Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0388 and Echvi_0389 are separated by 115 nucleotides Echvi_0389 and Echvi_0390 are separated by 185 nucleotides Echvi_0390 and Echvi_0391 overlap by 11 nucleotides Echvi_0391 and Echvi_0392 are separated by 101 nucleotides
Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171
_0388
Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751
_0389
Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112
_0390
Echvi_0391: Echvi_0391 - Bacterial mobilisation protein (MobC)., at 417,102 to 417,446
_0391
Echvi_0392: Echvi_0392 - DNA primase (bacterial type), at 417,548 to 418,410
_0392
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 414.941 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 414.992 kb on - strand, within Echvi_0388 at 415.006 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.048 kb on + strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.049 kb on - strand, within Echvi_0388 at 415.147 kb on - strand at 415.166 kb on - strand at 415.186 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.190 kb on + strand at 415.191 kb on - strand at 415.191 kb on - strand at 415.259 kb on + strand at 415.260 kb on - strand at 415.269 kb on - strand at 415.280 kb on + strand at 415.280 kb on + strand at 415.316 kb on - strand at 415.335 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.356 kb on + strand, within Echvi_0389 at 415.357 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.385 kb on - strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.411 kb on + strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.412 kb on - strand, within Echvi_0389 at 415.430 kb on - strand, within Echvi_0389 at 415.447 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.468 kb on + strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.469 kb on - strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.481 kb on + strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.482 kb on - strand, within Echvi_0389 at 415.555 kb on - strand, within Echvi_0389 at 415.560 kb on - strand, within Echvi_0389 at 415.652 kb on - strand, within Echvi_0389 at 415.665 kb on - strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.670 kb on + strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.671 kb on - strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.674 kb on + strand, within Echvi_0389 at 415.675 kb on - strand, within Echvi_0389 at 415.691 kb on + strand, within Echvi_0389 at 415.692 kb on - strand, within Echvi_0389 at 415.750 kb on - strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.804 kb on + strand at 415.804 kb on + strand at 415.805 kb on - strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.815 kb on + strand at 415.817 kb on + strand at 415.817 kb on + strand at 415.818 kb on - strand at 415.818 kb on - strand at 415.825 kb on + strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.826 kb on - strand at 415.837 kb on + strand at 415.896 kb on - strand at 415.905 kb on - strand at 415.905 kb on - strand at 415.913 kb on - strand at 415.948 kb on + strand at 415.948 kb on + strand at 415.949 kb on - strand at 