Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0389

Experiment: m.b. D-Cycloserine 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0388 and Echvi_0389 are separated by 115 nucleotidesEchvi_0389 and Echvi_0390 are separated by 185 nucleotides Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171 _0388 Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751 _0389 Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112 _0390 Position (kb) 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 414.314 kb on + strandat 414.314 kb on + strandat 414.315 kb on - strandat 414.320 kb on + strandat 414.320 kb on + strandat 414.321 kb on - strandat 414.321 kb on - strandat 414.460 kb on + strandat 414.479 kb on - strandat 414.499 kb on + strandat 414.512 kb on + strandat 414.520 kb on + strandat 414.520 kb on + strandat 414.523 kb on + strandat 414.551 kb on + strandat 414.552 kb on - strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.574 kb on - strandat 414.588 kb on + strandat 414.588 kb on + strandat 414.601 kb on - strandat 414.603 kb on + strandat 414.634 kb on - strandat 414.640 kb on - strandat 414.653 kb on - strandat 414.669 kb on - strandat 414.880 kb on - strand, within Echvi_0388at 414.882 kb on + strand, within Echvi_0388at 414.900 kb on + strand, within Echvi_0388at 414.911 kb on - strand, within Echvi_0388at 414.941 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 415.006 kb on + strand, within Echvi_0388at 415.048 kb on + strand, within Echvi_0388at 415.048 kb on + strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.147 kb on - strandat 415.166 kb on - strandat 415.186 kb on + strandat 415.190 kb on + strandat 415.190 kb on + strandat 415.190 kb on + strandat 415.191 kb on - strandat 415.191 kb on - strandat 415.259 kb on + strandat 415.260 kb on - strandat 415.269 kb on - strandat 415.280 kb on + strandat 415.280 kb on + strandat 415.316 kb on - strandat 415.335 kb on + strand, within Echvi_0389at 415.356 kb on + strand, within Echvi_0389at 415.356 kb on + strand, within Echvi_0389at 415.357 kb on - strand, within Echvi_0389at 415.385 kb on - strand, within Echvi_0389at 415.385 kb on - strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.430 kb on - strand, within Echvi_0389at 415.447 kb on + strand, within Echvi_0389at 415.468 kb on + strand, within Echvi_0389at 415.468 kb on + strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.482 kb on - strand, within Echvi_0389at 415.482 kb on - strand, within Echvi_0389at 415.555 kb on - strand, within Echvi_0389at 415.560 kb on - strand, within Echvi_0389at 415.652 kb on - strand, within Echvi_0389at 415.665 kb on - strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.675 kb on - strand, within Echvi_0389at 415.691 kb on + strand, within Echvi_0389at 415.692 kb on - strand, within Echvi_0389at 415.750 kb on - strandat 415.754 kb on + strandat 415.755 kb on - strandat 415.804 kb on + strandat 415.804 kb on + strandat 415.805 kb on - strandat 415.815 kb on + strandat 415.815 kb on + strandat 415.815 kb on + strandat 415.817 kb on + strandat 415.817 kb on + strandat 415.818 kb on - strandat 415.818 kb on - strandat 415.825 kb on + strandat 415.826 kb on - strandat 415.826 kb on - strandat 415.826 kb on - strandat 415.837 kb on + strandat 415.896 kb on - strandat 415.905 kb on - strandat 415.905 kb on - strandat 415.913 kb on - strandat 415.948 kb on + strandat 415.948 kb on + strandat 415.949 kb on - strandat 415.991 kb on + strandat 416.035 kb on + strandat 416.045 kb on - strandat 416.065 kb on + strand, within Echvi_0390at 416.065 kb on + strand, within Echvi_0390at 416.071 kb on - strand, within Echvi_0390at 416.109 kb on - strand, within Echvi_0390at 416.165 kb on + strand, within Echvi_0390at 416.431 kb on - strand, within Echvi_0390at 416.431 kb on - strand, within Echvi_0390at 416.437 kb on - strand, within Echvi_0390at 416.552 kb on + strand, within Echvi_0390at 416.556 kb on - strand, within Echvi_0390at 416.564 kb on + strand, within Echvi_0390at 416.565 kb on - strand, within Echvi_0390at 416.657 kb on + strand, within Echvi_0390at 416.658 kb on - strand, within Echvi_0390at 416.658 kb on - strand, within Echvi_0390at 416.713 kb on + strand, within Echvi_0390at 416.715 kb on + strand, within Echvi_0390at 416.716 kb on - strand, within Echvi_0390at 416.726 kb on - strand, within Echvi_0390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml
