Experiment: m.b. D-Cycloserine 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0363 and Echvi_0364 are separated by 253 nucleotides Echvi_0364 and Echvi_0365 are separated by 281 nucleotides
Echvi_0363: Echvi_0363 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 390,147 to 391,259
_0363
Echvi_0364: Echvi_0364 - hypothetical protein, at 391,513 to 392,265
_0364
Echvi_0365: Echvi_0365 - adenylosuccinate lyase, at 392,547 to 393,890
_0365
Position (kb) 391
392
393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 390.541 kb on - strand, within Echvi_0363 at 390.577 kb on + strand, within Echvi_0363 at 390.580 kb on + strand, within Echvi_0363 at 390.580 kb on + strand, within Echvi_0363 at 390.581 kb on - strand, within Echvi_0363 at 390.781 kb on + strand, within Echvi_0363 at 390.781 kb on + strand, within Echvi_0363 at 390.827 kb on + strand, within Echvi_0363 at 391.034 kb on - strand, within Echvi_0363 at 391.043 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.047 kb on + strand, within Echvi_0363 at 391.048 kb on - strand, within Echvi_0363 at 391.048 kb on - strand, within Echvi_0363 at 391.048 kb on - strand, within Echvi_0363 at 391.115 kb on + strand, within Echvi_0363 at 391.118 kb on - strand, within Echvi_0363 at 391.127 kb on - strand, within Echvi_0363 at 391.147 kb on + strand, within Echvi_0363 at 391.147 kb on + strand, within Echvi_0363 at 391.205 kb on - strand at 391.232 kb on + strand at 391.233 kb on - strand at 391.357 kb on - strand at 391.362 kb on - strand at 391.401 kb on - strand at 391.450 kb on + strand at 391.450 kb on + strand at 391.450 kb on + strand at 391.494 kb on - strand at 391.498 kb on + strand at 391.513 kb on - strand at 391.517 kb on + strand at 391.566 kb on - strand at 391.654 kb on + strand, within Echvi_0364 at 391.654 kb on + strand, within Echvi_0364 at 391.654 kb on + strand, within Echvi_0364 at 391.654 kb on + strand, within Echvi_0364 at 391.654 kb on + strand, within Echvi_0364 at 391.654 kb on + strand, within Echvi_0364 at 391.655 kb on - strand, within Echvi_0364 at 391.655 kb on - strand, within Echvi_0364 at 391.655 kb on - strand, within Echvi_0364 at 391.655 kb on - strand, within Echvi_0364 at 391.658 kb on + strand, within Echvi_0364 at 391.666 kb on + strand, within Echvi_0364 at 391.703 kb on - strand, within Echvi_0364 at 391.730 kb on - strand, within Echvi_0364 at 391.735 kb on - strand, within Echvi_0364 at 391.735 kb on - strand, within Echvi_0364 at 391.735 kb on - strand, within Echvi_0364 at 391.739 kb on - strand, within Echvi_0364 at 391.751 kb on - strand, within Echvi_0364 at 391.751 kb on - strand, within Echvi_0364 at 391.760 kb on - strand, within Echvi_0364 at 391.780 kb on + strand, within Echvi_0364 at 391.917 kb on - strand, within Echvi_0364 at 391.917 kb on - strand, within Echvi_0364 at 392.008 kb on + strand, within Echvi_0364 at 392.008 kb on + strand, within Echvi_0364 at 392.008 kb on + strand, within Echvi_0364 at 