415.991 kb on + strand at 416.035 kb on + strand at 416.045 kb on - strand at 416.065 kb on + strand, within Echvi_0390 at 416.065 kb on + strand, within Echvi_0390 at 416.071 kb on - strand, within Echvi_0390 at 416.109 kb on - strand, within Echvi_0390 at 416.165 kb on + strand, within Echvi_0390 at 416.431 kb on - strand, within Echvi_0390 at 416.431 kb on - strand, within Echvi_0390 at 416.437 kb on - strand, within Echvi_0390 at 416.552 kb on + strand, within Echvi_0390 at 416.556 kb on - strand, within Echvi_0390 at 416.564 kb on + strand, within Echvi_0390 at 416.565 kb on - strand, within Echvi_0390 at 416.657 kb on + strand, within Echvi_0390 at 416.658 kb on - strand, within Echvi_0390 at 416.658 kb on - strand, within Echvi_0390 at 416.713 kb on + strand, within Echvi_0390 at 416.715 kb on + strand, within Echvi_0390 at 416.716 kb on - strand, within Echvi_0390 at 416.726 kb on - strand, within Echvi_0390 at 416.848 kb on - strand, within Echvi_0390 at 416.883 kb on - strand, within Echvi_0390 at 416.907 kb on - strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.919 kb on + strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.920 kb on - strand, within Echvi_0390 at 416.948 kb on - strand, within Echvi_0390 at 416.963 kb on + strand, within Echvi_0390 at 416.964 kb on - strand, within Echvi_0390 at 416.975 kb on + strand, within Echvi_0390 at 416.976 kb on - strand, within Echvi_0390 at 417.062 kb on - strand at 417.062 kb on - strand at 417.146 kb on + strand, within Echvi_0391 at 417.147 kb on - strand, within Echvi_0391 at 417.224 kb on + strand, within Echvi_0391 at 417.227 kb on + strand, within Echvi_0391 at 417.230 kb on + strand, within Echvi_0391 at 417.253 kb on + strand, within Echvi_0391 at 417.399 kb on - strand, within Echvi_0391 at 417.399 kb on - strand, within Echvi_0391 at 417.406 kb on - strand, within Echvi_0391 at 417.407 kb on + strand, within Echvi_0391 at 417.593 kb on + strand at 417.612 kb on + strand at 417.612 kb on + strand at 417.613 kb on - strand at 417.613 kb on - strand at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.680 kb on + strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.681 kb on - strand, within Echvi_0392 at 417.697 kb on - strand, within Echvi_0392 at 417.745 kb on + strand, within Echvi_0392 at 417.745 kb on + strand, within Echvi_0392 at 417.746 kb on - strand, within Echvi_0392 at 417.746 kb on - strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.767 kb on + strand, within Echvi_0392 at 417.768 kb on - strand, within Echvi_0392 at 417.768 kb on - strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.841 kb on + strand, within Echvi_0392 at 417.842 kb on - strand, within Echvi_0392 at 417.842 kb on - strand, within Echvi_0392 at 417.867 kb on + strand, within Echvi_0392 at 417.870 kb on + strand, within Echvi_0392 at 417.870 kb on + strand, within Echvi_0392 at 417.871 kb on - strand, within Echvi_0392 at 417.871 kb on - strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.874 kb on + strand, within Echvi_0392 at 417.875 kb on - strand, within Echvi_0392 at 417.875 kb on - strand, within Echvi_0392 at 417.903 kb on + strand, within Echvi_0392 at 417.904 kb on - strand, within Echvi_0392 at 417.938 kb on - strand, within Echvi_0392 at 417.975 kb on + strand, within Echvi_0392 at 417.978 kb on + strand at 417.978 kb on + strand, within Echvi_0392 at 417.979 kb on - strand, within Echvi_0392 at 417.979 kb on - strand, within Echvi_0392 at 418.016 kb on + strand, within Echvi_0392 at 418.017 kb on - strand, within Echvi_0392 at 418.017 kb on - strand, within Echvi_0392
