleotidesEchvi_0397 and Echvi_0398 are separated by 23 nucleotides Echvi_0396: Echvi_0396 - Transcriptional regulators, at 419,876 to 420,922 _0396 Echvi_0397: Echvi_0397 - hypothetical protein, at 421,112 to 422,476 _0397 Echvi_0398: Echvi_0398 - Beta-glucosidase-related glycosidases, at 422,500 to 424,824 _0398 Position (kb) 421 422 423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 420.120 kb on + strand, within Echvi_0396at 420.137 kb on - strand, within Echvi_0396at 420.231 kb on + strand, within Echvi_0396at 420.232 kb on - strand, within Echvi_0396at 420.235 kb on + strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.319 kb on + strand, within Echvi_0396at 420.340 kb on - strand, within Echvi_0396at 420.362 kb on + strand, within Echvi_0396at 420.447 kb on + strand, within Echvi_0396at 420.460 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.481 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.499 kb on - strand, within Echvi_0396at 420.529 kb on + strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.535 kb on + strand, within Echvi_0396at 420.536 kb on - strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.604 kb on + strand, within Echvi_0396at 420.621 kb on + strand, within Echvi_0396at 420.622 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.641 kb on + strand, within Echvi_0396at 420.645 kb on + strand, within Echvi_0396at 420.650 kb on + strand, within Echvi_0396at 420.668 kb on + strand, within Echvi_0396at 420.690 kb on + strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.693 kb on + strand, within Echvi_0396at 420.719 kb on + strand, within Echvi_0396at 420.742 kb on + strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.770 kb on + strand, within Echvi_0396at 420.774 kb on + strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.824 kb on + strandat 420.842 kb on - strandat 420.863 kb on + strandat 420.863 kb on + strandat 420.874 kb on - strandat 420.874 kb on - strandat 420.943 kb on - strandat 420.949 kb on + strandat 421.060 kb on + strandat 421.072 kb on + strandat 421.207 kb on - strandat 421.245 kb on + strandat 421.246 kb on - strandat 421.275 kb on - strand, within Echvi_0397at 421.322 kb on - strand, within Echvi_0397at 421.485 kb on + strand, within Echvi_0397at 421.557 kb on + strand, within Echvi_0397at 421.561 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.584 kb on - strand, within Echvi_0397at 421.593 kb on + strand, within Echvi_0397at 421.594 kb on - strand, within Echvi_0397at 421.608 kb on - strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.691 kb on - strand, within Echvi_0397at 421.736 kb on + strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.838 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.940 kb on + strand, within Echvi_0397at 421.941 kb on - strand, within Echvi_0397at 421.996 kb on - strand, within Echvi_0397at 421.999 kb on + strand, within Echvi_0397at 421.999 kb on + strand, within Echvi_0397at 422.000 kb on - strand, within Echvi_0397at 422.000 kb on - strand, within Echvi_0397at 422.002 kb on - strand, within