392.008 kb on + strand, within Echvi_0364 at 392.112 kb on + strand, within Echvi_0364 at 392.166 kb on - strand, within Echvi_0364 at 392.168 kb on - strand, within Echvi_0364 at 392.168 kb on - strand, within Echvi_0364 at 392.169 kb on + strand, within Echvi_0364 at 392.169 kb on + strand, within Echvi_0364 at 392.169 kb on + strand, within Echvi_0364 at 392.170 kb on - strand, within Echvi_0364 at 392.180 kb on + strand, within Echvi_0364 at 392.189 kb on - strand, within Echvi_0364 at 392.295 kb on + strand at 392.450 kb on - strand at 392.457 kb on - strand at 392.500 kb on + strand at 392.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.064 mg/ml remove 390,541 - Echvi_0363 0.35 +3.7 390,577 + Echvi_0363 0.39 +4.1 390,580 + Echvi_0363 0.39 +4.3 390,580 + Echvi_0363 0.39 +4.0 390,581 - Echvi_0363 0.39 +3.7 390,781 + Echvi_0363 0.57 +4.8 390,781 + Echvi_0363 0.57 +3.7 390,827 + Echvi_0363 0.61 +4.3 391,034 - Echvi_0363 0.80 +3.9 391,043 + Echvi_0363 0.81 +4.1 391,047 + Echvi_0363 0.81 +3.8 391,047 + Echvi_0363 0.81 +4.2 391,047 + Echvi_0363 0.81 +3.4 391,047 + Echvi_0363 0.81 +3.7 391,047 + Echvi_0363 0.81 +4.0 391,047 + Echvi_0363 0.81 +4.4 391,047 + Echvi_0363 0.81 +5.0 391,047 + Echvi_0363 0.81 +4.0 391,048 - Echvi_0363 0.81 +3.1 391,048 - Echvi_0363 0.81 +2.3 391,048 - Echvi_0363 0.81 +2.5 391,115 + Echvi_0363 0.87 +4.0 391,118 - Echvi_0363 0.87 +3.0 391,127 - Echvi_0363 0.88 +4.8 391,147 + Echvi_0363 0.90 +4.2 391,147 + Echvi_0363 0.90 +4.2 391,205 - +3.4 391,232 + +4.6 391,233 - +5.9 391,357 - -1.6 391,362 - -2.4 391,401 - -1.9 391,450 + -1.1 391,450 + -2.1 391,450 + -1.1 391,494 - -3.0 391,498 + -0.3 391,513 - -2.6 391,517 + -1.9 391,566 - +0.2 391,654 + Echvi_0364 0.19 -0.7 391,654 + Echvi_0364 0.19 +1.9 391,654 + Echvi_0364 0.19 -1.1 391,654 + Echvi_0364 0.19 -2.9 391,654 + Echvi_0364 0.19 -2.9 391,654 + Echvi_0364 0.19 +0.4 391,655 - Echvi_0364 0.19 -3.7 391,655 - Echvi_0364 0.19 +0.7 391,655 - Echvi_0364 0.19 -3.7 391,655 - Echvi_0364 0.19 +0.8 391,658 + Echvi_0364 0.19 -0.4 391,666 + Echvi_0364 0.20 -0.3 391,703 - Echvi_0364 0.25 -1.1 391,730 - Echvi_0364 0.29 -0.9 391,735 - Echvi_0364 0.29 -0.1 391,735 - Echvi_0364 0.29 -0.5 391,735 - Echvi_0364 0.29 -4.1 391,739 - Echvi_0364 0.30 -0.9 391,751 - Echvi_0364 0.32 -1.8 391,751 - Echvi_0364 0.32 +0.5 391,760 - Echvi_0364 0.33 -2.9 391,780 + Echvi_0364 0.35 +0.3 391,917 - Echvi_0364 0.54 -0.8 391,917 - Echvi_0364 0.54 +1.1 392,008 + Echvi_0364 0.66 -1.1 392,008 + Echvi_0364 0.66 +0.6 392,008 + Echvi_0364 0.66 +2.3 392,008 + Echvi_0364 0.66 +1.0 392,112 + Echvi_0364 0.80 +2.5 392,166 - Echvi_0364 0.87 -1.9 392,168 - Echvi_0364 0.87 -3.6 392,168 - Echvi_0364 0.87 -0.8 392,169 + Echvi_0364 0.87 -0.7 392,169 + Echvi_0364 0.87 -1.8 392,169 + Echvi_0364 0.87 -0.3 392,170 - Echvi_0364 0.87 +0.9 392,180 + Echvi_0364 0.89 -1.4 392,189 - Echvi_0364 0.90 -1.6 392,295 + +3.5 392,450 - +1.7 392,457 - -0.3 392,500 + +0.2 392,524 + -2.8
Or see this region's nucleotide sequence