Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0384 and Echvi_0385 are separated by 41 nucleotides Echvi_0385 and Echvi_0386 are separated by 393 nucleotides Echvi_0386 and Echvi_0387 are separated by 16 nucleotides
Echvi_0384: Echvi_0384 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 410,266 to 412,722
_0384
Echvi_0385: Echvi_0385 - Predicted transcription factor, homolog of eukaryotic MBF1, at 412,764 to 413,048
_0385
Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768
_0386
Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171
_0387
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.793 kb on + strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.794 kb on - strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.799 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.833 kb on + strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.834 kb on - strand, within Echvi_0384 at 411.844 kb on + strand, within Echvi_0384 at 411.844 kb on + strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.845 kb on - strand, within Echvi_0384 at 411.894 kb on - strand, within Echvi_0384 at 411.901 kb on - strand, within Echvi_0384 at 411.910 kb on - strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.913 kb on + strand, within Echvi_0384 at 411.914 kb on - strand, within Echvi_0384 at 411.914 kb on - strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.924 kb on + strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.925 kb on - strand, within Echvi_0384 at 411.931 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 411.935 kb on - strand, within Echvi_0384 at 412.033 kb on + strand, within Echvi_0384 at 412.034 kb on - strand, within Echvi_0384 at 412.034 kb on - strand, within Echvi_0384 at 412.036 kb on + strand, within Echvi_0384 at 412.037 kb on - strand, within Echvi_0384 at 412.037 kb on - strand, within Echvi_0384 at 412.211 kb on + strand, within Echvi_0384 at 412.212 kb on - strand, within Echvi_0384 at 412.214 kb on + strand, within Echvi_0384 at 412.214 kb on + strand, within Echvi_0384 at 412.215 kb on - strand, within Echvi_0384 at 412.215 kb on - strand, within Echvi_0384 at 412.227 kb on + strand, within Echvi_0384 at 412.227 kb on + strand, within Echvi_0384 at 412.245 kb on - strand, within Echvi_0384 at 412.248 kb on - strand, within Echvi_0384 at 412.255 kb on + strand, within Echvi_0384 at 412.261 kb on + strand, within Echvi_0384 at 412.262 kb on - strand, within Echvi_0384 at 412.262 kb on - strand, within Echvi_0384 at 412.282 kb on - strand, within Echvi_0384 at 412.312 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.429 kb on + strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.430 kb on - strand, within Echvi_0384 at 412.432 kb on - strand, within Echvi_0384 at 412.488 kb on + strand at 412.489 kb on - strand at 412.532 kb on + strand at 412.532 kb on + strand at 412.532 kb on + strand at 412.533 kb on - strand at 412.535 kb on + strand at 412.536 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.538 kb on - strand at 412.542 kb on + strand at 412.542 kb on + strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.543 