Echvi_0397at 422.059 kb on + strand, within Echvi_0397at 422.191 kb on - strand, within Echvi_0397at 422.248 kb on + strand, within Echvi_0397at 422.278 kb on - strand, within Echvi_0397at 422.278 kb on - strand, within Echvi_0397at 422.283 kb on + strand, within Echvi_0397at 422.283 kb on + strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.284 kb on - strand, within Echvi_0397at 422.636 kb on + strandat 422.810 kb on + strand, within Echvi_0398at 422.981 kb on + strand, within Echvi_0398at 422.981 kb on + strand, within Echvi_0398at 422.985 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 422.996 kb on - strand, within Echvi_0398at 423.000 kb on - strand, within Echvi_0398at 423.063 kb on + strand, within Echvi_0398at 423.286 kb on + strand, within Echvi_0398at 423.370 kb on + strand, within Echvi_0398at 423.370 kb on + strand, within Echvi_0398at 423.371 kb on - strand, within Echvi_0398

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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420,120 + Echvi_0396 0.23 +1.3
420,137 - Echvi_0396 0.25 +0.7
420,231 + Echvi_0396 0.34 -1.9
420,232 - Echvi_0396 0.34 -1.8
420,235 + Echvi_0396 0.34 +1.4
420,236 - Echvi_0396 0.34 +0.9
420,236 - Echvi_0396 0.34 +0.4
420,257 + Echvi_0396 0.36 +3.1
420,257 + Echvi_0396 0.36 -1.4
420,259 + Echvi_0396 0.37 -2.4
420,259 + Echvi_0396 0.37 +0.9
420,259 + Echvi_0396 0.37 -0.7
420,259 + Echvi_0396 0.37 +3.2
420,259 + Echvi_0396 0.37 +2.6
420,259 + Echvi_0396 0.37 -2.0
420,259 + Echvi_0396 0.37 +1.3
420,259 + Echvi_0396 0.37 -0.9
420,259 + Echvi_0396 0.37 +0.5
420,259 + Echvi_0396 0.37 +0.8
420,259 + Echvi_0396 0.37 +0.2
420,259 + Echvi_0396 0.37 -2.9
420,259 + Echvi_0396 0.37 +0.4
420,259 + Echvi_0396 0.37 +0.8
420,259 + Echvi_0396 0.37 +0.9
420,259 + Echvi_0396 0.37 +0.8
420,259 + Echvi_0396 0.37 +1.8
420,259 + Echvi_0396 0.37 +0.9
420,260 - Echvi_0396 0.37 +2.8
420,260 - Echvi_0396 0.37 +0.5
420,260 - Echvi_0396 0.37 -2.6
420,260 - Echvi_0396 0.37 +1.2
420,260 - Echvi_0396 0.37 -1.0
420,260 - Echvi_0396 0.37 +2.1
420,260 - Echvi_0396 0.37 +0.8
420,319 + Echvi_0396 0.42 -0.0
420,340 - Echvi_0396 0.44 +0.2
420,362 + Echvi_0396 0.46 +2.8
420,447 + Echvi_0396 0.55 +1.5
420,460 + Echvi_0396 0.56 -3.6
420,473 + Echvi_0396 0.57 +3.1
420,473 + Echvi_0396 0.57 -0.1
420,480 - Echvi_0396 0.58 +0.7
420,480 - Echvi_0396 0.58 -0.7
420,480 - Echvi_0396 0.58 -1.3
420,481 + Echvi_0396 0.58 +1.0
420,492 + Echvi_0396 0.59 -0.5
420,492 + Echvi_0396 0.59 +0.6
420,492 + Echvi_0396 0.59 -3.4
420,493 - Echvi_0396 0.59 -3.4
420,493 - Echvi_0396 0.59 +1.9
420,493 - Echvi_0396 0.59 +0.4
420,493 - Echvi_0396 0.59 -1.8
420,493 - Echvi_0396 0.59 -0.0
420,499 - Echvi_0396 0.60 +2.5
420,529 + Echvi_0396 0.62 +0.2
420,530 - Echvi_0396 0.62 -0.8
420,530 - Echvi_0396 0.62 +2.5
420,530 - Echvi_0396 0.62 +0.4
420,534 - Echvi_0396 0.63 -0.7
420,534 - Echvi_0396 0.63 +3.4
420,535 + Echvi_0396 0.63 -0.5
420,536 - Echvi_0396 0.63 +2.7
420,573 + Echvi_0396 0.67 -1.9
420,573 + Echvi_0396 0.67 +0.0
420,574 - Echvi_0396 0.67 -1.0
420,574 - Echvi_0396 0.67 -3.2
420,574 - Echvi_0396 0.67 +1.5