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414,314 + -3.4
414,314 + +0.7
414,315 - +1.2
414,320 + -0.5
414,320 + +1.5
414,321 - +1.4
414,321 - +2.0
414,460 + -0.3
414,479 - +0.3
414,499 + -1.1
414,512 + +0.4
414,520 + +0.9
414,520 + +3.0
414,523 + -1.6
414,551 + +0.6
414,552 - +1.8
414,567 + +0.6
414,567 + +0.1
414,567 + -1.9
414,567 + +1.7
414,567 + -2.1
414,574 - -0.3
414,588 + -2.4
414,588 + +1.5
414,601 - +0.4
414,603 + -2.9
414,634 - +0.1
414,640 - +4.2
414,653 - -2.1
414,669 - -0.7
414,880 - Echvi_0388 0.31 +0.5
414,882 + Echvi_0388 0.31 +0.8
414,900 + Echvi_0388 0.36 +0.8
414,911 - Echvi_0388 0.38 +1.9
414,941 - Echvi_0388 0.45 -2.1
414,992 - Echvi_0388 0.57 -1.1
414,992 - Echvi_0388 0.57 -1.8
414,992 - Echvi_0388 0.57 -2.2
414,992 - Echvi_0388 0.57 -1.8
415,006 + Echvi_0388 0.61 +0.7
415,048 + Echvi_0388 0.71 -1.4
415,048 + Echvi_0388 0.71 +0.5
415,049 - Echvi_0388 0.71 +2.3
415,049 - Echvi_0388 0.71 +0.1
415,049 - Echvi_0388 0.71 +0.9
415,147 - +2.9
415,166 - +0.8
415,186 + -3.1
415,190 + +1.1
415,190 + -3.2
415,190 + +0.1
415,191 - -1.2
415,191 - -3.1
415,259 + -1.0
415,260 - +0.0
415,269 - +1.1
415,280 + -1.2
415,280 + +0.5
415,316 - +0.0
415,335 + Echvi_0389 0.10 +0.3
415,356 + Echvi_0389 0.15 -0.0
415,356 + Echvi_0389 0.15 +2.0
415,357 - Echvi_0389 0.15 -0.4
415,385 - Echvi_0389 0.21 +4.7
415,385 - Echvi_0389 0.21 +1.5
415,411 + Echvi_0389 0.27 +0.2
415,411 + Echvi_0389 0.27 -1.7
415,411 + Echvi_0389 0.27 +1.0
415,411 + Echvi_0389 0.27 -2.7
415,412 - Echvi_0389 0.27 -1.5
415,412 - Echvi_0389 0.27 +2.3
415,412 - Echvi_0389 0.27 -1.0
415,430 - Echvi_0389 0.31 -0.5
415,447 + Echvi_0389 0.34 +1.2
415,468 + Echvi_0389 0.39 +1.8
415,468 + Echvi_0389 0.39 -2.5
415,469 - Echvi_0389 0.39 +0.5
415,469 - Echvi_0389 0.39 +1.0
415,469 - Echvi_0389 0.39 +2.5
415,481 + Echvi_0389 0.42 -0.4
415,481 + Echvi_0389 0.42 -1.5
415,481 + Echvi_0389 0.42 -1.4
415,482 - Echvi_0389 0.42 -0.4
415,482 - Echvi_0389 0.42 +2.2
415,555 - Echvi_0389 0.58 -0.1
415,560 - Echvi_0389 0.59 -0.0
415,652 - Echvi_0389 0.78 -2.2
415,665 - Echvi_0389 0.81 -2.8
415,670 + Echvi_0389 0.82 -2.0
415,670 + Echvi_0389 0.82 -0.1
415,670 + Echvi_0389 0.82 -0.4
415,670 + Echvi_0389 0.82 +2.7
415,670 + Echvi_0389 0.82 -1.9
415,670 + Echvi_0389 0.82 -1.9
415,670 + Echvi_0389 0.82 +0.2
415,670 + Echvi_0389 0.82 -2.1
415,670 + Echvi_0389 0.82 +0.8
415,670 + Echvi_0389 0.82 +2.8
415,670 + Echvi_0389 0.82 -2.5
415,670 + Echvi_0389 0.82 +1.6
415,671 - Echvi_0389 0.83 -0.7
415,671 - Echvi_0389 0.83 +0.0
415,671 - Echvi_0389 0.83 +3.9
415,671 - Echvi_0389 0.83 +0.2
415,671 - Echvi_0389 0.83 +1.0
415,671 - Echvi_0389 0.83 +2.0
415,671 - Echvi_0389 0.83 +1.3
415,671 - Echvi_0389 0.83 +3.0
415,671 - Echvi_0389 0.83 +0.2
415,671 - Echvi_0389 0.83 +2.4
415,671 - Echvi_0389 0.83 +1.5
415,671 - Echvi_0389 0.83 -0.1
415,674 + Echvi_0389 0.83 +0.5
415,674 + Echvi_0389 0.83 +2.5
415,674 + Echvi_0389 0.83 +1.7
415,675 - Echvi_0389 0.83 -1.5
415,691 + Echvi_0389 0.87 +1.0
415,692 - Echvi_0389 0.87 +0.8
415,750 - +0.1
415,754 + -0.3
415,755 - -1.3
415,804 + -0.8
415,804 + +1.0
415,805 - +1.2
415,815 + +0.5
415,815 + -0.5
415,815 + -1.5
415,817 + -0.4
415,817 + -2.3
415,818 - +1.5
415,818 - +0.9
415,825 + -2.2
415,826 - -1.2
415,826 - +3.3
415,826 - +0.7
415,837 + +1.9
415,896 - +2.2
415,905 - -3.4
415,905 - -0.9
415,913 - -2.9
415,948 + -2.1
415,948 + +0.9
415,949 - +1.0
415,991 + +0.4
416,035 + +2.6
416,045 - -1.7
416,065 + Echvi_0390 0.11 -1.9
416,065 + Echvi_0390 0.11 +1.9
416,071 - Echvi_0390 0.11 -2.6
416,109 - Echvi_0390 0.15 -3.3
416,165 + Echvi_0390 0.19 -0.8
416,431 - Echvi_0390 0.42 -3.6
416,431 - Echvi_0390 0.42 -3.6
416,437 - Echvi_0390 0.43 -1.1
416,552 + Echvi_0390 0.52 -2.0
416,556 - Echvi_0390 0.53 -0.6
416,564 + Echvi_0390 0.53 -0.9
416,565 - Echvi_0390 0.53 -1.5
416,657 + Echvi_0390 0.61 -1.5
416,658 - Echvi_0390 0.61 -1.0
416,658 - Echvi_0390 0.61 -1.9
416,713 + Echvi_0390 0.66 -0.9
416,715 + Echvi_0390 0.66 -2.0
416,716 - Echvi_0390 0.66 -2.1
416,726 - Echvi_0390 0.67 -1.2

Or see this region's nucleotide sequence