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 414,941 - Echvi_0388 0.45 -2.1 414,992 - Echvi_0388 0.57 -1.1 414,992 - Echvi_0388 0.57 -1.8 414,992 - Echvi_0388 0.57 -2.2 414,992 - Echvi_0388 0.57 -1.8 415,006 + Echvi_0388 0.61 +0.7 415,048 + Echvi_0388 0.71 -1.4 415,048 + Echvi_0388 0.71 +0.5 415,049 - Echvi_0388 0.71 +2.3 415,049 - Echvi_0388 0.71 +0.1 415,049 - Echvi_0388 0.71 +0.9 415,147 - +2.9 415,166 - +0.8 415,186 + -3.1 415,190 + +1.1 415,190 + -3.2 415,190 + +0.1 415,191 - -1.2 415,191 - -3.1 415,259 + -1.0 415,260 - +0.0 415,269 - +1.1 415,280 + -1.2 415,280 + +0.5 415,316 - +0.0 415,335 + Echvi_0389 0.10 +0.3 415,356 + Echvi_0389 0.15 -0.0 415,356 + Echvi_0389 0.15 +2.0 415,357 - Echvi_0389 0.15 -0.4 415,385 - Echvi_0389 0.21 +4.7 415,385 - Echvi_0389 0.21 +1.5 415,411 + Echvi_0389 0.27 +0.2 415,411 + Echvi_0389 0.27 -1.7 415,411 + Echvi_0389 0.27 +1.0 415,411 + Echvi_0389 0.27 -2.7 415,412 - Echvi_0389 0.27 -1.5 415,412 - Echvi_0389 0.27 +2.3 415,412 - Echvi_0389 0.27 -1.0 415,430 - Echvi_0389 0.31 -0.5 415,447 + Echvi_0389 0.34 +1.2 415,468 + Echvi_0389 0.39 +1.8 415,468 + Echvi_0389 0.39 -2.5 415,469 - Echvi_0389 0.39 +0.5 415,469 - Echvi_0389 0.39 +1.0 415,469 - Echvi_0389 0.39 +2.5 415,481 + Echvi_0389 0.42 -0.4 415,481 + Echvi_0389 0.42 -1.5 415,481 + Echvi_0389 0.42 -1.4 415,482 - Echvi_0389 0.42 -0.4 415,482 - Echvi_0389 0.42 +2.2 415,555 - Echvi_0389 0.58 -0.1 415,560 - Echvi_0389 0.59 -0.0 415,652 - Echvi_0389 0.78 -2.2 415,665 - Echvi_0389 0.81 -2.8 415,670 + Echvi_0389 0.82 -2.0 415,670 + Echvi_0389 0.82 -0.1 415,670 + Echvi_0389 0.82 -0.4 415,670 + Echvi_0389 0.82 +2.7 415,670 + Echvi_0389 0.82 -1.9 415,670 + Echvi_0389 0.82 -1.9 415,670 + Echvi_0389 0.82 +0.2 415,670 + Echvi_0389 0.82 -2.1 415,670 + Echvi_0389 0.82 +0.8 415,670 + Echvi_0389 0.82 +2.8 415,670 + Echvi_0389 0.82 -2.5 415,670 + Echvi_0389 0.82 +1.6 415,671 - Echvi_0389 0.83 -0.7 415,671 - Echvi_0389 0.83 +0.0 415,671 - Echvi_0389 0.83 +3.9 415,671 - Echvi_0389 0.83 +0.2 415,671 - Echvi_0389 0.83 +1.0 415,671 - Echvi_0389 0.83 +2.0 415,671 - Echvi_0389 0.83 +1.3 415,671 - Echvi_0389 0.83 +3.0 415,671 - Echvi_0389 0.83 +0.2 415,671 - Echvi_0389 0.83 +2.4 415,671 - Echvi_0389 0.83 +1.5 415,671 - Echvi_0389 0.83 -0.1 415,674 + Echvi_0389 0.83 +0.5 415,674 + Echvi_0389 0.83 +2.5 415,674 + Echvi_0389 0.83 +1.7 415,675 - Echvi_0389 0.83 -1.5 415,691 + Echvi_0389 0.87 +1.0 415,692 - Echvi_0389 0.87 +0.8 415,750 - +0.1 415,754 + -0.3 415,755 - -1.3 415,804 + -0.8 415,804 + +1.0 415,805 - +1.2 415,815 + +0.5 415,815 + -0.5 415,815 + -1.5 415,817 + -0.4 415,817 + -2.3 415,818 - +1.5 415,818 - +0.9 415,825 + -2.2 415,826 - -1.2 415,826 - +3.3 415,826 - +0.7 415,837 + +1.9 