420,574 - Echvi_0396 0.67 -2.3
420,604 + Echvi_0396 0.70 -2.1
420,621 + Echvi_0396 0.71 -2.2
420,622 - Echvi_0396 0.71 +0.5
420,630 - Echvi_0396 0.72 +0.6
420,630 - Echvi_0396 0.72 -0.3
420,641 + Echvi_0396 0.73 -1.6
420,645 + Echvi_0396 0.73 -2.0
420,650 + Echvi_0396 0.74 +0.8
420,668 + Echvi_0396 0.76 -0.2
420,690 + Echvi_0396 0.78 -2.5
420,691 - Echvi_0396 0.78 +1.5
420,691 - Echvi_0396 0.78 -0.3
420,693 + Echvi_0396 0.78 -0.5
420,719 + Echvi_0396 0.81 -0.5
420,742 + Echvi_0396 0.83 +0.2
420,743 - Echvi_0396 0.83 -0.7
420,743 - Echvi_0396 0.83 -1.6
420,744 + Echvi_0396 0.83 +0.5
420,744 + Echvi_0396 0.83 +0.6
420,744 + Echvi_0396 0.83 -0.0
420,770 + Echvi_0396 0.85 -1.7
420,774 + Echvi_0396 0.86 +0.0
420,775 - Echvi_0396 0.86 -0.8
420,775 - Echvi_0396 0.86 -0.8
420,775 - Echvi_0396 0.86 -2.9
420,775 - Echvi_0396 0.86 -1.1
420,775 - Echvi_0396 0.86 +0.9
420,776 + Echvi_0396 0.86 -0.2
420,776 + Echvi_0396 0.86 +0.6
420,776 + Echvi_0396 0.86 -2.0
420,777 - Echvi_0396 0.86 +1.6
420,777 - Echvi_0396 0.86 +2.3
420,777 - Echvi_0396 0.86 +0.2
420,824 + -1.9
420,842 - +2.4
420,863 + +2.8
420,863 + +2.4
420,874 - -0.8
420,874 - +1.5
420,943 - -3.8
420,949 + -0.1
421,060 + -1.0
421,072 + +1.0
421,207 - +1.9
421,245 + +0.2
421,246 - -0.7
421,275 - Echvi_0397 0.12 -1.3
421,322 - Echvi_0397 0.15 +1.2
421,485 + Echvi_0397 0.27 -1.2
421,557 + Echvi_0397 0.33 -2.2
421,561 + Echvi_0397 0.33 +1.5
421,583 + Echvi_0397 0.35 +0.2
421,583 + Echvi_0397 0.35 -1.0
421,584 - Echvi_0397 0.35 +0.9
421,593 + Echvi_0397 0.35 +2.0
421,594 - Echvi_0397 0.35 -2.2
421,608 - Echvi_0397 0.36 -3.0
421,668 + Echvi_0397 0.41 -1.9
421,668 + Echvi_0397 0.41 +0.8
421,668 + Echvi_0397 0.41 -1.5
421,669 - Echvi_0397 0.41 -0.8
421,669 - Echvi_0397 0.41 -0.3
421,691 - Echvi_0397 0.42 -2.5
421,736 + Echvi_0397 0.46 -0.9
421,772 - Echvi_0397 0.48 +0.3
421,772 - Echvi_0397 0.48 +0.2
421,772 - Echvi_0397 0.48 +0.9
421,772 - Echvi_0397 0.48 +0.9
421,838 + Echvi_0397 0.53 +4.1
421,901 + Echvi_0397 0.58 +0.9
421,901 + Echvi_0397 0.58 -2.4
421,940 + Echvi_0397 0.61 -1.7
421,941 - Echvi_0397 0.61 -0.3
421,996 - Echvi_0397 0.65 -0.7
421,999 + Echvi_0397 0.65 +1.2
421,999 + Echvi_0397 0.65 +1.4
422,000 - Echvi_0397 0.65 +2.5
422,000 - Echvi_0397 0.65 +1.6
422,002 - Echvi_0397 0.65 +0.4
422,059 + Echvi_0397 0.69 -1.2
422,191 - Echvi_0397 0.79 +0.9
422,248 + Echvi_0397 0.83 -1.7
422,278 - Echvi_0397 0.85 -2.3
422,278 - Echvi_0397 0.85 -1.4
422,283 + Echvi_0397 0.86 +2.9
422,283 + Echvi_0397 0.86 -2.6
422,284 - Echvi_0397 0.86 -3.6
422,284 - Echvi_0397 0.86 -1.1
422,284 - Echvi_0397 0.86 -1.9
422,636 + -0.1
422,810 + Echvi_0398 0.13 -2.9
422,981 + Echvi_0398 0.21 +0.6
422,981 + Echvi_0398 0.21 -0.1
422,985 - Echvi_0398 0.21 -1.8
422,996 - Echvi_0398 0.21 -0.3
422,996 - Echvi_0398 0.21 -0.8
422,996 - Echvi_0398 0.21 -2.6
422,996 - Echvi_0398 0.21 -1.0
423,000 - Echvi_0398 0.22 -2.3
423,063 + Echvi_0398 0.24 +2.8
423,286 + Echvi_0398 0.34 -0.7
423,370 + Echvi_0398 0.37 +0.8
423,370 + Echvi_0398 0.37 -0.4
423,371 - Echvi_0398 0.37 +3.0

Or see this region's nucleotide sequence