kb on - strand at 412.544 kb on + strand at 412.544 kb on + strand at 412.544 kb on + strand at 412.545 kb on - strand at 412.587 kb on + strand at 412.592 kb on + strand at 412.599 kb on + strand at 412.600 kb on - strand at 412.608 kb on + strand at 412.608 kb on + strand at 412.609 kb on - strand at 412.615 kb on + strand at 412.615 kb on + strand at 412.628 kb on - strand at 412.689 kb on + strand at 412.690 kb on - strand at 412.690 kb on - strand at 412.766 kb on - strand at 412.826 kb on + strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.834 kb on - strand, within Echvi_0385 at 412.836 kb on - strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.878 kb on + strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.879 kb on - strand, within Echvi_0385 at 412.976 kb on - strand, within Echvi_0385 at 412.983 kb on + strand, within Echvi_0385 at 412.991 kb on + strand, within Echvi_0385 at 412.992 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.007 kb on - strand, within Echvi_0385 at 413.016 kb on + strand, within Echvi_0385 at 413.041 kb on + strand at 413.042 kb on - strand at 413.048 kb on + strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.049 kb on - strand at 413.061 kb on + strand at 413.062 kb on - strand at 413.086 kb on + strand at 413.185 kb on - strand at 413.191 kb on + strand at 413.239 kb on + strand at 413.293 kb on + strand at 413.310 kb on + strand at 413.347 kb on - strand at 413.349 kb on + strand at 413.350 kb on - strand at 413.421 kb on - strand at 413.428 kb on + strand at 413.438 kb on - strand at 413.439 kb on + strand at 413.443 kb on + strand at 413.443 kb on + strand at 413.497 kb on + strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.544 kb on - strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.561 kb on + strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.568 kb on - strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.569 kb on + strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.570 kb on - strand, within Echvi_0386 at 413.576 kb on + strand, within Echvi_0386 at 413.577 kb on - strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.578 kb on + strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.579 kb on - strand, within Echvi_0386 at 413.582 kb on + strand, within Echvi_0386 at 413.583 kb on - strand, within Echvi_0386 at 413.613 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.645 kb on + strand, within Echvi_0386 at 413.708 kb on + strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.709 kb on - strand, within Echvi_0386 at 413.768 kb on + strand at 413.768 kb on + strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.769 kb on - strand at 413.780 kb on + strand at 413.781 kb on - strand at 413.781 kb on - strand at 413.793 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.820 kb on + strand at 413.821 kb on - strand at 413.857 kb on + strand, within Echvi_0387 at 413.949 kb on + strand, within Echvi_0387 at 413.972 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.026 kb on + strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.027 kb on - strand, within Echvi_0387 at 414.035 kb on + strand, within Echvi_0387