415,896 - +2.2 415,905 - -3.4 415,905 - -0.9 415,913 - -2.9 415,948 + -2.1 415,948 + +0.9 415,949 - +1.0 415,991 + +0.4 416,035 + +2.6 416,045 - -1.7 416,065 + Echvi_0390 0.11 -1.9 416,065 + Echvi_0390 0.11 +1.9 416,071 - Echvi_0390 0.11 -2.6 416,109 - Echvi_0390 0.15 -3.3 416,165 + Echvi_0390 0.19 -0.8 416,431 - Echvi_0390 0.42 -3.6 416,431 - Echvi_0390 0.42 -3.6 416,437 - Echvi_0390 0.43 -1.1 416,552 + Echvi_0390 0.52 -2.0 416,556 - Echvi_0390 0.53 -0.6 416,564 + Echvi_0390 0.53 -0.9 416,565 - Echvi_0390 0.53 -1.5 416,657 + Echvi_0390 0.61 -1.5 416,658 - Echvi_0390 0.61 -1.0 416,658 - Echvi_0390 0.61 -1.9 416,713 + Echvi_0390 0.66 -0.9 416,715 + Echvi_0390 0.66 -2.0 416,716 - Echvi_0390 0.66 -2.1 416,726 - Echvi_0390 0.67 -1.2 416,848 - Echvi_0390 0.77 -2.2 416,883 - Echvi_0390 0.80 -2.4 416,907 - Echvi_0390 0.82 -2.1 416,919 + Echvi_0390 0.84 +0.5 416,919 + Echvi_0390 0.84 -2.6 416,919 + Echvi_0390 0.84 -2.0 416,919 + Echvi_0390 0.84 +1.7 416,919 + Echvi_0390 0.84 -1.8 416,920 - Echvi_0390 0.84 -1.0 416,920 - Echvi_0390 0.84 -2.3 416,920 - Echvi_0390 0.84 -2.9 416,920 - Echvi_0390 0.84 +0.4 416,948 - Echvi_0390 0.86 +0.3 416,963 + Echvi_0390 0.87 +0.1 416,964 - Echvi_0390 0.87 -1.2 416,975 + Echvi_0390 0.88 -2.4 416,976 - Echvi_0390 0.88 +0.2 417,062 - -2.4 417,062 - -2.4 417,146 + Echvi_0391 0.13 +1.6 417,147 - Echvi_0391 0.13 -2.9 417,224 + Echvi_0391 0.35 -0.3 417,227 + Echvi_0391 0.36 +0.5 417,230 + Echvi_0391 0.37 -0.5 417,253 + Echvi_0391 0.44 -1.2 417,399 - Echvi_0391 0.86 -1.5 417,399 - Echvi_0391 0.86 -0.5 417,406 - Echvi_0391 0.88 -2.5 417,407 + Echvi_0391 0.88 +2.5 417,593 + -2.2 417,612 + +1.4 417,612 + +0.7 417,613 - -0.2 417,613 - -2.1 417,680 + Echvi_0392 0.15 +3.6 417,680 + Echvi_0392 0.15 +0.1 417,680 + Echvi_0392 0.15 +0.9 417,680 + Echvi_0392 0.15 -2.3 417,680 + Echvi_0392 0.15 -2.1 417,680 + Echvi_0392 0.15 -0.1 417,681 - Echvi_0392 0.15 -1.2 417,681 - Echvi_0392 0.15 -1.5 417,681 - Echvi_0392 0.15 -1.3 417,681 - Echvi_0392 0.15 -2.6 417,697 - Echvi_0392 0.17 -1.4 417,745 + Echvi_0392 0.23 +4.0 417,745 + Echvi_0392 0.23 +2.0 417,746 - Echvi_0392 0.23 -2.0 417,746 - Echvi_0392 0.23 -0.5 417,767 + Echvi_0392 0.25 +2.1 417,767 + Echvi_0392 0.25 -0.2 417,767 + Echvi_0392 0.25 +2.0 417,768 - Echvi_0392 0.25 -3.7 417,768 - Echvi_0392 0.25 -1.0 417,841 + Echvi_0392 0.34 -1.4 417,841 + Echvi_0392 0.34 -1.0 417,841 + Echvi_0392 0.34 -0.7 417,841 + Echvi_0392 0.34 -1.5 417,842 - Echvi_0392 0.34 -2.4 417,842 - Echvi_0392 0.34 -0.9 417,867 + Echvi_0392 0.37 +4.6 417,870 + Echvi_0392 0.37 +1.7 417,870 + Echvi_0392 0.37 -1.1 417,871 - Echvi_0392 0.37 -0.7 417,871 - Echvi_0392 0.37 +1.0 417,874 + Echvi_0392 0.38 +0.3 417,874 + Echvi_0392 0.38 -1.5 417,874 + Echvi_0392 0.38 +2.4 417,875 - Echvi_0392 0.38 +0.5 417,875 - Echvi_0392 0.38 -2.1 417,903 + Echvi_0392 0.41 -0.7 417,904 - Echvi_0392 0.41 -1.7 417,938 - Echvi_0392 0.45 +0.1 417,975 + Echvi_0392 0.49 -2.1 417,978 + +0.9 417,978 + Echvi_0392 0.50 -2.2 417,979 - Echvi_0392 0.50 -2.9 417,979 - Echvi_0392 0.50 -1.7 418,016 + Echvi_0392 0.54 -0.5 418,017 - Echvi_0392 0.54 -0.1 418,017 - Echvi_0392 0.54 -0.2
Or see this region's nucleotide sequence