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 411,793 + Echvi_0384 0.62 -1.1 411,793 + Echvi_0384 0.62 +1.8 411,793 + Echvi_0384 0.62 -1.6 411,793 + Echvi_0384 0.62 +0.2 411,794 - Echvi_0384 0.62 -0.3 411,794 - Echvi_0384 0.62 -0.1 411,794 - Echvi_0384 0.62 +1.3 411,794 - Echvi_0384 0.62 -1.2 411,794 - Echvi_0384 0.62 +0.1 411,799 + Echvi_0384 0.62 +0.7 411,799 + Echvi_0384 0.62 +1.5 411,799 + Echvi_0384 0.62 +0.7 411,833 + Echvi_0384 0.64 -2.3 411,833 + Echvi_0384 0.64 -0.3 411,833 + Echvi_0384 0.64 -3.6 411,833 + Echvi_0384 0.64 +0.1 411,834 - Echvi_0384 0.64 +1.1 411,834 - Echvi_0384 0.64 +0.9 411,834 - Echvi_0384 0.64 -2.3 411,834 - Echvi_0384 0.64 +1.0 411,834 - Echvi_0384 0.64 -2.6 411,834 - Echvi_0384 0.64 -1.4 411,844 + Echvi_0384 0.64 -1.9 411,844 + Echvi_0384 0.64 +3.2 411,845 - Echvi_0384 0.64 -1.6 411,845 - Echvi_0384 0.64 +1.4 411,845 - Echvi_0384 0.64 +0.1 411,894 - Echvi_0384 0.66 -0.3 411,901 - Echvi_0384 0.67 -0.1 411,910 - Echvi_0384 0.67 +1.2 411,913 + Echvi_0384 0.67 +0.4 411,913 + Echvi_0384 0.67 +1.9 411,913 + Echvi_0384 0.67 +1.8 411,913 + Echvi_0384 0.67 -2.2 411,913 + Echvi_0384 0.67 +2.6 411,914 - Echvi_0384 0.67 -0.3 411,914 - Echvi_0384 0.67 -0.1 411,924 + Echvi_0384 0.67 +0.7 411,924 + Echvi_0384 0.67 -1.2 411,924 + Echvi_0384 0.67 +2.1 411,925 - Echvi_0384 0.68 +2.2 411,925 - Echvi_0384 0.68 +2.8 411,925 - Echvi_0384 0.68 -1.8 411,925 - Echvi_0384 0.68 -0.3 411,931 - Echvi_0384 0.68 -1.9 411,935 - Echvi_0384 0.68 -2.9 411,935 - Echvi_0384 0.68 +2.4 411,935 - Echvi_0384 0.68 -3.2 411,935 - Echvi_0384 0.68 +1.5 412,033 + Echvi_0384 0.72 +1.0 412,034 - Echvi_0384 0.72 +1.7 412,034 - Echvi_0384 0.72 +1.4 412,036 + Echvi_0384 0.72 +2.7 412,037 - Echvi_0384 0.72 +0.7 412,037 - Echvi_0384 0.72 -2.8 412,211 + Echvi_0384 0.79 -1.8 412,212 - Echvi_0384 0.79 +2.2 412,214 + Echvi_0384 0.79 +0.4 412,214 + Echvi_0384 0.79 +1.5 412,215 - Echvi_0384 0.79 -3.7 412,215 - Echvi_0384 0.79 -2.3 412,227 + Echvi_0384 0.80 -1.7 412,227 + Echvi_0384 0.80 -0.5 412,245 - Echvi_0384 0.81 -0.7 412,248 - Echvi_0384 0.81 -0.2 412,255 + Echvi_0384 0.81 -3.4 412,261 + Echvi_0384 0.81 -1.1 412,262 - Echvi_0384 0.81 -2.1 412,262 - Echvi_0384 0.81 -3.0 412,282 - Echvi_0384 0.82 -2.2 412,312 + Echvi_0384 0.83 +0.3 412,429 + Echvi_0384 0.88 +0.1 412,429 + Echvi_0384 0.88 +2.0 412,429 + Echvi_0384 0.88 -2.1 412,429 + Echvi_0384 0.88 -2.7 412,429 + Echvi_0384 0.88 -1.7 412,429 + Echvi_0384 0.88 -0.5 412,429 + Echvi_0384 0.88 +1.7 412,429 + Echvi_0384 0.88 +0.5 412,429 + Echvi_0384 0.88 -0.3 412,429 + Echvi_0384 0.88 -1.9 412,429 + Echvi_0384 0.88 +1.7 412,429 + Echvi_0384 0.88 -1.2 412,430 - Echvi_0384 0.88 -0.8 412,430 - Echvi_0384 0.88 +0.6 412,430 - Echvi_0384 0.88 -0.7 412,430 - Echvi_0384 0.88 -0.7 412,430 - Echvi_0384 0.88 -0.3 412,430 - Echvi_0384 0.88 -2.1 412,430 - Echvi_0384 0.88 +0.7 412,430 - Echvi_0384 0.88 -2.7 412,430 - Echvi_0384 0.88 -1.3 412,430 - Echvi_0384 0.88 -1.4 412,430 - Echvi_0384 0.88 +2.4 412,430 - Echvi_0384 0.88 +1.7 412,430 - Echvi_0384 0.88 +1.8 412,432 - Echvi_0384 0.88 +1.4 412,488 + -0.2 412,489 - -2.0 412,532 + +1.4 412,532 + -0.1 412,532 + -0.1 412,533 - +1.4 412,535 + +0.4 412,536 - -1.0 412,538 - +0.9 412,538 - -0.6 412,538 - +0.9 412,538 - -0.3 412,538 - -1.0 412,542 + -1.1 412,542 + +2.5 412,543 - -0.6 412,543 - +0.9 412,543 - +1.5 412,543 - -3.4 412,543 - -1.8 412,544 + -2.2 412,544 + -0.4 412,544 + +2.1 412,545 - -3.1 412,587 + -0.7 412,592 + +0.2 412,599 + -1.1 412,600 - +0.1 412,608 + -0.1 412,608 + -0.5 412,609 - +1.2 412,615 + +2.2 412,615 + +1.2 412,628 - +1.2 412,689 + -2.3 412,690 - +1.5 412,690 - -0.3 412,766 - +0.5 412,826 + Echvi_0385 0.22 -1.5 412,834 - Echvi_0385 0.25 -0.3 412,834 - Echvi_0385 0.25 -3.1 412,836 - Echvi_0385 0.25 -1.7 412,878 + Echvi_0385 0.40 -0.7 412,878 + Echvi_0385 0.40 +1.5 412,879 - Echvi_0385 0.40 -1.9 412,879 - Echvi_0385 0.40 -1.2 412,976 - Echvi_0385 0.74 -2.5 412,983 + Echvi_0385 0.77 +2.5 412,991 + Echvi_0385 0.80 +1.2 412,992 - Echvi_0385 0.80 -1.7 413,007 - Echvi_0385 0.85 +0.5 413,007 - Echvi_0385 0.85 -3.6 413,016 + Echvi_0385 0.88 +0.7 413,041 + -1.2 413,042 - -0.5 413,048 + -1.1 413,049 - +2.2 413,049 - -1.1 413,049 - +0.5 413,061 + +2.1 413,062 - -2.4 413,086 + +1.6 413,185 - +1.1 413,191 + +2.1 413,239 + +0.1 413,293 + -0.0 413,310 + +1.3 413,347 - -1.0 413,349 + +2.1 413,350 - -0.7 413,421 - +1.1 413,428 + -3.2 413,438 - +0.1 413,439 + -1.6 413,443 + -1.0 413,443 + -0.9 413,497 + Echvi_0386 0.17 +0.6 413,544 - Echvi_0386 0.31 +1.3 413,544 - Echvi_0386 0.31 +0.5 413,544 - Echvi_0386 0.31 +0.6 413,561 + Echvi_0386 0.36 +1.5 413,561 + Echvi_0386 0.36 +3.8 413,561 + Echvi_0386 0.36 +0.1 413,568 - Echvi_0386 0.39 +0.9 413,568 - Echvi_0386 0.39 -1.2 413,569 + Echvi_0386 0.39 +0.4 413,569 + Echvi_0386 0.39 +0.7 413,570 - Echvi_0386 0.39 +0.7 413,570 - Echvi_0386 0.39 +4.5 413,570 - Echvi_0386 0.39 -1.0 413,576 + Echvi_0386 0.41 -1.4 413,577 - Echvi_0386 0.41 +2.7 413,578 + Echvi_0386 0.42 +1.4 413,578 + Echvi_0386 0.42 -1.1 413,578 + Echvi_0386 0.42 +1.1 413,578 + Echvi_0386 0.42 +1.7 413,578 + Echvi_0386 0.42 -2.4 413,578 + Echvi_0386 0.42 -2.4 413,578 + Echvi_0386 0.42 -2.0 413,578 + Echvi_0386 0.42 +3.2 413,578 + Echvi_0386 0.42 +0.1 413,578 + Echvi_0386 0.42 +0.9 413,579 - Echvi_0386 0.42 -1.1 413,579 - Echvi_0386 0.42 -0.5 413,579 - Echvi_0386 0.42 -2.4 413,582 + Echvi_0386 0.43 -2.7 413,583 - Echvi_0386 0.43 -2.0 413,613 + Echvi_0386 0.52 +1.2 413,645 + Echvi_0386 0.62 +1.6 413,645 + Echvi_0386 0.62 -0.5 413,708 + Echvi_0386 0.81 -2.9 413,709 - Echvi_0386 0.82 +2.5 413,709 - Echvi_0386 0.82 -1.8 413,768 + +1.6 413,768 + +1.4 413,769 - -0.3 413,769 - -0.6 413,769 - -2.0 413,780 + -0.6 413,781 - +0.5 413,781 - +1.8 413,793 + -0.9 413,820 + -2.7 413,820 + -0.9 413,820 + -2.3 413,820 + -0.9 413,820 + -2.4 413,821 - -1.8 413,857 + Echvi_0387 0.19 -0.5 413,949 + Echvi_0387 0.42 -2.1 413,972 + Echvi_0387 0.48 +1.4 414,026 + Echvi_0387 0.62 -0.9 414,026 + Echvi_0387 0.62 -0.5 414,027 - Echvi_0387 0.63 -2.4 414,027 - Echvi_0387 0.63 -1.1 414,027 - Echvi_0387 0.63 -1.5 414,027 - Echvi_0387 0.63 +0.3 414,035 + Echvi_0387 0.65 +1.1
Or see this region's nucleotide sequence